Wall clock time and date at job start Mon Mar 30 2020 01:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33263 * 125.56946 * 2 1 4 4 N 1.28732 * 110.00347 * 179.97438 * 3 2 1 5 5 N 1.40296 * 108.18924 * 359.77959 * 4 3 2 6 6 H 0.97002 * 126.84912 * 180.26983 * 5 4 3 7 7 C 1.35860 * 125.56877 * 179.97438 * 2 1 3 8 8 N 1.39383 * 126.68374 * 359.97438 * 7 2 1 9 9 C 1.34775 * 120.00403 * 180.02562 * 8 7 2 10 10 O 1.21609 * 120.00026 * 359.97438 * 9 8 7 11 11 C 1.47570 * 120.00029 * 180.02562 * 9 8 7 12 12 C 1.40046 * 119.89989 * 180.02562 * 11 9 8 13 13 C 1.36295 * 120.10814 * 180.29806 * 12 11 9 14 14 C 1.40903 * 119.89204 * 359.44856 * 13 12 11 15 15 C 1.41086 * 120.10191 * 180.25367 * 14 13 12 16 16 H 1.08000 * 119.99914 * 204.82865 * 15 14 13 17 17 C 1.40222 * 119.99703 * 24.82381 * 15 14 13 18 18 N 1.30651 * 120.00403 * 17.72576 * 17 15 14 19 19 Si 1.86807 * 119.99786 * 197.71826 * 17 15 14 20 20 H 1.48500 * 109.46949 * 60.00624 * 19 17 15 21 21 H 1.48503 * 109.46973 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46954 * 300.00261 * 19 17 15 23 23 C 1.40901 * 119.79600 * 0.54758 * 14 13 12 24 24 C 1.36298 * 119.89779 * 359.73248 * 23 14 13 25 25 H 1.09000 * 109.46742 * 270.03929 * 1 2 3 26 26 H 1.09003 * 109.47189 * 30.03642 * 1 2 3 27 27 H 1.08997 * 109.47328 * 150.03966 * 1 2 3 28 28 H 0.97003 * 119.99460 * 0.02562 * 8 7 2 29 29 H 1.07998 * 119.94484 * 0.02562 * 12 11 9 30 30 H 1.08004 * 120.05349 * 179.70081 * 13 12 11 31 31 H 0.96993 * 120.00319 * 179.97438 * 18 17 15 32 32 H 1.08007 * 120.05516 * 179.71094 * 23 14 13 33 33 H 1.07997 * 119.94986 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2822 1.0840 0.0000 4 7 3.5223 0.7385 0.0005 5 7 3.5865 -0.6629 0.0061 6 1 4.3885 -1.2085 0.0113 7 6 2.2973 -1.1051 0.0005 8 7 1.8724 -2.4326 0.0016 9 6 2.7785 -3.4303 0.0025 10 8 3.9669 -3.1723 0.0019 11 6 2.3286 -4.8357 0.0031 12 6 3.2720 -5.8707 0.0045 13 6 2.8612 -7.1703 -0.0010 14 6 1.4848 -7.4717 0.0034 15 6 1.0547 -8.8154 0.0031 16 1 0.0802 -9.0703 -0.3865 17 6 1.8924 -9.8198 0.5085 18 7 2.8973 -9.5046 1.2818 19 14 1.5717 -11.6086 0.0764 20 1 1.6498 -11.7838 -1.3961 21 1 2.5910 -12.4667 0.7322 22 1 0.2191 -11.9974 0.5503 23 6 0.5393 -6.4270 0.0020 24 6 0.9595 -5.1304 0.0018 25 1 -0.3633 0.0007 1.0277 26 1 -0.3634 0.8897 -0.5144 27 1 -0.3634 -0.8903 -0.5132 28 1 0.9244 -2.6384 0.0017 29 1 4.3268 -5.6387 0.0057 30 1 3.5896 -7.9678 -0.0048 31 1 3.4766 -10.1994 1.6317 32 1 -0.5168 -6.6533 0.0007 33 1 0.2355 -4.3290 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001533859052.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:58 Heat of formation + Delta-G solvation = 49.306395 kcal Electronic energy + Delta-G solvation = -19489.532738 eV Core-core repulsion = 16322.853758 eV Total energy + Delta-G solvation = -3166.678980 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.28656 -41.03395 -39.06942 -36.45129 -35.77201 -34.22542 -32.67356 -31.81920 -31.22626 -28.22252 -27.40961 -25.06329 -23.77130 -22.89604 -21.94615 -21.65692 -19.50202 -19.02374 -18.68193 -17.52288 -17.14765 -17.10625 -16.17597 -15.82010 -15.79251 -15.14950 -14.73363 -14.50976 -14.04752 -13.74994 -13.70340 -13.38499 -13.33699 -12.93948 -12.86172 -12.76882 -12.59416 -12.41198 -12.17400 -11.86439 -11.40688 -11.22336 -11.20068 -11.14142 -9.64045 -9.58478 -9.28675 -8.85275 -6.54251 -0.02873 0.48537 1.14386 1.15839 1.30503 1.39515 1.47961 1.52334 1.99846 2.06392 2.13679 2.69513 3.51552 3.63894 3.69973 3.90139 4.07685 4.32265 4.36721 4.57965 4.87544 4.90647 4.93925 4.98074 5.03112 5.14019 5.19564 5.39297 5.53583 5.71368 5.81607 5.96513 5.98342 6.14802 6.24449 6.51005 6.70908 6.83029 6.90203 7.10564 8.08455 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.048104 B = 0.003612 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.927835 B = 7750.469701 C = 8248.336543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.081 4.081 3 N -0.236 5.236 4 N -0.107 5.107 5 N -0.468 5.468 6 H 0.452 0.548 7 C 0.301 3.699 8 N -0.624 5.624 9 C 0.577 3.423 10 O -0.586 6.586 11 C -0.299 4.299 12 C -0.042 4.042 13 C -0.205 4.205 14 C 0.103 3.897 15 C -0.460 4.460 16 H 0.097 0.903 17 C 0.035 3.965 18 N -0.795 5.795 19 Si 0.987 3.013 20 H -0.258 1.258 21 H -0.270 1.270 22 H -0.252 1.252 23 C -0.242 4.242 24 C -0.031 4.031 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.442 0.558 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.297 0.703 32 H 0.122 0.878 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.108 5.091 -1.704 8.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.226 4.226 3 N -0.105 5.105 4 N -0.088 5.088 5 N -0.195 5.195 6 H 0.305 0.695 7 C 0.068 3.932 8 N -0.276 5.276 9 C 0.375 3.625 10 O -0.468 6.468 11 C -0.304 4.304 12 C -0.061 4.061 13 C -0.224 4.224 14 C 0.099 3.901 15 C -0.486 4.486 16 H 0.115 0.885 17 C -0.185 4.185 18 N -0.418 5.418 19 Si 0.807 3.193 20 H -0.182 1.182 21 H -0.194 1.194 22 H -0.176 1.176 23 C -0.261 4.261 24 C -0.050 4.050 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.111 0.889 28 H 0.287 0.713 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.109 0.891 32 H 0.140 0.860 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.343 6.476 -1.542 8.536 hybrid contribution 0.229 -2.245 0.065 2.258 sum -5.114 4.231 -1.476 6.800 Atomic orbital electron populations 1.20273 0.82984 1.04897 1.04291 1.21751 0.99631 0.85072 1.16100 1.74059 0.97944 1.26968 1.11528 1.81906 1.12615 0.86649 1.27581 1.48744 1.07788 1.08242 1.54701 0.69517 1.18931 0.86227 0.87163 1.00840 1.42876 1.12441 0.99718 1.72574 1.18759 0.84431 0.86008 0.73305 1.90483 1.18280 1.84502 1.53522 1.18719 0.94779 0.89136 1.27767 1.20522 0.97633 0.92679 0.95293 1.20941 0.96580 0.94825 1.10051 1.18199 0.92064 0.94106 0.85687 1.20267 1.03175 0.91891 1.33295 0.88463 1.27027 0.93023 1.06819 0.91678 1.69776 1.12987 1.38857 1.20165 0.85146 0.79762 0.74502 0.79896 1.18192 1.19413 1.17599 1.20971 0.98832 0.92468 1.13858 1.20754 0.93122 0.96865 0.94254 0.89374 0.89428 0.88918 0.71340 0.88699 0.87825 0.89142 0.86020 0.83922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 10.23 71.24 0.73 -0.30 16 2 C -0.08 -2.12 7.13 41.79 0.30 -1.82 16 3 N -0.24 -7.38 12.32 -48.57 -0.60 -7.98 16 4 N -0.11 -3.59 13.90 37.02 0.51 -3.07 16 5 N -0.47 -15.16 7.11 -54.97 -0.39 -15.55 16 6 H 0.45 14.92 6.61 -213.19 -1.41 13.51 16 7 C 0.30 8.73 7.74 130.97 1.01 9.74 16 8 N -0.62 -16.85 5.36 -310.86 -1.67 -18.51 16 9 C 0.58 20.61 7.73 86.71 0.67 21.28 16 10 O -0.59 -23.79 13.94 -4.06 -0.06 -23.85 16 11 C -0.30 -11.72 5.89 -19.94 -0.12 -11.84 16 12 C -0.04 -1.89 9.52 22.26 0.21 -1.67 16 13 C -0.20 -9.87 8.63 22.47 0.19 -9.68 16 14 C 0.10 4.81 5.57 -21.28 -0.12 4.69 16 15 C -0.46 -21.04 9.04 23.45 0.21 -20.83 16 16 H 0.10 4.10 7.91 -2.91 -0.02 4.08 16 17 C 0.03 1.51 5.14 85.35 0.44 1.94 16 18 N -0.80 -36.91 10.96 21.87 0.24 -36.67 16 19 Si 0.99 32.53 29.60 68.60 2.03 34.56 16 20 H -0.26 -8.38 7.11 99.48 0.71 -7.68 16 21 H -0.27 -8.60 7.11 99.48 0.71 -7.89 16 22 H -0.25 -7.92 7.11 99.48 0.71 -7.21 16 23 C -0.24 -9.57 9.73 22.47 0.22 -9.36 16 24 C -0.03 -1.07 9.47 22.26 0.21 -0.86 16 25 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.09 1.01 7.58 -2.39 -0.02 0.99 16 28 H 0.44 8.62 6.05 -92.71 -0.56 8.05 16 29 H 0.09 4.29 7.63 -2.91 -0.02 4.27 16 30 H 0.10 5.27 6.16 -2.91 -0.02 5.25 16 31 H 0.30 12.43 8.29 -92.71 -0.77 11.67 16 32 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 33 H 0.14 3.31 6.37 -2.91 -0.02 3.29 16 Total: -1.00 -58.13 291.28 3.25 -54.88 By element: Atomic # 1 Polarization: 35.68 SS G_CDS: -0.78 Total: 34.90 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 3.96 Total: -18.70 kcal Atomic # 7 Polarization: -79.89 SS G_CDS: -1.90 Total: -81.79 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.06 Total: -23.85 kcal Atomic # 14 Polarization: 32.53 SS G_CDS: 2.03 Total: 34.56 kcal Total: -58.13 3.25 -54.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533859052.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.188 kcal (2) G-P(sol) polarization free energy of solvation -58.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds