Wall clock time and date at job start Mon Mar 30 2020 00:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31373 * 1 3 3 Si 1.86796 * 119.99959 * 2 1 4 4 H 1.48502 * 109.47261 * 84.38532 * 3 2 1 5 5 H 1.48507 * 109.47385 * 204.38781 * 3 2 1 6 6 H 1.48498 * 109.47211 * 324.38459 * 3 2 1 7 7 C 1.39029 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00006 * 10.69457 * 7 2 1 9 9 N 1.36899 * 119.99850 * 190.69103 * 7 2 1 10 10 C 1.34781 * 120.00384 * 46.11496 * 9 7 2 11 11 O 1.21605 * 119.99393 * 354.46728 * 10 9 7 12 12 C 1.47576 * 120.00136 * 174.47303 * 10 9 7 13 13 C 1.40053 * 120.38931 * 154.88014 * 12 10 9 14 14 N 1.31373 * 121.14870 * 179.97438 * 13 12 10 15 15 C 1.32553 * 121.80467 * 0.02577 * 14 13 12 16 16 N 1.37595 * 133.55698 * 180.02562 * 15 14 13 17 17 H 0.96998 * 126.24055 * 359.96748 * 16 15 14 18 18 C 1.36169 * 107.52028 * 179.97438 * 16 15 14 19 19 N 1.30058 * 110.12050 * 359.97438 * 18 16 15 20 20 C 1.35784 * 109.43231 * 0.02562 * 19 18 16 21 21 C 1.39475 * 133.73881 * 180.33543 * 20 19 18 22 22 C 1.46509 * 119.99992 * 226.10907 * 9 7 2 23 23 C 1.53001 * 117.49793 * 2.75646 * 22 9 7 24 24 C 1.52993 * 117.49986 * 294.13128 * 22 9 7 25 25 H 0.97001 * 120.00376 * 359.97438 * 1 2 3 26 26 H 1.07993 * 119.42602 * 359.97438 * 13 12 10 27 27 H 1.08005 * 124.93980 * 179.97438 * 18 16 15 28 28 H 1.08005 * 120.97943 * 359.90366 * 21 20 19 29 29 H 1.09003 * 115.54835 * 148.45868 * 22 9 7 30 30 H 1.09002 * 117.49551 * 0.02562 * 23 22 9 31 31 H 1.08992 * 117.49690 * 145.01810 * 23 22 9 32 32 H 1.08999 * 117.50107 * 214.97997 * 24 22 9 33 33 H 1.09003 * 117.49974 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.3766 2.1149 1.3934 5 1 3.5996 1.4089 -0.5781 6 1 1.5095 2.6155 -0.8153 7 6 2.0089 -1.2040 -0.0005 8 1 1.4830 -2.1311 -0.1745 9 7 3.3601 -1.2143 0.2194 10 6 3.8840 -0.4923 1.2297 11 8 3.1716 0.2463 1.8823 12 6 5.3221 -0.5978 1.5438 13 6 5.9873 0.4569 2.1813 14 7 7.2669 0.3787 2.4683 15 6 7.9854 -0.6945 2.1701 16 7 9.3069 -1.0316 2.3527 17 1 9.9870 -0.4801 2.7699 18 6 9.4859 -2.2806 1.8407 19 7 8.3654 -2.7311 1.3580 20 6 7.3928 -1.7990 1.5286 21 6 6.0348 -1.7535 1.2138 22 6 4.2366 -2.0104 -0.6434 23 6 3.5895 -2.7567 -1.8118 24 6 4.0874 -3.5322 -0.5904 25 1 -0.4851 0.8400 0.0004 26 1 5.4389 1.3501 2.4414 27 1 10.4223 -2.8189 1.8360 28 1 5.5491 -2.5857 0.7259 29 1 5.2381 -1.6079 -0.7956 30 1 2.5117 -2.6550 -1.9388 31 1 4.1652 -2.8452 -2.7331 32 1 4.9906 -4.1308 -0.7082 33 1 3.3374 -3.9411 0.0866 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001544034998.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:42 Heat of formation + Delta-G solvation = 112.300388 kcal Electronic energy + Delta-G solvation = -20774.546760 eV Core-core repulsion = 17610.599404 eV Total energy + Delta-G solvation = -3163.947356 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.30663 -39.69993 -37.72307 -36.59256 -33.67739 -33.04882 -31.81814 -30.93748 -29.63555 -25.50951 -24.30491 -23.22324 -22.09585 -21.54507 -21.48068 -19.77608 -18.59074 -17.82560 -17.03326 -16.21793 -15.85753 -15.63240 -14.99027 -14.69414 -14.32789 -13.90314 -13.83404 -13.43688 -12.96333 -12.59781 -12.48308 -12.37994 -11.54711 -11.18935 -11.12888 -11.04199 -10.97728 -10.29821 -10.12745 -9.97789 -9.82342 -9.32210 -8.79913 -8.68735 -8.54533 -8.29449 -7.59708 -6.23466 -4.10587 0.85390 1.09031 2.50095 2.73518 3.24047 3.48848 3.63723 3.73069 3.99716 4.09448 4.21865 4.42384 4.46281 4.61577 4.77751 5.00430 5.13273 5.13815 5.30492 5.37096 5.44285 5.56399 5.73634 5.84376 6.08556 6.20892 6.22451 6.25972 6.54495 6.63562 6.81353 7.02258 7.62080 7.74373 7.83745 7.94849 8.62862 8.74177 9.30263 9.63959 10.78276 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.024525 B = 0.007086 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.410063 B = 3950.602966 C = 4828.351509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.084 3.916 3 Si 0.940 3.060 4 H -0.256 1.256 5 H -0.288 1.288 6 H -0.317 1.317 7 C -0.342 4.342 8 H 0.100 0.900 9 N -0.419 5.419 10 C 0.494 3.506 11 O -0.537 6.537 12 C -0.167 4.167 13 C 0.187 3.813 14 N -0.493 5.493 15 C 0.242 3.758 16 N -0.592 5.592 17 H 0.426 0.574 18 C 0.264 3.736 19 N -0.481 5.481 20 C -0.009 4.009 21 C -0.007 4.007 22 C 0.052 3.948 23 C -0.166 4.166 24 C -0.203 4.203 25 H 0.275 0.725 26 H 0.175 0.825 27 H 0.223 0.777 28 H 0.167 0.833 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.245 -4.028 0.811 18.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.126 4.126 3 Si 0.774 3.226 4 H -0.182 1.182 5 H -0.214 1.214 6 H -0.249 1.249 7 C -0.468 4.468 8 H 0.118 0.882 9 N -0.137 5.137 10 C 0.286 3.714 11 O -0.422 6.422 12 C -0.175 4.175 13 C 0.019 3.981 14 N -0.206 5.206 15 C 0.006 3.994 16 N -0.207 5.207 17 H 0.266 0.734 18 C -0.024 4.024 19 N -0.201 5.201 20 C -0.128 4.128 21 C -0.035 4.035 22 C -0.053 4.053 23 C -0.203 4.203 24 C -0.241 4.241 25 H 0.085 0.915 26 H 0.192 0.808 27 H 0.239 0.761 28 H 0.184 0.816 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 17.951 -3.763 1.122 18.376 hybrid contribution 0.640 1.028 0.144 1.219 sum 18.591 -2.736 1.266 18.834 Atomic orbital electron populations 1.69667 1.06853 1.28570 1.44860 1.25499 0.95190 1.00112 0.91755 0.85726 0.78173 0.80961 0.77712 1.18234 1.21393 1.24865 1.18789 0.79116 0.95495 1.53400 0.88234 1.43017 1.06695 1.40636 1.23370 1.17830 0.85803 0.85690 0.82122 1.90526 1.60191 1.39626 1.51853 1.21084 0.96523 0.95906 1.03999 1.22783 0.87024 0.97769 0.90521 1.66479 1.07718 1.24025 1.22345 1.19182 0.86324 0.93667 1.00242 1.42776 1.08263 1.17331 1.52360 0.73442 1.25401 0.99481 0.82766 0.94764 1.70449 0.98331 1.28983 1.22297 1.19589 0.95159 0.92805 1.05219 1.21800 0.89792 0.98397 0.93508 1.22124 0.95362 0.90131 0.97690 1.23238 1.03086 1.02276 0.91712 1.23440 1.03436 0.94535 1.02733 0.91542 0.80782 0.76099 0.81604 0.86902 0.86674 0.89136 0.88788 0.88245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.87 13.95 55.50 0.77 -25.09 16 2 C 0.08 2.43 5.08 -17.45 -0.09 2.34 16 3 Si 0.94 25.00 24.29 -169.99 -4.13 20.87 16 4 H -0.26 -7.02 6.32 56.52 0.36 -6.67 16 5 H -0.29 -7.45 6.91 56.52 0.39 -7.06 16 6 H -0.32 -8.28 7.11 56.52 0.40 -7.88 16 7 C -0.34 -9.36 8.42 -15.00 -0.13 -9.49 16 8 H 0.10 2.82 7.49 -52.49 -0.39 2.43 16 9 N -0.42 -10.02 2.48 -108.88 -0.27 -10.29 16 10 C 0.49 11.92 5.70 -12.45 -0.07 11.85 16 11 O -0.54 -14.66 11.41 5.27 0.06 -14.60 16 12 C -0.17 -3.33 5.56 -104.85 -0.58 -3.91 16 13 C 0.19 3.46 10.74 -17.07 -0.18 3.28 16 14 N -0.49 -8.36 10.36 -11.94 -0.12 -8.48 16 15 C 0.24 3.71 8.45 -155.61 -1.31 2.39 16 16 N -0.59 -6.02 6.20 -13.21 -0.08 -6.10 16 17 H 0.43 2.78 8.96 -40.82 -0.37 2.41 16 18 C 0.26 2.45 12.97 -89.70 -1.16 1.29 16 19 N -0.48 -6.72 11.29 -12.02 -0.14 -6.86 16 20 C -0.01 -0.14 7.23 -84.69 -0.61 -0.75 16 21 C -0.01 -0.13 7.80 -38.56 -0.30 -0.43 16 22 C 0.05 0.99 4.22 -67.93 -0.29 0.71 16 23 C -0.17 -2.82 9.80 -26.73 -0.26 -3.08 16 24 C -0.20 -3.27 8.91 -26.73 -0.24 -3.51 16 25 H 0.27 7.75 8.31 -40.82 -0.34 7.41 16 26 H 0.18 3.10 7.84 -52.49 -0.41 2.69 16 27 H 0.22 0.76 8.06 -52.48 -0.42 0.34 16 28 H 0.17 2.82 3.93 -52.48 -0.21 2.62 16 29 H 0.11 1.99 6.15 -51.93 -0.32 1.68 16 30 H 0.12 2.22 6.75 -51.93 -0.35 1.87 16 31 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.09 1.26 8.10 -51.93 -0.42 0.84 16 33 H 0.10 1.73 8.14 -51.93 -0.42 1.30 16 LS Contribution 277.09 15.07 4.18 4.18 Total: -1.00 -34.99 277.09 -7.89 -42.88 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -2.93 Total: 2.84 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -5.23 Total: 0.67 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.16 Total: -56.83 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.06 Total: -14.60 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -4.13 Total: 20.87 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -34.99 -7.89 -42.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544034998.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.176 kcal (2) G-P(sol) polarization free energy of solvation -34.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds