Wall clock time and date at job start Mon Mar 30 2020 00:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31373 * 1 3 3 Si 1.86796 * 119.99959 * 2 1 4 4 H 1.48502 * 109.47261 * 84.38532 * 3 2 1 5 5 H 1.48507 * 109.47385 * 204.38781 * 3 2 1 6 6 H 1.48498 * 109.47211 * 324.38459 * 3 2 1 7 7 C 1.39029 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00006 * 10.69457 * 7 2 1 9 9 N 1.36899 * 119.99850 * 190.69103 * 7 2 1 10 10 C 1.34781 * 120.00384 * 46.11496 * 9 7 2 11 11 O 1.21605 * 119.99393 * 354.46728 * 10 9 7 12 12 C 1.47576 * 120.00136 * 174.47303 * 10 9 7 13 13 C 1.40053 * 120.38931 * 154.88014 * 12 10 9 14 14 N 1.31373 * 121.14870 * 179.97438 * 13 12 10 15 15 C 1.32553 * 121.80467 * 0.02577 * 14 13 12 16 16 N 1.37595 * 133.55698 * 180.02562 * 15 14 13 17 17 H 0.96998 * 126.24055 * 359.96748 * 16 15 14 18 18 C 1.36169 * 107.52028 * 179.97438 * 16 15 14 19 19 N 1.30058 * 110.12050 * 359.97438 * 18 16 15 20 20 C 1.35784 * 109.43231 * 0.02562 * 19 18 16 21 21 C 1.39475 * 133.73881 * 180.33543 * 20 19 18 22 22 C 1.46509 * 119.99992 * 226.10907 * 9 7 2 23 23 C 1.53001 * 117.49793 * 2.75646 * 22 9 7 24 24 C 1.52993 * 117.49986 * 294.13128 * 22 9 7 25 25 H 0.97001 * 120.00376 * 359.97438 * 1 2 3 26 26 H 1.07993 * 119.42602 * 359.97438 * 13 12 10 27 27 H 1.08005 * 124.93980 * 179.97438 * 18 16 15 28 28 H 1.08005 * 120.97943 * 359.90366 * 21 20 19 29 29 H 1.09003 * 115.54835 * 148.45868 * 22 9 7 30 30 H 1.09002 * 117.49551 * 0.02562 * 23 22 9 31 31 H 1.08992 * 117.49690 * 145.01810 * 23 22 9 32 32 H 1.08999 * 117.50107 * 214.97997 * 24 22 9 33 33 H 1.09003 * 117.49974 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.3766 2.1149 1.3934 5 1 3.5996 1.4089 -0.5781 6 1 1.5095 2.6155 -0.8153 7 6 2.0089 -1.2040 -0.0005 8 1 1.4830 -2.1311 -0.1745 9 7 3.3601 -1.2143 0.2194 10 6 3.8840 -0.4923 1.2297 11 8 3.1716 0.2463 1.8823 12 6 5.3221 -0.5978 1.5438 13 6 5.9873 0.4569 2.1813 14 7 7.2669 0.3787 2.4683 15 6 7.9854 -0.6945 2.1701 16 7 9.3069 -1.0316 2.3527 17 1 9.9870 -0.4801 2.7699 18 6 9.4859 -2.2806 1.8407 19 7 8.3654 -2.7311 1.3580 20 6 7.3928 -1.7990 1.5286 21 6 6.0348 -1.7535 1.2138 22 6 4.2366 -2.0104 -0.6434 23 6 3.5895 -2.7567 -1.8118 24 6 4.0874 -3.5322 -0.5904 25 1 -0.4851 0.8400 0.0004 26 1 5.4389 1.3501 2.4414 27 1 10.4223 -2.8189 1.8360 28 1 5.5491 -2.5857 0.7259 29 1 5.2381 -1.6079 -0.7956 30 1 2.5117 -2.6550 -1.9388 31 1 4.1652 -2.8452 -2.7331 32 1 4.9906 -4.1308 -0.7082 33 1 3.3374 -3.9411 0.0866 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001544034998.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:41 Heat of formation + Delta-G solvation = 87.347551 kcal Electronic energy + Delta-G solvation = -20775.628796 eV Core-core repulsion = 17610.599404 eV Total energy + Delta-G solvation = -3165.029392 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.40232 -41.37191 -39.05983 -38.27053 -35.11609 -34.75023 -33.56181 -32.38556 -30.86135 -27.40061 -25.56434 -24.63406 -23.43734 -22.98184 -22.68888 -21.47888 -19.80866 -19.39189 -18.46678 -17.79563 -17.38124 -16.83812 -16.63331 -16.31405 -15.81699 -15.53346 -15.14187 -14.91059 -14.69639 -14.40909 -13.99575 -13.73917 -13.31076 -13.04092 -12.57024 -12.30745 -12.18334 -12.11847 -12.06131 -11.64085 -11.38962 -10.83260 -10.76330 -10.26597 -9.88606 -9.67700 -9.45421 -8.42985 -6.28789 -0.37599 -0.25101 1.25208 1.34550 1.51736 1.54070 1.75254 1.92652 2.41529 2.45912 2.67793 2.91233 2.98828 3.16230 3.34870 3.66183 3.74500 3.77890 3.94280 4.05463 4.21089 4.24976 4.35388 4.72400 4.82732 4.88765 4.91007 4.94255 5.17769 5.37011 5.41921 5.64612 5.80099 6.16969 6.59307 6.65307 6.73235 6.76427 7.21043 7.69079 8.62383 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.024525 B = 0.007086 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.410063 B = 3950.602966 C = 4828.351509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.039 3.961 3 Si 0.985 3.015 4 H -0.276 1.276 5 H -0.280 1.280 6 H -0.313 1.313 7 C -0.334 4.334 8 H 0.079 0.921 9 N -0.435 5.435 10 C 0.494 3.506 11 O -0.579 6.579 12 C -0.189 4.189 13 C 0.174 3.826 14 N -0.491 5.491 15 C 0.233 3.767 16 N -0.575 5.575 17 H 0.447 0.553 18 C 0.308 3.692 19 N -0.518 5.518 20 C -0.014 4.014 21 C -0.001 4.001 22 C 0.028 3.972 23 C -0.161 4.161 24 C -0.176 4.176 25 H 0.275 0.725 26 H 0.169 0.831 27 H 0.288 0.712 28 H 0.171 0.829 29 H 0.132 0.868 30 H 0.085 0.915 31 H 0.128 0.872 32 H 0.134 0.866 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.287 -5.630 0.538 23.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.165 4.165 3 Si 0.819 3.181 4 H -0.204 1.204 5 H -0.206 1.206 6 H -0.245 1.245 7 C -0.461 4.461 8 H 0.097 0.903 9 N -0.153 5.153 10 C 0.287 3.713 11 O -0.467 6.467 12 C -0.197 4.197 13 C 0.006 3.994 14 N -0.204 5.204 15 C -0.005 4.005 16 N -0.191 5.191 17 H 0.290 0.710 18 C 0.020 3.980 19 N -0.238 5.238 20 C -0.133 4.133 21 C -0.029 4.029 22 C -0.076 4.076 23 C -0.198 4.198 24 C -0.215 4.215 25 H 0.085 0.915 26 H 0.186 0.814 27 H 0.303 0.697 28 H 0.188 0.812 29 H 0.149 0.851 30 H 0.103 0.897 31 H 0.146 0.854 32 H 0.152 0.848 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 23.047 -5.376 0.836 23.681 hybrid contribution -0.568 1.320 0.328 1.474 sum 22.479 -4.056 1.163 22.871 Atomic orbital electron populations 1.69735 1.07774 1.28932 1.48075 1.26070 0.95667 1.02348 0.92408 0.85002 0.77706 0.78965 0.76455 1.20408 1.20564 1.24451 1.18642 0.81130 0.94304 1.51976 0.90312 1.43124 1.06057 1.41647 1.24462 1.18495 0.87550 0.84094 0.81173 1.90470 1.61832 1.41355 1.53048 1.20633 0.94221 0.97949 1.06902 1.22625 0.87830 0.97562 0.91385 1.66491 1.06967 1.24756 1.22180 1.19514 0.88325 0.92920 0.99766 1.42911 1.06619 1.17910 1.51683 0.70968 1.26793 1.00057 0.81401 0.89704 1.70509 0.99118 1.29126 1.25019 1.19676 0.95052 0.93787 1.04818 1.21741 0.90673 0.97441 0.93014 1.22359 0.95419 0.91262 0.98583 1.23293 1.01805 1.01561 0.93191 1.23463 1.04238 0.92581 1.01182 0.91544 0.81426 0.69705 0.81161 0.85085 0.89682 0.85378 0.84802 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.98 13.95 21.68 0.30 -56.68 16 2 C 0.04 2.39 5.08 84.95 0.43 2.82 16 3 Si 0.98 53.74 24.29 68.60 1.67 55.40 16 4 H -0.28 -15.81 6.32 99.48 0.63 -15.19 16 5 H -0.28 -14.61 6.91 99.48 0.69 -13.92 16 6 H -0.31 -16.50 7.11 99.48 0.71 -15.80 16 7 C -0.33 -19.03 8.42 84.09 0.71 -18.32 16 8 H 0.08 4.72 7.49 -2.91 -0.02 4.70 16 9 N -0.44 -21.23 2.48 -616.64 -1.53 -22.76 16 10 C 0.49 24.50 5.70 86.71 0.49 24.99 16 11 O -0.58 -33.03 11.41 -4.05 -0.05 -33.08 16 12 C -0.19 -7.55 5.56 -20.01 -0.11 -7.66 16 13 C 0.17 6.45 10.74 85.20 0.92 7.36 16 14 N -0.49 -15.87 10.36 -191.69 -1.99 -17.85 16 15 C 0.23 6.37 8.45 133.90 1.13 7.51 16 16 N -0.57 -8.59 6.20 -195.71 -1.21 -9.80 16 17 H 0.45 3.27 8.96 -92.71 -0.83 2.44 16 18 C 0.31 3.68 12.97 180.03 2.33 6.01 16 19 N -0.52 -11.90 11.29 -191.93 -2.17 -14.07 16 20 C -0.01 -0.42 7.23 39.46 0.29 -0.14 16 21 C 0.00 -0.05 7.80 22.93 0.18 0.13 16 22 C 0.03 1.03 4.22 44.99 0.19 1.22 16 23 C -0.16 -5.27 9.80 30.60 0.30 -4.97 16 24 C -0.18 -5.34 8.91 30.59 0.27 -5.07 16 25 H 0.28 16.32 8.31 -92.71 -0.77 15.55 16 26 H 0.17 6.24 7.84 -2.91 -0.02 6.21 16 27 H 0.29 -0.60 8.06 -2.91 -0.02 -0.62 16 28 H 0.17 5.46 3.93 -2.91 -0.01 5.45 16 29 H 0.13 4.38 6.15 -2.39 -0.01 4.36 16 30 H 0.08 3.34 6.75 -2.39 -0.02 3.33 16 31 H 0.13 3.20 8.14 -2.39 -0.02 3.18 16 32 H 0.13 3.02 8.10 -2.39 -0.02 3.00 16 33 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -81.90 277.09 2.41 -79.49 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 0.25 Total: 5.48 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 7.13 Total: 13.88 kcal Atomic # 7 Polarization: -114.57 SS G_CDS: -6.60 Total: -121.16 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -0.05 Total: -33.08 kcal Atomic # 14 Polarization: 53.74 SS G_CDS: 1.67 Total: 55.40 kcal Total: -81.90 2.41 -79.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544034998.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.836 kcal (2) G-P(sol) polarization free energy of solvation -81.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds