Wall clock time and date at job start Mon Mar 30 2020 01:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40515 * 127.03243 * 2 1 4 4 H 0.97005 * 126.60343 * 359.97438 * 3 2 1 5 5 C 1.35074 * 106.79075 * 179.97438 * 3 2 1 6 6 N 1.30751 * 109.40042 * 359.76286 * 5 3 2 7 7 C 1.34267 * 110.10847 * 0.39303 * 6 5 3 8 8 N 1.32837 * 126.12033 * 179.88126 * 7 6 5 9 9 C 1.33925 * 119.99637 * 359.68663 * 8 7 6 10 10 O 1.21894 * 120.00227 * 359.97438 * 9 8 7 11 11 C 1.47714 * 119.99744 * 180.02562 * 9 8 7 12 12 C 1.39146 * 120.27574 * 356.71108 * 11 9 8 13 13 C 1.38205 * 120.10203 * 180.28534 * 12 11 9 14 14 C 1.38852 * 120.66920 * 359.73456 * 13 12 11 15 15 C 1.37551 * 120.55756 * 359.97438 * 14 13 12 16 16 C 1.40731 * 119.87249 * 0.02562 * 15 14 13 17 17 C 1.40882 * 120.32417 * 179.97438 * 16 15 14 18 18 H 1.08011 * 119.99801 * 215.83874 * 17 16 15 19 19 C 1.40264 * 120.00144 * 35.83627 * 17 16 15 20 20 N 1.30638 * 119.99696 * 190.88995 * 19 17 16 21 21 Si 1.86796 * 120.00178 * 10.89876 * 19 17 16 22 22 H 1.48506 * 109.46862 * 267.48798 * 21 19 17 23 23 H 1.48503 * 109.47233 * 27.48257 * 21 19 17 24 24 H 1.48496 * 109.47533 * 147.48895 * 21 19 17 25 25 H 1.09003 * 109.47359 * 270.04188 * 1 2 3 26 26 H 1.08996 * 109.47385 * 30.04158 * 1 2 3 27 27 H 1.08999 * 109.47495 * 150.04577 * 1 2 3 28 28 H 1.08003 * 125.29762 * 180.02562 * 5 3 2 29 29 H 1.08006 * 119.95325 * 0.02562 * 12 11 9 30 30 H 1.07994 * 119.66507 * 179.75993 * 13 12 11 31 31 H 1.08001 * 119.71954 * 180.02562 * 14 13 12 32 32 H 1.08000 * 120.06201 * 180.02562 * 15 14 13 33 33 H 0.97002 * 119.99345 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3112 1.1217 0.0000 4 1 2.0379 2.0525 -0.0003 5 6 3.5786 0.6544 0.0006 6 7 3.5594 -0.6530 0.0060 7 6 2.2919 -1.0960 0.0006 8 7 1.9068 -2.3674 0.0015 9 6 2.8228 -3.3444 0.0021 10 8 4.0097 -3.0671 0.0013 11 6 2.3946 -4.7581 0.0026 12 6 1.0430 -5.0817 0.0714 13 6 0.6467 -6.4057 0.0776 14 6 1.5856 -7.4264 0.0100 15 6 2.9284 -7.1375 -0.0648 16 6 3.3577 -5.7973 -0.0727 17 6 4.7306 -5.4906 -0.1486 18 1 5.1244 -4.6400 0.3881 19 6 5.5862 -6.2900 -0.9209 20 7 6.8807 -6.1417 -0.8265 21 14 4.8747 -7.5663 -2.0844 22 1 4.7771 -8.8732 -1.3859 23 1 3.5222 -7.1373 -2.5227 24 1 5.7588 -7.7034 -3.2696 25 1 -0.3634 0.0008 1.0277 26 1 -0.3634 0.8896 -0.5144 27 1 -0.3634 -0.8904 -0.5131 28 1 4.4691 1.2655 0.0011 29 1 0.3026 -4.2971 0.1243 30 1 -0.4040 -6.6489 0.1351 31 1 1.2588 -8.4558 0.0155 32 1 3.6518 -7.9377 -0.1175 33 1 7.4723 -6.6942 -1.3609 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001546021757.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:31 Heat of formation + Delta-G solvation = 130.529479 kcal Electronic energy + Delta-G solvation = -20137.830852 eV Core-core repulsion = 16974.673969 eV Total energy + Delta-G solvation = -3163.156883 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.90356 -38.36596 -36.65712 -34.09248 -33.63762 -33.24598 -30.78281 -30.14549 -29.51923 -27.22067 -25.17046 -22.88704 -22.75729 -21.39236 -20.30817 -19.05074 -17.91218 -17.22608 -16.10772 -15.98584 -15.47990 -15.18020 -14.87704 -14.32160 -13.76116 -13.51188 -13.25829 -13.08070 -12.87986 -12.67019 -12.32295 -11.77991 -11.34520 -10.72070 -10.65502 -10.45229 -10.32499 -10.14750 -10.11949 -9.95226 -9.56531 -9.22363 -9.01072 -7.82300 -7.55490 -7.40680 -7.27093 -6.66135 -4.21735 1.17404 1.26173 2.43366 2.88682 3.22087 3.24904 3.36994 3.47235 3.65184 4.15602 4.42756 4.59897 4.68174 4.94172 5.04690 5.14536 5.28168 5.42012 5.75974 5.94748 6.17335 6.30557 6.35107 6.53505 6.89009 7.01417 7.08113 7.36973 7.42146 7.62774 7.77365 7.90171 7.96395 8.16088 8.34327 8.51080 8.77730 8.91481 9.14566 9.88643 10.29511 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.022097 B = 0.006097 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.810373 B = 4591.412572 C = 5625.149124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.429 5.429 3 N -0.512 5.512 4 H 0.444 0.556 5 C 0.353 3.647 6 N -0.517 5.517 7 C 0.581 3.419 8 N -0.631 5.631 9 C 0.525 3.475 10 O -0.502 6.502 11 C -0.217 4.217 12 C -0.022 4.022 13 C -0.264 4.264 14 C -0.068 4.068 15 C -0.234 4.234 16 C 0.111 3.889 17 C -0.403 4.403 18 H 0.124 0.876 19 C 0.079 3.921 20 N -0.801 5.801 21 Si 0.906 3.094 22 H -0.270 1.270 23 H -0.243 1.243 24 H -0.292 1.292 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.234 0.766 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.316 15.891 0.030 18.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.239 5.239 3 N -0.241 5.241 4 H 0.291 0.709 5 C 0.056 3.944 6 N -0.250 5.250 7 C 0.222 3.778 8 N -0.391 5.391 9 C 0.316 3.684 10 O -0.377 6.377 11 C -0.222 4.222 12 C -0.041 4.041 13 C -0.283 4.283 14 C -0.086 4.086 15 C -0.253 4.253 16 C 0.107 3.893 17 C -0.430 4.430 18 H 0.141 0.859 19 C -0.140 4.140 20 N -0.425 5.425 21 Si 0.733 3.267 22 H -0.196 1.196 23 H -0.166 1.166 24 H -0.219 1.219 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.124 0.876 28 H 0.250 0.750 29 H 0.125 0.875 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.724 14.866 -0.014 17.764 hybrid contribution -0.392 0.592 -0.547 0.896 sum -10.116 15.458 -0.561 18.482 Atomic orbital electron populations 1.21841 0.72233 1.04534 1.03114 1.47615 1.03638 0.97411 1.75255 1.45195 1.03199 1.02970 1.72692 0.70858 1.26165 0.86708 0.93101 0.88469 1.72235 1.19651 1.07075 1.26020 1.21050 0.81088 0.88638 0.87036 1.69536 1.38664 0.93570 1.37356 1.19109 0.84925 0.87769 0.76606 1.90804 1.19611 1.84801 1.42485 1.19288 0.92948 0.90906 1.19052 1.20922 0.94842 0.95107 0.93183 1.20353 0.97196 0.93007 1.17734 1.20696 0.93467 0.97139 0.97335 1.21060 0.94932 0.96037 1.13302 1.17660 0.93271 0.90042 0.88368 1.20204 0.90014 1.10644 1.22124 0.85874 1.26344 0.94434 0.96004 0.97190 1.69596 1.04042 1.34922 1.33976 0.86413 0.80746 0.80365 0.79186 1.19607 1.16636 1.21946 0.91423 0.90834 0.87581 0.75009 0.87459 0.88892 0.88961 0.88067 0.90634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.02 11.51 59.84 0.69 1.71 16 2 N -0.43 -5.28 4.13 -68.90 -0.28 -5.57 16 3 N -0.51 -3.95 7.36 29.64 0.22 -3.73 16 4 H 0.44 1.11 8.96 -182.28 -1.63 -0.53 16 5 C 0.35 3.57 13.06 -90.14 -1.18 2.40 16 6 N -0.52 -9.62 9.19 -14.92 -0.14 -9.76 16 7 C 0.58 11.08 8.40 -321.63 -2.70 8.38 16 8 N -0.63 -14.45 9.58 -14.00 -0.13 -14.59 16 9 C 0.52 14.38 7.65 -12.77 -0.10 14.29 16 10 O -0.50 -15.16 12.07 5.01 0.06 -15.10 16 11 C -0.22 -5.97 5.93 -104.29 -0.62 -6.59 16 12 C -0.02 -0.53 9.57 -39.26 -0.38 -0.90 16 13 C -0.26 -5.96 10.03 -39.37 -0.39 -6.35 16 14 C -0.07 -1.59 10.01 -39.61 -0.40 -1.98 16 15 C -0.23 -6.16 7.02 -38.89 -0.27 -6.43 16 16 C 0.11 3.21 5.04 -106.56 -0.54 2.67 16 17 C -0.40 -12.40 8.32 -37.82 -0.31 -12.71 16 18 H 0.12 4.19 5.95 -52.48 -0.31 3.88 16 19 C 0.08 2.30 5.47 -17.30 -0.09 2.20 16 20 N -0.80 -23.34 13.92 55.56 0.77 -22.57 16 21 Si 0.91 22.61 24.51 -169.99 -4.17 18.44 16 22 H -0.27 -6.39 6.74 56.52 0.38 -6.01 16 23 H -0.24 -6.27 6.75 56.52 0.38 -5.89 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.23 0.96 8.06 -52.48 -0.42 0.54 16 29 H 0.11 2.32 7.54 -52.48 -0.40 1.93 16 30 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.10 2.60 4.96 -52.49 -0.26 2.34 16 33 H 0.28 7.41 8.29 -40.82 -0.34 7.08 16 LS Contribution 287.65 15.07 4.33 4.33 Total: -1.00 -41.77 287.65 -9.94 -51.71 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -4.31 Total: 0.15 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -6.29 Total: -3.33 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.44 Total: -56.21 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.06 Total: -15.10 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.17 Total: 18.44 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -41.77 -9.94 -51.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546021757.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.242 kcal (2) G-P(sol) polarization free energy of solvation -41.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds