Wall clock time and date at job start Mon Mar 30 2020 01:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33263 * 125.56946 * 2 1 4 4 N 1.28732 * 110.00347 * 179.97438 * 3 2 1 5 5 N 1.40296 * 108.18924 * 359.77959 * 4 3 2 6 6 H 0.97002 * 126.84912 * 180.26983 * 5 4 3 7 7 C 1.35860 * 125.56877 * 179.97438 * 2 1 3 8 8 N 1.39383 * 126.68374 * 359.97438 * 7 2 1 9 9 C 1.34775 * 120.00403 * 180.02562 * 8 7 2 10 10 O 1.21609 * 120.00026 * 359.97438 * 9 8 7 11 11 C 1.47570 * 120.00029 * 180.02562 * 9 8 7 12 12 C 1.40046 * 119.89989 * 180.02562 * 11 9 8 13 13 C 1.36295 * 120.10814 * 180.29806 * 12 11 9 14 14 C 1.40903 * 119.89204 * 359.44856 * 13 12 11 15 15 C 1.41086 * 120.10191 * 180.25367 * 14 13 12 16 16 H 1.08000 * 119.99914 * 204.82865 * 15 14 13 17 17 C 1.40222 * 119.99703 * 24.82381 * 15 14 13 18 18 N 1.30651 * 120.00403 * 17.72576 * 17 15 14 19 19 Si 1.86807 * 119.99786 * 197.71826 * 17 15 14 20 20 H 1.48500 * 109.46949 * 60.00624 * 19 17 15 21 21 H 1.48503 * 109.46973 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46954 * 300.00261 * 19 17 15 23 23 C 1.40901 * 119.79600 * 0.54758 * 14 13 12 24 24 C 1.36298 * 119.89779 * 359.73248 * 23 14 13 25 25 H 1.09000 * 109.46742 * 270.03929 * 1 2 3 26 26 H 1.09003 * 109.47189 * 30.03642 * 1 2 3 27 27 H 1.08997 * 109.47328 * 150.03966 * 1 2 3 28 28 H 0.97003 * 119.99460 * 0.02562 * 8 7 2 29 29 H 1.07998 * 119.94484 * 0.02562 * 12 11 9 30 30 H 1.08004 * 120.05349 * 179.70081 * 13 12 11 31 31 H 0.96993 * 120.00319 * 179.97438 * 18 17 15 32 32 H 1.08007 * 120.05516 * 179.71094 * 23 14 13 33 33 H 1.07997 * 119.94986 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2822 1.0840 0.0000 4 7 3.5223 0.7385 0.0005 5 7 3.5865 -0.6629 0.0061 6 1 4.3885 -1.2085 0.0113 7 6 2.2973 -1.1051 0.0005 8 7 1.8724 -2.4326 0.0016 9 6 2.7785 -3.4303 0.0025 10 8 3.9669 -3.1723 0.0019 11 6 2.3286 -4.8357 0.0031 12 6 3.2720 -5.8707 0.0045 13 6 2.8612 -7.1703 -0.0010 14 6 1.4848 -7.4717 0.0034 15 6 1.0547 -8.8154 0.0031 16 1 0.0802 -9.0703 -0.3865 17 6 1.8924 -9.8198 0.5085 18 7 2.8973 -9.5046 1.2818 19 14 1.5717 -11.6086 0.0764 20 1 1.6498 -11.7838 -1.3961 21 1 2.5910 -12.4667 0.7322 22 1 0.2191 -11.9974 0.5503 23 6 0.5393 -6.4270 0.0020 24 6 0.9595 -5.1304 0.0018 25 1 -0.3633 0.0007 1.0277 26 1 -0.3634 0.8897 -0.5144 27 1 -0.3634 -0.8903 -0.5132 28 1 0.9244 -2.6384 0.0017 29 1 4.3268 -5.6387 0.0057 30 1 3.5896 -7.9678 -0.0048 31 1 3.4766 -10.1994 1.6317 32 1 -0.5168 -6.6533 0.0007 33 1 0.2355 -4.3290 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001533859052.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:59 Heat of formation + Delta-G solvation = 64.799935 kcal Electronic energy + Delta-G solvation = -19488.860888 eV Core-core repulsion = 16322.853758 eV Total energy + Delta-G solvation = -3166.007130 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.03174 -39.55341 -37.46998 -35.06368 -34.17200 -33.04616 -31.35447 -30.24846 -29.68072 -26.93357 -26.05385 -23.67261 -22.29278 -21.35734 -20.64274 -20.15804 -18.01142 -17.59667 -17.23819 -16.19078 -15.88271 -15.55385 -14.67577 -14.39229 -14.25493 -13.63707 -13.50774 -13.00179 -12.90862 -12.54834 -12.48021 -12.15234 -11.75721 -11.70822 -11.40782 -11.35979 -11.16615 -11.00991 -10.85328 -10.35219 -9.96954 -9.79280 -9.64645 -9.55693 -8.19175 -7.96664 -7.82288 -7.26202 -4.85558 1.35946 1.95551 2.40918 2.57560 2.76904 2.80947 2.83701 2.86281 3.39808 3.49671 3.58033 4.29068 4.63848 4.78448 5.10334 5.30883 5.45796 5.59364 5.67473 5.72893 5.79639 6.02367 6.03084 6.32441 6.56249 6.61201 6.77215 6.82001 7.16678 7.25888 7.30119 7.34462 7.60498 7.70978 7.81433 8.17492 8.34360 8.35405 8.37095 8.49499 9.64651 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.048104 B = 0.003612 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.927835 B = 7750.469701 C = 8248.336543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.099 4.099 3 N -0.220 5.220 4 N -0.087 5.087 5 N -0.463 5.463 6 H 0.454 0.546 7 C 0.317 3.683 8 N -0.646 5.646 9 C 0.572 3.428 10 O -0.564 6.564 11 C -0.295 4.295 12 C -0.028 4.028 13 C -0.183 4.183 14 C 0.129 3.871 15 C -0.429 4.429 16 H 0.089 0.911 17 C 0.072 3.928 18 N -0.759 5.759 19 Si 0.918 3.082 20 H -0.258 1.258 21 H -0.274 1.274 22 H -0.260 1.260 23 C -0.231 4.231 24 C -0.044 4.044 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.426 0.574 29 H 0.102 0.898 30 H 0.123 0.877 31 H 0.292 0.708 32 H 0.102 0.898 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.717 4.493 -1.472 6.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.242 4.242 3 N -0.089 5.089 4 N -0.068 5.068 5 N -0.190 5.190 6 H 0.308 0.692 7 C 0.084 3.916 8 N -0.297 5.297 9 C 0.372 3.628 10 O -0.445 6.445 11 C -0.300 4.300 12 C -0.048 4.048 13 C -0.202 4.202 14 C 0.126 3.874 15 C -0.455 4.455 16 H 0.107 0.893 17 C -0.152 4.152 18 N -0.380 5.380 19 Si 0.741 3.259 20 H -0.183 1.183 21 H -0.198 1.198 22 H -0.185 1.185 23 C -0.250 4.250 24 C -0.063 4.063 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.267 0.733 29 H 0.120 0.880 30 H 0.141 0.859 31 H 0.103 0.897 32 H 0.120 0.880 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.919 5.830 -1.311 6.650 hybrid contribution -0.522 -2.250 -0.010 2.310 sum -3.441 3.580 -1.321 5.138 Atomic orbital electron populations 1.20003 0.86399 1.03074 1.02592 1.21016 0.97766 0.86389 1.19069 1.74037 0.97863 1.26136 1.10903 1.81898 1.11988 0.86481 1.26445 1.48674 1.07254 1.08207 1.54882 0.69219 1.18722 0.86319 0.86863 0.99657 1.43282 1.12241 1.00596 1.73562 1.19007 0.84406 0.85897 0.73500 1.90478 1.17087 1.84130 1.52779 1.18514 0.94148 0.88740 1.28567 1.20439 0.97311 0.92249 0.94796 1.21016 0.96271 0.94801 1.08097 1.17835 0.91756 0.92756 0.85082 1.19956 1.02215 0.91305 1.32023 0.89304 1.26194 0.93629 1.02934 0.92444 1.69720 1.11909 1.37371 1.19042 0.86183 0.79673 0.79679 0.80413 1.18250 1.19823 1.18453 1.20685 0.98233 0.92200 1.13870 1.20349 0.93073 0.96090 0.96787 0.91128 0.90464 0.91427 0.73306 0.87969 0.85950 0.89671 0.88009 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.62 10.23 36.00 0.37 -0.25 16 2 C -0.10 -1.44 7.13 -82.82 -0.59 -2.03 16 3 N -0.22 -3.63 12.32 33.30 0.41 -3.22 16 4 N -0.09 -1.50 13.90 60.35 0.84 -0.66 16 5 N -0.46 -7.73 7.11 31.27 0.22 -7.51 16 6 H 0.45 7.55 6.61 -182.45 -1.21 6.34 16 7 C 0.32 4.98 7.74 -152.40 -1.18 3.80 16 8 N -0.65 -9.72 5.36 -12.23 -0.07 -9.79 16 9 C 0.57 10.70 7.73 -12.45 -0.10 10.61 16 10 O -0.56 -11.58 13.94 5.27 0.07 -11.51 16 11 C -0.29 -5.96 5.89 -104.73 -0.62 -6.58 16 12 C -0.03 -0.63 9.52 -39.60 -0.38 -1.00 16 13 C -0.18 -4.25 8.63 -39.27 -0.34 -4.59 16 14 C 0.13 2.99 5.57 -106.80 -0.60 2.39 16 15 C -0.43 -9.69 9.04 -37.76 -0.34 -10.04 16 16 H 0.09 1.88 7.91 -52.49 -0.42 1.46 16 17 C 0.07 1.54 5.14 -17.31 -0.09 1.45 16 18 N -0.76 -17.06 10.96 55.56 0.61 -16.45 16 19 Si 0.92 15.92 29.60 -169.99 -5.03 10.89 16 20 H -0.26 -4.48 7.11 56.52 0.40 -4.08 16 21 H -0.27 -4.66 7.11 56.52 0.40 -4.26 16 22 H -0.26 -4.46 7.11 56.52 0.40 -4.06 16 23 C -0.23 -4.74 9.73 -39.27 -0.38 -5.12 16 24 C -0.04 -0.81 9.47 -39.60 -0.38 -1.19 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.55 7.58 -51.93 -0.39 0.16 16 28 H 0.43 5.14 6.05 -40.82 -0.25 4.90 16 29 H 0.10 2.21 7.63 -52.49 -0.40 1.81 16 30 H 0.12 2.93 6.16 -52.48 -0.32 2.60 16 31 H 0.29 5.91 8.29 -40.82 -0.34 5.58 16 32 H 0.10 1.90 8.06 -52.48 -0.42 1.48 16 33 H 0.09 1.30 6.37 -52.49 -0.33 0.97 16 LS Contribution 291.28 15.07 4.39 4.39 Total: -1.00 -26.14 291.28 -6.89 -33.03 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -3.72 Total: 13.38 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -4.61 Total: -12.54 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 2.01 Total: -37.63 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.07 Total: -11.51 kcal Atomic # 14 Polarization: 15.92 SS G_CDS: -5.03 Total: 10.89 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -26.14 -6.89 -33.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533859052.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.828 kcal (2) G-P(sol) polarization free energy of solvation -26.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds