Wall clock time and date at job start Mon Mar 30 2020 00:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31323 * 1 3 3 Si 1.86807 * 119.99704 * 2 1 4 4 H 1.48494 * 109.47159 * 275.38464 * 3 2 1 5 5 H 1.48503 * 109.46957 * 35.38657 * 3 2 1 6 6 H 1.48499 * 109.46947 * 155.38711 * 3 2 1 7 7 C 1.39103 * 120.00585 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99989 * 349.64175 * 7 2 1 9 9 N 1.36767 * 120.00617 * 169.64106 * 7 2 1 10 10 C 1.34778 * 120.00259 * 312.19969 * 9 7 2 11 11 O 1.21618 * 119.99484 * 2.88886 * 10 9 7 12 12 C 1.47590 * 120.00319 * 182.89424 * 10 9 7 13 13 C 1.39748 * 121.08295 * 318.75453 * 12 10 9 14 14 C 1.38277 * 119.36536 * 179.97438 * 13 12 10 15 15 N 1.31760 * 121.55970 * 0.02562 * 14 13 12 16 16 C 1.32137 * 121.96348 * 359.97438 * 15 14 13 17 17 N 1.37943 * 133.79793 * 180.02562 * 16 15 14 18 18 H 0.96996 * 126.35392 * 359.95879 * 17 16 15 19 19 C 1.35994 * 107.28323 * 179.97438 * 17 16 15 20 20 N 1.30293 * 110.04474 * 0.02562 * 19 17 16 21 21 C 1.34638 * 109.66419 * 359.97438 * 20 19 17 22 22 C 1.46502 * 120.00193 * 132.19299 * 9 7 2 23 23 C 1.53000 * 117.49790 * 3.81257 * 22 9 7 24 24 C 1.52999 * 60.00210 * 252.51044 * 23 22 9 25 25 H 0.96998 * 120.00113 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.31318 * 359.95948 * 13 12 10 27 27 H 1.08002 * 119.22033 * 180.02562 * 14 13 12 28 28 H 1.08003 * 124.97803 * 180.02562 * 19 17 16 29 29 H 1.08998 * 115.55190 * 149.52717 * 22 9 7 30 30 H 1.08994 * 117.49894 * 0.02562 * 23 22 9 31 31 H 1.09003 * 117.49439 * 145.02313 * 23 22 9 32 32 H 1.09000 * 117.49703 * 252.51173 * 24 23 22 33 33 H 1.09003 * 117.49813 * 107.49100 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6178 0.0000 4 1 2.3809 2.1122 -1.3938 5 1 1.5061 2.6172 0.8108 6 1 3.5970 1.4101 0.5831 7 6 2.0089 -1.2046 -0.0005 8 1 1.4821 -2.1325 0.1672 9 7 3.3598 -1.2142 -0.2135 10 6 3.8854 -0.5154 -1.2392 11 8 3.1647 0.1656 -1.9434 12 6 5.3353 -0.5767 -1.5078 13 6 6.2642 -0.5505 -0.4641 14 6 7.6144 -0.6104 -0.7563 15 7 8.0484 -0.6913 -1.9977 16 6 7.2209 -0.7201 -3.0275 17 7 7.3986 -0.7999 -4.3931 18 1 8.2469 -0.8523 -4.8605 19 6 6.1636 -0.7910 -4.9625 20 7 5.2471 -0.7109 -4.0399 21 6 5.8286 -0.6640 -2.8265 22 6 4.2358 -1.9838 0.6734 23 6 3.5722 -2.8268 1.7642 24 6 4.3208 -1.5456 2.1368 25 1 -0.4850 0.8400 -0.0004 26 1 5.9306 -0.4838 0.5610 27 1 8.3302 -0.5903 0.0522 28 1 5.9708 -0.8427 -6.0239 29 1 5.1415 -2.3786 0.2129 30 1 2.4839 -2.8091 1.8217 31 1 4.0412 -3.7766 2.0214 32 1 5.2822 -1.6524 2.6392 33 1 3.7249 -0.6846 2.4398 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001542356595.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:49 Heat of formation + Delta-G solvation = 80.750315 kcal Electronic energy + Delta-G solvation = -20976.504713 eV Core-core repulsion = 17811.189244 eV Total energy + Delta-G solvation = -3165.315470 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.40309 -41.12429 -39.10669 -38.11945 -35.12833 -34.61208 -33.53943 -32.33863 -30.74727 -27.60193 -25.48106 -24.25918 -23.62752 -22.94931 -22.67120 -21.40951 -19.89642 -18.84736 -18.51148 -17.88975 -17.39227 -16.80791 -16.55572 -16.24855 -15.68862 -15.46027 -15.08973 -14.82788 -14.76754 -14.67667 -13.73663 -13.67768 -13.50074 -12.94584 -12.48263 -12.22402 -12.20489 -12.03552 -11.93841 -11.61743 -11.24817 -10.95899 -10.79016 -10.16513 -9.86326 -9.59416 -9.40945 -8.47860 -6.30984 -0.54492 0.12912 1.14565 1.25628 1.44696 1.58825 1.77376 1.93160 2.35144 2.45290 2.78512 2.89834 3.18509 3.20223 3.44929 3.66843 3.77125 4.02715 4.06209 4.16770 4.24905 4.32587 4.47139 4.69372 4.89517 4.90709 4.98626 5.09965 5.25058 5.49006 5.54356 5.62867 5.82939 6.23779 6.64512 6.76324 6.79033 6.85657 7.20027 7.73990 8.58636 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020452 B = 0.008101 C = 0.006761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.711423 B = 3455.320985 C = 4140.421648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.044 3.956 3 Si 0.970 3.030 4 H -0.296 1.296 5 H -0.302 1.302 6 H -0.262 1.262 7 C -0.330 4.330 8 H 0.075 0.925 9 N -0.438 5.438 10 C 0.488 3.512 11 O -0.573 6.573 12 C -0.049 4.049 13 C -0.155 4.155 14 C 0.146 3.854 15 N -0.476 5.476 16 C 0.226 3.774 17 N -0.570 5.570 18 H 0.449 0.551 19 C 0.297 3.703 20 N -0.542 5.542 21 C 0.010 3.990 22 C 0.031 3.969 23 C -0.167 4.167 24 C -0.175 4.175 25 H 0.275 0.725 26 H 0.167 0.833 27 H 0.224 0.776 28 H 0.278 0.722 29 H 0.141 0.859 30 H 0.076 0.924 31 H 0.130 0.870 32 H 0.145 0.855 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.372 -3.905 -1.930 21.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.160 4.160 3 Si 0.802 3.198 4 H -0.225 1.225 5 H -0.232 1.232 6 H -0.186 1.186 7 C -0.457 4.457 8 H 0.092 0.908 9 N -0.157 5.157 10 C 0.280 3.720 11 O -0.458 6.458 12 C -0.062 4.062 13 C -0.178 4.178 14 C -0.020 4.020 15 N -0.190 5.190 16 C -0.011 4.011 17 N -0.187 5.187 18 H 0.293 0.707 19 C 0.010 3.990 20 N -0.262 5.262 21 C -0.113 4.113 22 C -0.073 4.073 23 C -0.204 4.204 24 C -0.213 4.213 25 H 0.084 0.916 26 H 0.184 0.816 27 H 0.240 0.760 28 H 0.294 0.706 29 H 0.158 0.842 30 H 0.095 0.905 31 H 0.148 0.852 32 H 0.163 0.837 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 20.786 -3.537 -2.594 21.243 hybrid contribution -0.547 0.872 -0.290 1.070 sum 20.239 -2.665 -2.884 20.617 Atomic orbital electron populations 1.69712 1.07735 1.28811 1.48243 1.26004 0.95554 1.01949 0.92526 0.85304 0.78891 0.79530 0.76047 1.22472 1.23187 1.18643 1.18641 0.81607 0.93969 1.51502 0.90762 1.43141 1.05865 1.43393 1.23305 1.18763 0.88063 0.84179 0.80992 1.90556 1.61893 1.43474 1.49923 1.19883 0.93573 1.00353 0.92345 1.22696 0.94000 1.01219 0.99859 1.23258 0.93526 0.92972 0.92196 1.66407 1.38421 1.15605 0.98571 1.19114 0.90173 1.04310 0.87538 1.42817 1.11607 1.61756 1.02491 0.70714 1.26640 0.76992 0.93917 1.01484 1.70218 1.34328 1.22681 0.98961 1.19518 0.92356 1.06619 0.92790 1.22340 0.96704 1.01439 0.86819 1.23211 1.00210 0.96169 1.00832 1.23440 1.03535 0.98214 0.96152 0.91563 0.81586 0.75995 0.70644 0.84151 0.90533 0.85150 0.83704 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.58 13.95 21.69 0.30 -58.27 16 2 C 0.04 2.75 5.08 84.98 0.43 3.18 16 3 Si 0.97 54.64 24.43 68.60 1.68 56.32 16 4 H -0.30 -18.45 6.42 99.48 0.64 -17.81 16 5 H -0.30 -16.13 7.11 99.48 0.71 -15.42 16 6 H -0.26 -13.55 6.95 99.48 0.69 -12.86 16 7 C -0.33 -19.51 8.46 84.13 0.71 -18.80 16 8 H 0.07 4.65 7.30 -2.91 -0.02 4.63 16 9 N -0.44 -22.04 2.45 -616.65 -1.51 -23.55 16 10 C 0.49 25.76 5.49 86.71 0.48 26.24 16 11 O -0.57 -35.97 12.31 -4.09 -0.05 -36.02 16 12 C -0.05 -2.03 5.27 -19.75 -0.10 -2.14 16 13 C -0.16 -4.65 7.66 22.64 0.17 -4.48 16 14 C 0.15 3.30 11.14 84.71 0.94 4.25 16 15 N -0.48 -12.53 10.35 -192.87 -2.00 -14.53 16 16 C 0.23 6.73 8.46 133.91 1.13 7.86 16 17 N -0.57 -11.47 6.23 -195.71 -1.22 -12.69 16 18 H 0.45 4.75 8.96 -92.71 -0.83 3.91 16 19 C 0.30 6.77 12.97 180.02 2.34 9.10 16 20 N -0.54 -21.06 11.23 -191.46 -2.15 -23.21 16 21 C 0.01 0.38 6.90 40.03 0.28 0.66 16 22 C 0.03 1.11 4.40 44.99 0.20 1.31 16 23 C -0.17 -5.37 9.81 30.59 0.30 -5.07 16 24 C -0.18 -5.21 9.42 30.60 0.29 -4.92 16 25 H 0.27 16.75 8.31 -92.71 -0.77 15.98 16 26 H 0.17 4.44 5.61 -2.91 -0.02 4.43 16 27 H 0.22 2.50 8.06 -2.91 -0.02 2.48 16 28 H 0.28 2.64 8.06 -2.91 -0.02 2.62 16 29 H 0.14 4.30 6.14 -2.39 -0.01 4.28 16 30 H 0.08 3.05 6.64 -2.39 -0.02 3.04 16 31 H 0.13 3.08 8.14 -2.39 -0.02 3.06 16 32 H 0.15 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -93.63 280.01 2.48 -91.16 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: 0.26 Total: 3.60 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 7.16 Total: 17.19 kcal Atomic # 7 Polarization: -125.67 SS G_CDS: -6.57 Total: -132.24 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -0.05 Total: -36.02 kcal Atomic # 14 Polarization: 54.64 SS G_CDS: 1.68 Total: 56.32 kcal Total: -93.63 2.48 -91.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542356595.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.906 kcal (2) G-P(sol) polarization free energy of solvation -93.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds