Wall clock time and date at job start Mon Mar 30 2020 01:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30867 * 125.41804 * 2 1 4 4 C 1.33309 * 109.69177 * 179.74356 * 3 2 1 5 5 C 1.36695 * 107.78214 * 0.44545 * 4 3 2 6 6 C 1.46711 * 126.84616 * 179.83363 * 5 4 3 7 7 O 1.21680 * 120.00216 * 359.68130 * 6 5 4 8 8 N 1.34781 * 119.99663 * 179.68504 * 6 5 4 9 9 C 1.39150 * 119.99792 * 183.70210 * 8 6 5 10 10 C 1.39706 * 119.57718 * 338.97606 * 9 8 6 11 11 C 1.38637 * 119.49248 * 180.02562 * 10 9 8 12 12 C 1.38349 * 118.67519 * 359.97438 * 11 10 9 13 13 C 1.40574 * 119.13684 * 0.02562 * 12 11 10 14 14 C 1.41328 * 119.78997 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00330 * 5.11775 * 14 13 12 16 16 C 1.40026 * 119.99941 * 185.12515 * 14 13 12 17 17 N 1.30753 * 120.00028 * 184.81789 * 16 14 13 18 18 Si 1.86796 * 120.00305 * 4.82044 * 16 14 13 19 19 H 1.48500 * 109.47515 * 179.97438 * 18 16 14 20 20 H 1.48490 * 109.47023 * 300.00138 * 18 16 14 21 21 H 1.48501 * 109.46918 * 59.99908 * 18 16 14 22 22 N 1.31923 * 119.57539 * 159.22825 * 9 8 6 23 23 N 1.34499 * 125.41702 * 180.02562 * 2 1 3 24 24 H 0.96997 * 126.47556 * 359.97438 * 23 2 1 25 25 H 1.09005 * 109.47048 * 269.97354 * 1 2 3 26 26 H 1.08999 * 109.47253 * 29.97405 * 1 2 3 27 27 H 1.08998 * 109.47640 * 149.97314 * 1 2 3 28 28 H 1.07998 * 126.10808 * 180.28950 * 4 3 2 29 29 H 0.97001 * 119.99901 * 3.70035 * 8 6 5 30 30 H 1.08004 * 120.25360 * 359.97138 * 10 9 8 31 31 H 1.08006 * 120.66492 * 179.97438 * 11 10 9 32 32 H 1.08004 * 120.43661 * 180.02562 * 12 11 10 33 33 H 0.97002 * 119.99681 * 354.99315 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2653 1.0665 0.0000 4 6 3.5485 0.7052 0.0056 5 6 3.5976 -0.6609 -0.0008 6 6 4.8025 -1.4979 -0.0013 7 8 5.9034 -0.9797 -0.0016 8 7 4.6899 -2.8411 -0.0017 9 6 5.8302 -3.6348 0.0756 10 6 7.0691 -3.0989 -0.2844 11 6 8.2040 -3.8915 -0.2073 12 6 8.0728 -5.1982 0.2277 13 6 6.7985 -5.6791 0.5757 14 6 6.6485 -7.0119 1.0213 15 1 7.5197 -7.6320 1.1727 16 6 5.3704 -7.5286 1.2664 17 7 5.2353 -8.7285 1.7678 18 14 3.8581 -6.5035 0.8769 19 1 2.6360 -7.2722 1.2246 20 1 3.8948 -5.2471 1.6674 21 1 3.8413 -6.1767 -0.5716 22 7 5.7267 -4.8853 0.4831 23 7 2.2864 -1.0961 -0.0005 24 1 1.9849 -2.0180 -0.0006 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5142 28 1 4.3976 1.3725 0.0114 29 1 3.8140 -3.2543 -0.0558 30 1 7.1421 -2.0753 -0.6211 31 1 9.1712 -3.4967 -0.4813 32 1 8.9381 -5.8406 0.2991 33 1 6.0158 -9.2886 1.9023 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001558101038.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:14 Heat of formation + Delta-G solvation = 49.661174 kcal Electronic energy + Delta-G solvation = -19868.849613 eV Core-core repulsion = 16702.186017 eV Total energy + Delta-G solvation = -3166.663596 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.40971 -40.02703 -38.12372 -34.82466 -33.68059 -32.82769 -32.12769 -31.20139 -29.70849 -27.60933 -25.45464 -23.79854 -22.02051 -21.66873 -20.78502 -20.19797 -18.94049 -18.19266 -16.98113 -16.13204 -15.91758 -15.24156 -14.92685 -14.68248 -14.31600 -14.07662 -13.69984 -13.54692 -13.11312 -12.99201 -12.77438 -12.74136 -12.33252 -11.98257 -11.35978 -10.96497 -10.50043 -10.40656 -10.38223 -10.15531 -9.77851 -9.43411 -9.27549 -8.69912 -8.64414 -7.86312 -7.58898 -7.31559 -4.86445 1.09191 2.30732 2.55125 2.62157 2.72370 3.06497 3.35750 3.39137 3.53143 3.84886 4.10530 4.27848 4.53013 4.59895 4.81621 5.06430 5.15424 5.31339 5.42582 5.54279 5.60872 5.77585 5.92023 6.34113 6.36902 6.43954 6.46734 6.94284 7.01123 7.07800 7.34634 7.43009 7.51629 7.64943 7.71565 8.01610 8.14037 8.28653 8.55414 9.28690 9.91072 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.021386 B = 0.005706 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.981792 B = 4905.992257 C = 6156.932337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.239 3.761 3 N -0.497 5.497 4 C 0.075 3.925 5 C -0.085 4.085 6 C 0.597 3.403 7 O -0.497 6.497 8 N -0.651 5.651 9 C 0.383 3.617 10 C -0.310 4.310 11 C -0.035 4.035 12 C -0.273 4.273 13 C 0.273 3.727 14 C -0.475 4.475 15 H 0.085 0.915 16 C 0.043 3.957 17 N -0.804 5.804 18 Si 1.153 2.847 19 H -0.331 1.331 20 H -0.282 1.282 21 H -0.295 1.295 22 N -0.599 5.599 23 N -0.552 5.552 24 H 0.423 0.577 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.186 0.814 29 H 0.400 0.600 30 H 0.146 0.854 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.016 11.905 -3.686 15.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.025 4.025 3 N -0.217 5.217 4 C -0.079 4.079 5 C -0.201 4.201 6 C 0.384 3.616 7 O -0.371 6.371 8 N -0.295 5.295 9 C 0.153 3.847 10 C -0.335 4.335 11 C -0.059 4.059 12 C -0.295 4.295 13 C 0.149 3.851 14 C -0.507 4.507 15 H 0.103 0.897 16 C -0.179 4.179 17 N -0.426 5.426 18 Si 0.989 3.011 19 H -0.265 1.265 20 H -0.210 1.210 21 H -0.223 1.223 22 N -0.325 5.325 23 N -0.158 5.158 24 H 0.262 0.738 25 H 0.105 0.895 26 H 0.114 0.886 27 H 0.097 0.903 28 H 0.203 0.797 29 H 0.234 0.766 30 H 0.164 0.836 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.803 12.669 -3.310 16.976 hybrid contribution 2.498 -1.533 -0.209 2.938 sum -8.306 11.136 -3.519 14.331 Atomic orbital electron populations 1.20323 0.84148 1.04619 1.04192 1.23486 0.95928 0.81499 1.01586 1.70211 1.02084 1.28140 1.21251 1.22663 0.94793 0.90999 0.99430 1.21121 0.83402 0.96005 1.19592 1.16753 0.87250 0.80791 0.76832 1.90750 1.24942 1.72900 1.48510 1.43087 1.09335 1.05633 1.71455 1.18039 0.84880 0.88532 0.93298 1.21733 0.91289 1.03305 1.17155 1.20969 0.97078 0.93250 0.94596 1.21639 0.97901 0.96635 1.13347 1.18262 0.86461 0.92178 0.88234 1.20740 0.96194 0.95453 1.38349 0.89731 1.27747 1.04245 0.96676 0.89185 1.70640 1.36190 1.08395 1.27379 0.81873 0.69747 0.72320 0.77135 1.26504 1.20962 1.22347 1.65964 1.33179 1.04960 1.28380 1.43315 1.06150 1.10460 1.55883 0.73802 0.89468 0.88625 0.90259 0.79652 0.76605 0.83647 0.87358 0.87532 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.51 36.00 0.38 -0.06 16 2 C 0.24 2.47 8.12 -155.61 -1.26 1.21 16 3 N -0.50 -6.45 11.20 -10.58 -0.12 -6.57 16 4 C 0.07 1.01 11.66 -17.47 -0.20 0.81 16 5 C -0.09 -1.18 7.07 -82.15 -0.58 -1.77 16 6 C 0.60 10.21 7.68 -12.84 -0.10 10.11 16 7 O -0.50 -9.73 13.56 5.21 0.07 -9.66 16 8 N -0.65 -11.92 5.40 -12.58 -0.07 -11.99 16 9 C 0.38 8.65 7.51 -155.06 -1.16 7.48 16 10 C -0.31 -6.88 8.89 -38.89 -0.35 -7.23 16 11 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 12 C -0.27 -6.40 9.83 -38.66 -0.38 -6.78 16 13 C 0.27 7.05 6.40 -85.00 -0.54 6.51 16 14 C -0.48 -12.76 9.57 -37.74 -0.36 -13.12 16 15 H 0.08 2.26 8.05 -52.49 -0.42 1.84 16 16 C 0.04 1.14 5.52 -17.34 -0.10 1.04 16 17 N -0.80 -21.50 13.65 55.55 0.76 -20.75 16 18 Si 1.15 26.87 25.61 -169.99 -4.35 22.51 16 19 H -0.33 -7.61 7.11 56.52 0.40 -7.21 16 20 H -0.28 -6.44 6.61 56.52 0.37 -6.06 16 21 H -0.30 -6.74 7.11 56.52 0.40 -6.34 16 22 N -0.60 -14.89 4.54 -10.27 -0.05 -14.93 16 23 N -0.55 -5.89 6.07 -7.02 -0.04 -5.93 16 24 H 0.42 3.37 8.32 -40.82 -0.34 3.03 16 25 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.19 2.25 8.06 -52.49 -0.42 1.82 16 29 H 0.40 6.26 8.07 -40.82 -0.33 5.93 16 30 H 0.15 3.14 5.17 -52.92 -0.27 2.87 16 31 H 0.11 1.97 8.06 -52.48 -0.42 1.55 16 32 H 0.11 2.32 8.06 -52.48 -0.42 1.90 16 33 H 0.28 7.27 8.72 -40.82 -0.36 6.92 16 LS Contribution 290.70 15.07 4.38 4.38 Total: -1.00 -32.08 290.70 -7.56 -39.64 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -3.08 Total: 6.22 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -5.06 Total: -2.93 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 0.48 Total: -60.17 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.07 Total: -9.66 kcal Atomic # 14 Polarization: 26.87 SS G_CDS: -4.35 Total: 22.51 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.08 -7.56 -39.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558101038.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.297 kcal (2) G-P(sol) polarization free energy of solvation -32.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds