Wall clock time and date at job start Mon Mar 30 2020 00:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99886 * 2 1 4 4 H 1.48499 * 109.47372 * 240.00538 * 3 2 1 5 5 H 1.48507 * 109.46953 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47454 * 120.00023 * 3 2 1 7 7 C 1.37877 * 120.00464 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00380 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99932 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47303 * 180.02562 * 9 7 2 11 11 C 1.34782 * 120.00062 * 179.97438 * 10 9 7 12 12 O 1.21606 * 120.00124 * 0.02562 * 11 10 9 13 13 C 1.47419 * 119.99745 * 180.02562 * 11 10 9 14 14 C 1.41361 * 126.41026 * 359.97438 * 13 11 10 15 15 N 1.30454 * 108.07755 * 180.02562 * 14 13 11 16 16 N 1.39940 * 108.91421 * 0.02562 * 15 14 13 17 17 C 1.39914 * 125.77105 * 180.02562 * 16 15 14 18 18 C 1.39328 * 120.85196 * 179.74042 * 17 16 15 19 19 C 1.38000 * 119.08046 * 179.74752 * 18 17 16 20 20 N 1.31940 * 120.83229 * 0.53657 * 19 18 17 21 21 C 1.31935 * 121.88292 * 359.73803 * 20 19 18 22 22 C 1.38000 * 120.83444 * 359.97431 * 21 20 19 23 23 C 1.34600 * 108.44665 * 359.97438 * 16 15 14 24 24 H 0.96998 * 120.00392 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47240 * 59.99960 * 9 7 2 26 26 H 1.09005 * 109.47305 * 300.00741 * 9 7 2 27 27 H 0.97003 * 120.00246 * 0.02562 * 10 9 7 28 28 H 1.08001 * 125.96554 * 0.05695 * 14 13 11 29 29 H 1.08007 * 120.45900 * 359.97438 * 18 17 16 30 30 H 1.08001 * 119.58498 * 180.24822 * 19 18 17 31 31 H 1.08002 * 119.58134 * 180.02562 * 21 20 19 32 32 H 1.07997 * 120.46257 * 180.02562 * 22 21 20 33 33 H 1.08000 * 126.31054 * 180.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7540 -4.8833 0.0000 12 8 0.5584 -5.1056 0.0000 13 6 2.7121 -6.0037 0.0006 14 6 4.1221 -5.9021 0.0001 15 7 4.6150 -7.1099 0.0003 16 7 3.5607 -8.0301 0.0003 17 6 3.6910 -9.4232 0.0010 18 6 2.5667 -10.2460 0.0063 19 6 2.7376 -11.6153 0.0015 20 7 3.9456 -12.1460 0.0026 21 6 5.0342 -11.4007 0.0032 22 6 4.9484 -10.0233 0.0021 23 6 2.4002 -7.3482 0.0006 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8896 27 1 3.1569 -3.4353 -0.0002 28 1 4.6918 -4.9846 0.0002 29 1 1.5750 -9.8180 0.0104 30 1 1.8717 -12.2608 0.0015 31 1 6.0047 -11.8744 0.0036 32 1 5.8434 -9.4190 0.0021 33 1 1.4079 -7.7746 0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556403554.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:08 Heat of formation + Delta-G solvation = 54.322680 kcal Electronic energy + Delta-G solvation = -18941.718392 eV Core-core repulsion = 15775.256934 eV Total energy + Delta-G solvation = -3166.461458 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.93089 -41.00845 -40.02568 -36.14472 -35.53551 -34.30368 -32.59861 -31.59196 -31.33764 -29.20434 -25.93931 -24.95215 -24.49478 -23.07186 -22.09441 -21.14552 -20.00531 -18.63317 -17.52219 -17.17154 -17.05232 -16.82933 -16.73040 -16.32466 -15.87469 -15.85071 -15.32455 -14.76870 -14.76576 -14.60146 -14.05113 -13.88866 -13.88145 -12.98328 -12.88919 -12.66491 -12.31156 -12.16985 -12.09373 -11.48320 -10.94879 -10.77022 -10.68458 -10.53492 -10.31184 -9.92964 -9.56528 -8.26420 -6.42521 -0.54930 0.01650 0.72456 0.95628 1.08120 1.45845 1.49562 1.57482 2.33804 2.41849 2.58074 2.73356 3.08894 3.18080 3.44843 3.49080 3.72771 3.82615 3.96248 4.02485 4.15893 4.41147 4.51727 4.66877 4.76920 4.88036 5.14257 5.24723 5.27903 5.43635 5.49727 5.70425 5.76335 5.86967 6.23235 6.67533 6.87521 6.91073 7.25571 7.46492 8.85604 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.053357 B = 0.003027 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.643011 B = 9247.068614 C = 9756.567205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.556 4.556 8 H 0.086 0.914 9 C 0.268 3.732 10 N -0.698 5.698 11 C 0.577 3.423 12 O -0.604 6.604 13 C -0.285 4.285 14 C 0.106 3.894 15 N -0.302 5.302 16 N -0.320 5.320 17 C 0.178 3.822 18 C -0.194 4.194 19 C 0.129 3.871 20 N -0.511 5.511 21 C 0.125 3.875 22 C -0.178 4.178 23 C 0.132 3.868 24 H 0.269 0.731 25 H -0.009 1.009 26 H -0.009 1.009 27 H 0.408 0.592 28 H 0.228 0.772 29 H 0.163 0.837 30 H 0.197 0.803 31 H 0.193 0.807 32 H 0.152 0.848 33 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.404 -20.770 0.009 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.806 3.194 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.594 4.594 8 H 0.104 0.896 9 C 0.145 3.855 10 N -0.347 5.347 11 C 0.365 3.635 12 O -0.487 6.487 13 C -0.299 4.299 14 C -0.083 4.083 15 N -0.119 5.119 16 N -0.092 5.092 17 C 0.078 3.922 18 C -0.217 4.217 19 C -0.028 4.028 20 N -0.221 5.221 21 C -0.031 4.031 22 C -0.200 4.200 23 C -0.015 4.015 24 H 0.077 0.923 25 H 0.009 0.991 26 H 0.009 0.991 27 H 0.244 0.756 28 H 0.244 0.756 29 H 0.180 0.820 30 H 0.213 0.787 31 H 0.210 0.790 32 H 0.169 0.831 33 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 11.590 -22.460 0.009 25.274 hybrid contribution -0.636 2.678 0.001 2.752 sum 10.954 -19.782 0.010 22.612 Atomic orbital electron populations 1.70124 1.08236 1.28601 1.49987 1.26033 0.95745 1.03803 0.93916 0.85232 0.77922 0.76724 0.79499 1.18658 1.21263 1.18669 1.21595 0.94418 0.90478 1.52873 0.89614 1.18582 0.88583 0.83904 0.94426 1.45945 1.11299 1.04993 1.72461 1.17686 0.87072 0.82915 0.75812 1.90711 1.18269 1.85598 1.54150 1.20309 0.94309 0.93011 1.22289 1.24761 0.92270 0.97173 0.94084 1.77207 1.10605 0.98363 1.25723 1.45682 1.04547 1.04660 1.54340 1.18235 0.96793 0.78166 0.99037 1.22246 0.98814 0.95286 1.05329 1.23194 0.96051 0.91645 0.91907 1.67796 0.99548 1.41441 1.13326 1.23183 0.98782 0.88973 0.92195 1.22087 0.96740 0.97277 1.03849 1.23321 0.92841 0.91123 0.94173 0.92268 0.99089 0.99104 0.75577 0.75620 0.81972 0.78662 0.79025 0.83052 0.77145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.59 13.29 21.45 0.28 -55.30 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.98 41.72 29.54 68.60 2.03 43.74 16 4 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 7 C -0.56 -29.67 9.28 25.60 0.24 -29.43 16 8 H 0.09 4.08 7.60 -2.91 -0.02 4.06 16 9 C 0.27 14.48 5.43 85.63 0.46 14.94 16 10 N -0.70 -29.25 5.54 -470.12 -2.60 -31.86 16 11 C 0.58 23.50 7.81 86.66 0.68 24.17 16 12 O -0.60 -29.65 16.90 -4.05 -0.07 -29.72 16 13 C -0.29 -8.67 6.13 -20.14 -0.12 -8.79 16 14 C 0.11 2.63 11.50 85.67 0.99 3.62 16 15 N -0.30 -7.62 11.87 -56.22 -0.67 -8.29 16 16 N -0.32 -7.62 3.76 -185.66 -0.70 -8.32 16 17 C 0.18 3.50 6.73 38.37 0.26 3.76 16 18 C -0.19 -2.92 9.52 22.48 0.21 -2.70 16 19 C 0.13 1.70 11.17 84.62 0.95 2.65 16 20 N -0.51 -8.30 10.36 -196.07 -2.03 -10.33 16 21 C 0.12 1.77 11.17 84.62 0.95 2.71 16 22 C -0.18 -3.03 9.73 22.47 0.22 -2.81 16 23 C 0.13 3.39 10.64 84.22 0.90 4.29 16 24 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 25 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 26 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 27 H 0.41 13.82 7.27 -92.71 -0.67 13.15 16 28 H 0.23 4.03 7.50 -2.91 -0.02 4.01 16 29 H 0.16 1.79 6.85 -2.91 -0.02 1.77 16 30 H 0.20 1.28 8.06 -2.91 -0.02 1.26 16 31 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 32 H 0.15 2.48 7.78 -2.91 -0.02 2.46 16 33 H 0.21 4.38 7.09 -2.91 -0.02 4.36 16 Total: -1.00 -75.31 301.94 2.91 -72.40 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.48 Total: 14.55 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 6.18 Total: 13.12 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -5.72 Total: -114.09 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.07 Total: -29.72 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -75.31 2.91 -72.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556403554.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.727 kcal (2) G-P(sol) polarization free energy of solvation -75.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds