Wall clock time and date at job start Mon Mar 30 2020 00:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99886 * 2 1 4 4 H 1.48499 * 109.47372 * 240.00538 * 3 2 1 5 5 H 1.48507 * 109.46953 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47454 * 120.00023 * 3 2 1 7 7 C 1.37877 * 120.00464 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00380 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99932 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47303 * 180.02562 * 9 7 2 11 11 C 1.34782 * 120.00062 * 179.97438 * 10 9 7 12 12 O 1.21606 * 120.00124 * 0.02562 * 11 10 9 13 13 C 1.47419 * 119.99745 * 180.02562 * 11 10 9 14 14 C 1.41361 * 126.41026 * 359.97438 * 13 11 10 15 15 N 1.30454 * 108.07755 * 180.02562 * 14 13 11 16 16 N 1.39940 * 108.91421 * 0.02562 * 15 14 13 17 17 C 1.39914 * 125.77105 * 180.02562 * 16 15 14 18 18 C 1.39328 * 120.85196 * 179.74042 * 17 16 15 19 19 C 1.38000 * 119.08046 * 179.74752 * 18 17 16 20 20 N 1.31940 * 120.83229 * 0.53657 * 19 18 17 21 21 C 1.31935 * 121.88292 * 359.73803 * 20 19 18 22 22 C 1.38000 * 120.83444 * 359.97431 * 21 20 19 23 23 C 1.34600 * 108.44665 * 359.97438 * 16 15 14 24 24 H 0.96998 * 120.00392 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47240 * 59.99960 * 9 7 2 26 26 H 1.09005 * 109.47305 * 300.00741 * 9 7 2 27 27 H 0.97003 * 120.00246 * 0.02562 * 10 9 7 28 28 H 1.08001 * 125.96554 * 0.05695 * 14 13 11 29 29 H 1.08007 * 120.45900 * 359.97438 * 18 17 16 30 30 H 1.08001 * 119.58498 * 180.24822 * 19 18 17 31 31 H 1.08002 * 119.58134 * 180.02562 * 21 20 19 32 32 H 1.07997 * 120.46257 * 180.02562 * 22 21 20 33 33 H 1.08000 * 126.31054 * 180.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7540 -4.8833 0.0000 12 8 0.5584 -5.1056 0.0000 13 6 2.7121 -6.0037 0.0006 14 6 4.1221 -5.9021 0.0001 15 7 4.6150 -7.1099 0.0003 16 7 3.5607 -8.0301 0.0003 17 6 3.6910 -9.4232 0.0010 18 6 2.5667 -10.2460 0.0063 19 6 2.7376 -11.6153 0.0015 20 7 3.9456 -12.1460 0.0026 21 6 5.0342 -11.4007 0.0032 22 6 4.9484 -10.0233 0.0021 23 6 2.4002 -7.3482 0.0006 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8896 27 1 3.1569 -3.4353 -0.0002 28 1 4.6918 -4.9846 0.0002 29 1 1.5750 -9.8180 0.0104 30 1 1.8717 -12.2608 0.0015 31 1 6.0047 -11.8744 0.0036 32 1 5.8434 -9.4190 0.0021 33 1 1.4079 -7.7746 0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556403554.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:08 Heat of formation + Delta-G solvation = 78.592135 kcal Electronic energy + Delta-G solvation = -18940.665989 eV Core-core repulsion = 15775.256934 eV Total energy + Delta-G solvation = -3165.409055 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.92905 -40.23297 -38.41575 -34.66815 -34.21963 -32.35467 -31.88797 -30.63860 -30.23716 -27.33382 -24.72564 -24.19132 -23.00440 -21.69285 -21.14013 -19.74272 -18.81309 -17.13557 -16.45635 -16.20508 -15.85936 -15.78740 -15.17453 -15.04630 -14.46652 -14.35032 -14.30511 -14.13391 -13.85589 -12.95158 -12.89890 -12.21667 -11.97598 -11.87867 -11.26289 -11.17221 -10.99636 -10.88487 -10.33266 -10.03607 -9.68265 -9.52249 -9.43476 -9.25160 -8.76840 -8.66969 -7.89546 -6.18174 -4.25304 0.30146 0.64982 1.77536 1.89237 2.14301 3.24672 3.29665 3.30871 3.39750 3.83670 3.91847 4.02162 4.19438 4.29505 4.38603 4.56635 4.59383 4.74515 4.98755 5.12462 5.18121 5.22139 5.32825 5.34404 5.64849 5.78568 6.08746 6.22716 6.66406 7.23095 7.29483 7.38228 7.49474 7.51837 7.64213 7.94828 8.58276 8.74995 9.04302 9.41223 10.92010 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.053357 B = 0.003027 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.643011 B = 9247.068614 C = 9756.567205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.703 5.703 11 C 0.574 3.426 12 O -0.559 6.559 13 C -0.256 4.256 14 C 0.098 3.902 15 N -0.293 5.293 16 N -0.325 5.325 17 C 0.210 3.790 18 C -0.198 4.198 19 C 0.128 3.872 20 N -0.496 5.496 21 C 0.123 3.877 22 C -0.175 4.175 23 C 0.117 3.883 24 H 0.267 0.733 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.390 0.610 28 H 0.201 0.799 29 H 0.146 0.854 30 H 0.167 0.833 31 H 0.165 0.835 32 H 0.150 0.850 33 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.282 -19.792 0.008 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.350 5.350 11 C 0.359 3.641 12 O -0.440 6.440 13 C -0.270 4.270 14 C -0.091 4.091 15 N -0.109 5.109 16 N -0.099 5.099 17 C 0.109 3.891 18 C -0.220 4.220 19 C -0.029 4.029 20 N -0.206 5.206 21 C -0.033 4.033 22 C -0.197 4.197 23 C -0.028 4.028 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.223 0.777 28 H 0.218 0.782 29 H 0.164 0.836 30 H 0.184 0.816 31 H 0.183 0.817 32 H 0.168 0.832 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 9.394 -21.424 0.007 23.393 hybrid contribution 0.040 2.607 0.002 2.607 sum 9.434 -18.817 0.009 21.049 Atomic orbital electron populations 1.69958 1.06114 1.27467 1.48734 1.24943 0.94912 0.99442 0.94658 0.86472 0.79420 0.82292 0.78709 1.20041 1.21080 1.20049 1.21178 0.93263 0.90402 1.53450 0.91874 1.19140 0.88219 0.81679 0.97929 1.46276 1.11168 1.05687 1.71912 1.17175 0.86946 0.82404 0.77601 1.90746 1.15993 1.84951 1.52264 1.20794 0.94088 0.93848 1.18286 1.24407 0.93346 0.96223 0.95170 1.77221 1.10111 0.98320 1.25273 1.45558 1.05063 1.03865 1.55411 1.17835 0.95379 0.79030 0.96871 1.21978 0.98577 0.95112 1.06364 1.22677 0.95472 0.91548 0.93167 1.67718 0.98816 1.40889 1.13132 1.22747 0.97792 0.89464 0.93333 1.21959 0.97080 0.96674 1.03967 1.23046 0.91780 0.91598 0.96349 0.92354 0.95313 0.95328 0.77726 0.78214 0.83637 0.81587 0.81746 0.83180 0.79028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.54 29.54 -169.99 -5.02 15.51 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -14.46 9.28 -34.44 -0.32 -14.78 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.25 6.50 5.43 -5.20 -0.03 6.48 16 10 N -0.70 -14.46 5.54 -62.57 -0.35 -14.81 16 11 C 0.57 11.43 7.81 -12.52 -0.10 11.33 16 12 O -0.56 -13.19 16.90 5.27 0.09 -13.10 16 13 C -0.26 -3.96 6.13 -105.05 -0.64 -4.61 16 14 C 0.10 1.28 11.50 -16.95 -0.19 1.09 16 15 N -0.29 -3.91 11.87 30.88 0.37 -3.55 16 16 N -0.33 -4.12 3.76 -10.03 -0.04 -4.15 16 17 C 0.21 2.25 6.73 -83.36 -0.56 1.69 16 18 C -0.20 -1.70 9.52 -39.26 -0.37 -2.07 16 19 C 0.13 1.02 11.17 -17.59 -0.20 0.82 16 20 N -0.50 -4.63 10.36 -13.33 -0.14 -4.76 16 21 C 0.12 1.01 11.17 -17.59 -0.20 0.81 16 22 C -0.17 -1.64 9.73 -39.26 -0.38 -2.02 16 23 C 0.12 1.56 10.64 -16.42 -0.17 1.39 16 24 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.39 6.72 7.27 -40.82 -0.30 6.42 16 28 H 0.20 2.00 7.50 -52.49 -0.39 1.60 16 29 H 0.15 0.98 6.85 -52.48 -0.36 0.62 16 30 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 31 H 0.17 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.15 1.34 7.78 -52.49 -0.41 0.94 16 33 H 0.19 2.11 7.09 -52.49 -0.37 1.74 16 LS Contribution 301.94 15.07 4.55 4.55 Total: -1.00 -33.86 301.94 -6.12 -39.98 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -3.06 Total: 3.55 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -3.27 Total: 1.78 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: 0.58 Total: -52.28 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.09 Total: -13.10 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.86 -6.12 -39.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556403554.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.575 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds