Wall clock time and date at job start Mon Mar 30 2020 01:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30867 * 125.41804 * 2 1 4 4 C 1.33309 * 109.69177 * 179.74356 * 3 2 1 5 5 C 1.36695 * 107.78214 * 0.44545 * 4 3 2 6 6 C 1.46711 * 126.84616 * 179.83363 * 5 4 3 7 7 O 1.21680 * 120.00216 * 359.68130 * 6 5 4 8 8 N 1.34781 * 119.99663 * 179.68504 * 6 5 4 9 9 C 1.39150 * 119.99792 * 183.70210 * 8 6 5 10 10 C 1.39706 * 119.57718 * 338.97606 * 9 8 6 11 11 C 1.38637 * 119.49248 * 180.02562 * 10 9 8 12 12 C 1.38349 * 118.67519 * 359.97438 * 11 10 9 13 13 C 1.40574 * 119.13684 * 0.02562 * 12 11 10 14 14 C 1.41328 * 119.78997 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00330 * 5.11775 * 14 13 12 16 16 C 1.40026 * 119.99941 * 185.12515 * 14 13 12 17 17 N 1.30753 * 120.00028 * 184.81789 * 16 14 13 18 18 Si 1.86796 * 120.00305 * 4.82044 * 16 14 13 19 19 H 1.48500 * 109.47515 * 179.97438 * 18 16 14 20 20 H 1.48490 * 109.47023 * 300.00138 * 18 16 14 21 21 H 1.48501 * 109.46918 * 59.99908 * 18 16 14 22 22 N 1.31923 * 119.57539 * 159.22825 * 9 8 6 23 23 N 1.34499 * 125.41702 * 180.02562 * 2 1 3 24 24 H 0.96997 * 126.47556 * 359.97438 * 23 2 1 25 25 H 1.09005 * 109.47048 * 269.97354 * 1 2 3 26 26 H 1.08999 * 109.47253 * 29.97405 * 1 2 3 27 27 H 1.08998 * 109.47640 * 149.97314 * 1 2 3 28 28 H 1.07998 * 126.10808 * 180.28950 * 4 3 2 29 29 H 0.97001 * 119.99901 * 3.70035 * 8 6 5 30 30 H 1.08004 * 120.25360 * 359.97138 * 10 9 8 31 31 H 1.08006 * 120.66492 * 179.97438 * 11 10 9 32 32 H 1.08004 * 120.43661 * 180.02562 * 12 11 10 33 33 H 0.97002 * 119.99681 * 354.99315 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2653 1.0665 0.0000 4 6 3.5485 0.7052 0.0056 5 6 3.5976 -0.6609 -0.0008 6 6 4.8025 -1.4979 -0.0013 7 8 5.9034 -0.9797 -0.0016 8 7 4.6899 -2.8411 -0.0017 9 6 5.8302 -3.6348 0.0756 10 6 7.0691 -3.0989 -0.2844 11 6 8.2040 -3.8915 -0.2073 12 6 8.0728 -5.1982 0.2277 13 6 6.7985 -5.6791 0.5757 14 6 6.6485 -7.0119 1.0213 15 1 7.5197 -7.6320 1.1727 16 6 5.3704 -7.5286 1.2664 17 7 5.2353 -8.7285 1.7678 18 14 3.8581 -6.5035 0.8769 19 1 2.6360 -7.2722 1.2246 20 1 3.8948 -5.2471 1.6674 21 1 3.8413 -6.1767 -0.5716 22 7 5.7267 -4.8853 0.4831 23 7 2.2864 -1.0961 -0.0005 24 1 1.9849 -2.0180 -0.0006 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5142 28 1 4.3976 1.3725 0.0114 29 1 3.8140 -3.2543 -0.0558 30 1 7.1421 -2.0753 -0.6211 31 1 9.1712 -3.4967 -0.4813 32 1 8.9381 -5.8406 0.2991 33 1 6.0158 -9.2886 1.9023 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001558101038.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:13 Heat of formation + Delta-G solvation = 28.347574 kcal Electronic energy + Delta-G solvation = -19869.773840 eV Core-core repulsion = 16702.186017 eV Total energy + Delta-G solvation = -3167.587823 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.37134 -41.56796 -39.80361 -36.43325 -35.49783 -33.83079 -33.04582 -32.94416 -31.37147 -28.57363 -27.27942 -25.13393 -23.72451 -23.01439 -21.84305 -21.53481 -20.53213 -19.75224 -18.50331 -17.42246 -17.05415 -16.97642 -16.43858 -15.97053 -15.79452 -15.54159 -14.99053 -14.79581 -14.68701 -14.31852 -14.27342 -13.77689 -13.45984 -13.22556 -13.02352 -12.80007 -12.26422 -11.84231 -11.70336 -11.44045 -11.30656 -11.19631 -10.93211 -10.46386 -9.75921 -9.71919 -9.39002 -9.22776 -6.86136 -0.04477 0.63925 0.72368 1.47736 1.55797 1.64544 1.71654 1.83736 2.03158 2.12914 2.42478 2.63039 3.30645 3.49068 3.60334 3.95173 4.04600 4.24955 4.32923 4.48222 4.59740 4.66044 4.74472 4.77487 4.84990 5.13081 5.27320 5.33736 5.36350 5.41016 5.68995 5.74153 5.85996 6.12857 6.22937 6.34913 6.59776 6.78543 6.81984 7.41350 7.91240 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.021386 B = 0.005706 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.981792 B = 4905.992257 C = 6156.932337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.259 3.741 3 N -0.525 5.525 4 C 0.078 3.922 5 C -0.107 4.107 6 C 0.603 3.397 7 O -0.525 6.525 8 N -0.648 5.648 9 C 0.372 3.628 10 C -0.308 4.308 11 C -0.027 4.027 12 C -0.289 4.289 13 C 0.257 3.743 14 C -0.508 4.508 15 H 0.069 0.931 16 C 0.012 3.988 17 N -0.828 5.828 18 Si 1.186 2.814 19 H -0.326 1.326 20 H -0.276 1.276 21 H -0.290 1.290 22 N -0.610 5.610 23 N -0.545 5.545 24 H 0.436 0.564 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.191 0.809 29 H 0.412 0.588 30 H 0.156 0.844 31 H 0.147 0.853 32 H 0.116 0.884 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.729 13.978 -4.370 18.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.005 4.005 3 N -0.246 5.246 4 C -0.076 4.076 5 C -0.222 4.222 6 C 0.392 3.608 7 O -0.401 6.401 8 N -0.293 5.293 9 C 0.142 3.858 10 C -0.332 4.332 11 C -0.051 4.051 12 C -0.311 4.311 13 C 0.132 3.868 14 C -0.541 4.541 15 H 0.087 0.913 16 C -0.204 4.204 17 N -0.451 5.451 18 Si 1.017 2.983 19 H -0.260 1.260 20 H -0.204 1.204 21 H -0.218 1.218 22 N -0.336 5.336 23 N -0.152 5.152 24 H 0.277 0.723 25 H 0.122 0.878 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.208 0.792 29 H 0.249 0.751 30 H 0.173 0.827 31 H 0.164 0.836 32 H 0.134 0.866 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.540 14.733 -3.998 19.756 hybrid contribution 3.027 -1.931 -0.055 3.591 sum -9.513 12.802 -4.053 16.457 Atomic orbital electron populations 1.20605 0.80677 1.06331 1.05734 1.24390 0.97547 0.80617 0.97985 1.70279 1.01960 1.29395 1.22922 1.22894 0.95528 0.91022 0.98200 1.20570 0.83602 0.95504 1.22562 1.17075 0.87982 0.80212 0.75488 1.90707 1.26433 1.73176 1.49829 1.43066 1.08819 1.05836 1.71596 1.18371 0.86608 0.88226 0.92614 1.22099 0.91502 1.03758 1.15829 1.21381 0.98691 0.92209 0.92783 1.21810 0.97464 0.97851 1.13944 1.18440 0.87856 0.92107 0.88353 1.20742 0.96027 0.96378 1.40937 0.91310 1.28636 1.05999 0.97061 0.88720 1.70670 1.36050 1.08976 1.29402 0.81492 0.67953 0.71572 0.77235 1.25969 1.20413 1.21772 1.65973 1.33100 1.05831 1.28671 1.43275 1.04946 1.11425 1.55510 0.72256 0.87822 0.87831 0.87650 0.79165 0.75148 0.82670 0.83577 0.86570 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.51 71.23 0.75 0.18 16 2 C 0.26 4.53 8.12 138.19 1.12 5.65 16 3 N -0.52 -12.39 11.20 -187.38 -2.10 -14.49 16 4 C 0.08 1.98 11.66 84.11 0.98 2.96 16 5 C -0.11 -2.75 7.07 40.00 0.28 -2.47 16 6 C 0.60 19.65 7.68 86.46 0.66 20.31 16 7 O -0.53 -19.85 13.56 -4.28 -0.06 -19.91 16 8 N -0.65 -22.57 5.40 -311.94 -1.69 -24.25 16 9 C 0.37 16.28 7.51 133.29 1.00 17.28 16 10 C -0.31 -13.06 8.89 22.72 0.20 -12.86 16 11 C -0.03 -1.09 10.15 22.39 0.23 -0.86 16 12 C -0.29 -13.34 9.83 22.87 0.22 -13.11 16 13 C 0.26 13.35 6.40 40.19 0.26 13.61 16 14 C -0.51 -28.00 9.57 23.46 0.22 -27.77 16 15 H 0.07 3.86 8.05 -2.91 -0.02 3.83 16 16 C 0.01 0.66 5.52 85.29 0.47 1.14 16 17 N -0.83 -45.34 13.65 21.84 0.30 -45.04 16 18 Si 1.19 54.03 25.61 68.60 1.76 55.79 16 19 H -0.33 -14.44 7.11 99.48 0.71 -13.73 16 20 H -0.28 -12.21 6.61 99.48 0.66 -11.55 16 21 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 22 N -0.61 -29.79 4.54 -186.41 -0.85 -30.64 16 23 N -0.54 -10.04 6.07 -176.13 -1.07 -11.11 16 24 H 0.44 5.56 8.32 -92.71 -0.77 4.79 16 25 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 26 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 28 H 0.19 4.40 8.06 -2.91 -0.02 4.37 16 29 H 0.41 12.03 8.07 -92.71 -0.75 11.28 16 30 H 0.16 6.38 5.17 -9.77 -0.05 6.33 16 31 H 0.15 4.81 8.06 -2.91 -0.02 4.79 16 32 H 0.12 5.03 8.06 -2.91 -0.02 5.01 16 33 H 0.28 14.94 8.72 -92.71 -0.81 14.13 16 Total: -1.00 -69.18 290.70 2.24 -66.94 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -0.46 Total: 18.65 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 6.40 Total: 4.06 kcal Atomic # 7 Polarization: -120.13 SS G_CDS: -5.40 Total: -125.54 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.06 Total: -19.91 kcal Atomic # 14 Polarization: 54.03 SS G_CDS: 1.76 Total: 55.79 kcal Total: -69.18 2.24 -66.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558101038.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.290 kcal (2) G-P(sol) polarization free energy of solvation -69.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds