Wall clock time and date at job start Mon Mar 30 2020 00:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31323 * 1 3 3 Si 1.86807 * 119.99704 * 2 1 4 4 H 1.48494 * 109.47159 * 275.38464 * 3 2 1 5 5 H 1.48503 * 109.46957 * 35.38657 * 3 2 1 6 6 H 1.48499 * 109.46947 * 155.38711 * 3 2 1 7 7 C 1.39103 * 120.00585 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99989 * 349.64175 * 7 2 1 9 9 N 1.36767 * 120.00617 * 169.64106 * 7 2 1 10 10 C 1.34778 * 120.00259 * 312.19969 * 9 7 2 11 11 O 1.21618 * 119.99484 * 2.88886 * 10 9 7 12 12 C 1.47590 * 120.00319 * 182.89424 * 10 9 7 13 13 C 1.39748 * 121.08295 * 318.75453 * 12 10 9 14 14 C 1.38277 * 119.36536 * 179.97438 * 13 12 10 15 15 N 1.31760 * 121.55970 * 0.02562 * 14 13 12 16 16 C 1.32137 * 121.96348 * 359.97438 * 15 14 13 17 17 N 1.37943 * 133.79793 * 180.02562 * 16 15 14 18 18 H 0.96996 * 126.35392 * 359.95879 * 17 16 15 19 19 C 1.35994 * 107.28323 * 179.97438 * 17 16 15 20 20 N 1.30293 * 110.04474 * 0.02562 * 19 17 16 21 21 C 1.34638 * 109.66419 * 359.97438 * 20 19 17 22 22 C 1.46502 * 120.00193 * 132.19299 * 9 7 2 23 23 C 1.53000 * 117.49790 * 3.81257 * 22 9 7 24 24 C 1.52999 * 60.00210 * 252.51044 * 23 22 9 25 25 H 0.96998 * 120.00113 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.31318 * 359.95948 * 13 12 10 27 27 H 1.08002 * 119.22033 * 180.02562 * 14 13 12 28 28 H 1.08003 * 124.97803 * 180.02562 * 19 17 16 29 29 H 1.08998 * 115.55190 * 149.52717 * 22 9 7 30 30 H 1.08994 * 117.49894 * 0.02562 * 23 22 9 31 31 H 1.09003 * 117.49439 * 145.02313 * 23 22 9 32 32 H 1.09000 * 117.49703 * 252.51173 * 24 23 22 33 33 H 1.09003 * 117.49813 * 107.49100 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6178 0.0000 4 1 2.3809 2.1122 -1.3938 5 1 1.5061 2.6172 0.8108 6 1 3.5970 1.4101 0.5831 7 6 2.0089 -1.2046 -0.0005 8 1 1.4821 -2.1325 0.1672 9 7 3.3598 -1.2142 -0.2135 10 6 3.8854 -0.5154 -1.2392 11 8 3.1647 0.1656 -1.9434 12 6 5.3353 -0.5767 -1.5078 13 6 6.2642 -0.5505 -0.4641 14 6 7.6144 -0.6104 -0.7563 15 7 8.0484 -0.6913 -1.9977 16 6 7.2209 -0.7201 -3.0275 17 7 7.3986 -0.7999 -4.3931 18 1 8.2469 -0.8523 -4.8605 19 6 6.1636 -0.7910 -4.9625 20 7 5.2471 -0.7109 -4.0399 21 6 5.8286 -0.6640 -2.8265 22 6 4.2358 -1.9838 0.6734 23 6 3.5722 -2.8268 1.7642 24 6 4.3208 -1.5456 2.1368 25 1 -0.4850 0.8400 -0.0004 26 1 5.9306 -0.4838 0.5610 27 1 8.3302 -0.5903 0.0522 28 1 5.9708 -0.8427 -6.0239 29 1 5.1415 -2.3786 0.2129 30 1 2.4839 -2.8091 1.8217 31 1 4.0412 -3.7766 2.0214 32 1 5.2822 -1.6524 2.6392 33 1 3.7249 -0.6846 2.4398 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001542356595.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:49 Heat of formation + Delta-G solvation = 109.684265 kcal Electronic energy + Delta-G solvation = -20975.250043 eV Core-core repulsion = 17811.189244 eV Total energy + Delta-G solvation = -3164.060799 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.20819 -39.40120 -37.82024 -36.43781 -33.52561 -32.91053 -31.73665 -30.87794 -29.54338 -25.73780 -23.98380 -23.04444 -22.16395 -21.60478 -21.27075 -19.79135 -18.31218 -17.50391 -17.03815 -16.31408 -15.65975 -15.27730 -15.23932 -14.85354 -14.10026 -13.85849 -13.57429 -13.29577 -13.11002 -12.64188 -12.46098 -12.34898 -11.60243 -11.15411 -10.91917 -10.81098 -10.65102 -10.30014 -10.09435 -10.06149 -9.66636 -9.23932 -8.80408 -8.54726 -8.46015 -8.33362 -7.50369 -6.23929 -4.07583 0.74519 1.35546 2.61428 2.94121 3.27731 3.45332 3.65147 3.74338 4.00845 4.23438 4.27922 4.44280 4.57243 4.67692 4.85203 5.03331 5.14071 5.25521 5.35037 5.44359 5.52390 5.69540 5.75714 5.90873 6.08919 6.14146 6.25242 6.35152 6.65338 6.73292 6.85696 7.16990 7.76498 7.90454 7.95609 7.98584 8.67165 8.82617 9.31782 9.71932 10.78682 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020452 B = 0.008101 C = 0.006761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.711423 B = 3455.320985 C = 4140.421648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.088 3.912 3 Si 0.923 3.077 4 H -0.257 1.257 5 H -0.311 1.311 6 H -0.281 1.281 7 C -0.335 4.335 8 H 0.100 0.900 9 N -0.423 5.423 10 C 0.490 3.510 11 O -0.516 6.516 12 C 0.000 4.000 13 C -0.174 4.174 14 C 0.134 3.866 15 N -0.488 5.488 16 C 0.232 3.768 17 N -0.593 5.593 18 H 0.425 0.575 19 C 0.261 3.739 20 N -0.461 5.461 21 C 0.041 3.959 22 C 0.056 3.944 23 C -0.170 4.170 24 C -0.199 4.199 25 H 0.275 0.725 26 H 0.154 0.846 27 H 0.168 0.832 28 H 0.224 0.776 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.361 -3.151 -2.346 16.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.122 4.122 3 Si 0.755 3.245 4 H -0.183 1.183 5 H -0.242 1.242 6 H -0.207 1.207 7 C -0.461 4.461 8 H 0.117 0.883 9 N -0.142 5.142 10 C 0.280 3.720 11 O -0.398 6.398 12 C -0.014 4.014 13 C -0.198 4.198 14 C -0.031 4.031 15 N -0.202 5.202 16 C -0.005 4.005 17 N -0.208 5.208 18 H 0.265 0.735 19 C -0.026 4.026 20 N -0.178 5.178 21 C -0.082 4.082 22 C -0.050 4.050 23 C -0.208 4.208 24 C -0.238 4.238 25 H 0.085 0.915 26 H 0.171 0.829 27 H 0.185 0.815 28 H 0.240 0.760 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 15.700 -2.750 -3.038 16.226 hybrid contribution 0.812 0.760 0.015 1.112 sum 16.512 -1.990 -3.024 16.904 Atomic orbital electron populations 1.69642 1.06779 1.28484 1.44770 1.25463 0.95098 0.99752 0.91910 0.86067 0.78596 0.81562 0.78283 1.18312 1.24156 1.20676 1.18812 0.79428 0.95302 1.52597 0.88264 1.42992 1.06539 1.42800 1.21913 1.17978 0.85927 0.86068 0.82013 1.90621 1.59730 1.41205 1.48228 1.20069 0.95983 0.95275 0.90032 1.22461 0.93460 1.03373 1.00484 1.22416 0.93947 0.95269 0.91456 1.66192 1.39075 1.16727 0.98232 1.18941 0.91577 1.04173 0.85768 1.42827 1.10583 1.63341 1.04071 0.73530 1.25608 0.77894 0.98764 1.00336 1.70271 1.31231 1.18567 0.97760 1.19227 0.90349 1.05821 0.92821 1.22021 0.96287 1.00297 0.86357 1.23162 1.01833 0.93795 1.01984 1.23337 1.01773 0.99871 0.98798 0.91527 0.82885 0.81531 0.76028 0.86818 0.86949 0.89358 0.89160 0.88352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.25 13.95 55.50 0.77 -25.47 16 2 C 0.09 2.59 5.08 -17.45 -0.09 2.50 16 3 Si 0.92 25.23 24.43 -169.99 -4.15 21.08 16 4 H -0.26 -7.56 6.42 56.52 0.36 -7.20 16 5 H -0.31 -8.24 7.11 56.52 0.40 -7.84 16 6 H -0.28 -7.30 6.95 56.52 0.39 -6.91 16 7 C -0.34 -9.42 8.46 -15.03 -0.13 -9.55 16 8 H 0.10 2.90 7.30 -52.48 -0.38 2.51 16 9 N -0.42 -10.41 2.45 -108.89 -0.27 -10.68 16 10 C 0.49 12.57 5.49 -12.44 -0.07 12.51 16 11 O -0.52 -15.37 12.31 5.26 0.06 -15.30 16 12 C 0.00 -0.01 5.27 -104.45 -0.55 -0.56 16 13 C -0.17 -2.91 7.66 -39.00 -0.30 -3.21 16 14 C 0.13 1.87 11.14 -17.57 -0.20 1.67 16 15 N -0.49 -7.52 10.35 -12.31 -0.13 -7.65 16 16 C 0.23 3.80 8.46 -155.64 -1.32 2.48 16 17 N -0.59 -7.06 6.23 -13.21 -0.08 -7.14 16 18 H 0.43 3.24 8.96 -40.82 -0.37 2.87 16 19 C 0.26 3.34 12.97 -89.67 -1.16 2.18 16 20 N -0.46 -9.00 11.23 -11.87 -0.13 -9.14 16 21 C 0.04 0.82 6.90 -84.60 -0.58 0.23 16 22 C 0.06 1.06 4.40 -67.93 -0.30 0.76 16 23 C -0.17 -2.88 9.81 -26.73 -0.26 -3.15 16 24 C -0.20 -3.26 9.42 -26.73 -0.25 -3.52 16 25 H 0.27 7.88 8.31 -40.82 -0.34 7.54 16 26 H 0.15 2.37 5.61 -52.48 -0.29 2.07 16 27 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 28 H 0.22 1.55 8.06 -52.48 -0.42 1.13 16 29 H 0.11 1.91 6.14 -51.93 -0.32 1.59 16 30 H 0.11 2.19 6.64 -51.93 -0.35 1.84 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.10 1.84 8.14 -51.93 -0.42 1.41 16 LS Contribution 280.01 15.07 4.22 4.22 Total: -1.00 -38.12 280.01 -7.91 -46.04 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -3.00 Total: 1.68 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -5.21 Total: 2.36 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: 0.16 Total: -60.08 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.06 Total: -15.30 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -4.15 Total: 21.08 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -38.12 -7.91 -46.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542356595.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.722 kcal (2) G-P(sol) polarization free energy of solvation -38.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds