Wall clock time and date at job start Mon Mar 30 2020 01:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34865 * 119.99587 * 2 1 4 4 C 1.46420 * 120.00116 * 7.06403 * 3 2 1 5 5 O 1.21735 * 120.00203 * 6.10238 * 4 3 2 6 6 N 1.34774 * 119.99715 * 186.10522 * 4 3 2 7 7 C 1.36625 * 119.99956 * 179.97438 * 6 4 3 8 8 H 1.07999 * 119.99938 * 358.20414 * 7 6 4 9 9 C 1.39193 * 120.00243 * 178.20071 * 7 6 4 10 10 N 1.31276 * 119.99652 * 32.07663 * 9 7 6 11 11 Si 1.86799 * 119.99945 * 212.07841 * 9 7 6 12 12 H 1.48501 * 109.47128 * 94.99959 * 11 9 7 13 13 H 1.48499 * 109.46821 * 214.99255 * 11 9 7 14 14 H 1.48493 * 109.47450 * 334.99601 * 11 9 7 15 15 C 1.46506 * 120.00121 * 0.02562 * 6 4 3 16 16 C 1.47191 * 109.47520 * 89.86249 * 15 6 4 17 17 N 5.19981 * 117.58324 * 321.98501 * 2 1 3 18 18 C 1.47263 * 120.00064 * 179.97438 * 2 1 3 19 19 C 1.39884 * 120.14091 * 359.97438 * 18 2 1 20 20 N 1.31956 * 119.82698 * 179.72249 * 19 18 2 21 21 C 1.32224 * 120.11305 * 0.02562 * 20 19 18 22 22 C 1.38629 * 120.28358 * 359.97438 * 21 20 19 23 23 N 1.31864 * 120.17618 * 359.97438 * 22 21 20 24 24 H 1.08999 * 109.46843 * 175.20572 * 1 2 3 25 25 H 1.08997 * 109.47443 * 295.20617 * 1 2 3 26 26 H 1.08998 * 109.47320 * 55.21194 * 1 2 3 27 27 H 1.08000 * 119.99711 * 187.06262 * 3 2 1 28 28 H 0.97003 * 119.99765 * 180.02562 * 10 9 7 29 29 H 1.09001 * 109.46550 * 209.86360 * 15 6 4 30 30 H 1.09000 * 109.46879 * 329.85767 * 15 6 4 31 31 H 1.08004 * 120.08770 * 359.71009 * 19 18 2 32 32 H 1.08006 * 119.85488 * 180.02562 * 21 20 19 33 33 H 1.08001 * 119.91370 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1813 1.1680 0.0000 4 6 1.4575 2.4312 0.1559 5 8 0.2641 2.4233 0.3964 6 7 2.1124 3.6027 0.0331 7 6 1.4369 4.7814 0.1781 8 1 0.3728 4.7748 0.3623 9 6 2.1203 5.9908 0.0885 10 7 3.1625 6.0987 -0.7024 11 14 1.5542 7.4600 1.0936 12 1 2.3292 7.5224 2.3588 13 1 1.7747 8.7060 0.3163 14 1 0.1090 7.3199 1.4047 15 6 3.5484 3.6122 -0.2569 16 6 3.7546 3.6231 -1.7143 17 7 3.9148 3.6310 -2.8384 18 6 2.2434 -1.2753 0.0006 19 6 1.5470 -2.4885 0.0017 20 7 2.2130 -3.6276 -0.0034 21 6 3.5352 -3.6230 -0.0089 22 6 4.2301 -2.4234 -0.0100 23 7 3.5759 -1.2785 -0.0061 24 1 -0.3633 -1.0241 -0.0859 25 1 -0.3634 0.4376 0.9298 26 1 -0.3634 0.5863 -0.8440 27 1 3.2551 1.1716 -0.1150 28 1 3.6389 6.9413 -0.7645 29 1 4.0015 4.5017 0.1808 30 1 4.0110 2.7218 0.1689 31 1 0.4669 -2.4928 0.0068 32 1 4.0761 -4.5578 -0.0135 33 1 5.3101 -2.4266 -0.0150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584456423.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:52 Heat of formation + Delta-G solvation = 80.911111 kcal Electronic energy + Delta-G solvation = -19835.041751 eV Core-core repulsion = 16669.733254 eV Total energy + Delta-G solvation = -3165.308497 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.95819 -39.00278 -36.20465 -35.10910 -34.41872 -33.73415 -32.11772 -30.48467 -27.95115 -27.42712 -25.33087 -24.55964 -23.93424 -20.90902 -18.45544 -18.06549 -17.42682 -17.06974 -16.45220 -16.29307 -15.38680 -14.85226 -14.81847 -14.25481 -14.02808 -13.73438 -13.09935 -12.84649 -12.75575 -12.59130 -12.08513 -11.80677 -11.72260 -11.60723 -11.50902 -11.34455 -11.31390 -11.11029 -10.65034 -10.47204 -10.31771 -9.92479 -9.26521 -9.10014 -8.47271 -8.34994 -8.17614 -6.78927 -3.97293 0.39473 1.07539 2.13361 3.04603 3.15233 3.20013 3.53546 3.76664 3.87710 3.94680 4.00424 4.13815 4.23902 4.41931 4.64768 4.73965 4.91895 5.17238 5.20815 5.28629 5.36318 5.47561 5.70742 5.92269 6.05138 6.31010 6.36152 6.46554 6.55639 6.77417 6.88117 7.26687 7.29736 7.76512 7.78776 8.15208 8.61787 8.86626 9.04556 9.68464 10.25160 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.028142 B = 0.004750 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.700952 B = 5893.843652 C = 6489.726847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.070 4.070 3 C -0.122 4.122 4 C 0.455 3.545 5 O -0.577 6.577 6 N -0.420 5.420 7 C -0.309 4.309 8 H 0.120 0.880 9 C 0.037 3.963 10 N -0.849 5.849 11 Si 0.923 3.077 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.265 1.265 15 C 0.202 3.798 16 C 0.243 3.757 17 N -0.469 5.469 18 C 0.132 3.868 19 C 0.052 3.948 20 N -0.437 5.437 21 C 0.026 3.974 22 C 0.060 3.940 23 N -0.439 5.439 24 H 0.044 0.956 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.129 0.871 28 H 0.278 0.722 29 H 0.142 0.858 30 H 0.091 0.909 31 H 0.175 0.825 32 H 0.166 0.834 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.351 -11.880 4.377 13.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.075 4.075 3 C -0.145 4.145 4 C 0.249 3.751 5 O -0.463 6.463 6 N -0.137 5.137 7 C -0.436 4.436 8 H 0.137 0.863 9 C -0.170 4.170 10 N -0.485 5.485 11 Si 0.748 3.252 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.189 1.189 15 C 0.074 3.926 16 C -0.075 4.075 17 N -0.149 5.149 18 C -0.006 4.006 19 C -0.109 4.109 20 N -0.151 5.151 21 C -0.133 4.133 22 C -0.102 4.102 23 N -0.154 5.154 24 H 0.062 0.938 25 H 0.108 0.892 26 H 0.096 0.904 27 H 0.146 0.854 28 H 0.089 0.911 29 H 0.159 0.841 30 H 0.109 0.891 31 H 0.192 0.808 32 H 0.183 0.817 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.154 -11.690 2.765 12.419 hybrid contribution 0.180 0.869 0.632 1.090 sum 3.334 -10.820 3.397 11.821 Atomic orbital electron populations 1.20822 0.89420 0.99894 1.05066 1.20412 0.95720 0.89006 1.02323 1.23284 1.00448 0.92837 0.97974 1.17757 0.87369 0.83221 0.86790 1.90651 1.14452 1.86468 1.54749 1.43735 1.06111 1.06047 1.57842 1.19891 0.95852 0.81455 1.46417 0.86280 1.25372 0.96243 0.99528 0.95823 1.70044 1.20983 1.28008 1.29505 0.85959 0.79953 0.79370 0.79920 1.19831 1.20977 1.18883 1.19347 0.84901 1.04950 0.83360 1.29378 0.92392 0.90287 0.95449 1.80897 1.08896 1.11893 1.13215 1.20981 0.89977 0.94770 0.94823 1.23963 1.01981 0.87776 0.97144 1.68388 1.08867 1.29673 1.08161 1.23757 0.91156 0.99709 0.98693 1.23761 1.01836 0.88676 0.95896 1.68554 1.08114 1.29590 1.09173 0.93765 0.89169 0.90401 0.85370 0.91079 0.84084 0.89118 0.80848 0.81679 0.81406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.52 8.21 36.01 0.30 -1.22 16 2 C -0.07 -1.18 6.05 -102.15 -0.62 -1.80 16 3 C -0.12 -2.29 8.77 -37.49 -0.33 -2.61 16 4 C 0.46 10.19 7.48 -12.97 -0.10 10.10 16 5 O -0.58 -14.18 12.86 5.16 0.07 -14.12 16 6 N -0.42 -9.64 2.57 -119.53 -0.31 -9.94 16 7 C -0.31 -7.69 9.41 -15.06 -0.14 -7.83 16 8 H 0.12 3.15 7.32 -52.49 -0.38 2.76 16 9 C 0.04 0.87 4.88 -17.43 -0.09 0.78 16 10 N -0.85 -20.11 9.52 55.51 0.53 -19.58 16 11 Si 0.92 18.53 29.66 -169.99 -5.04 13.49 16 12 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 13 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 14 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 15 C 0.20 4.01 4.92 -6.83 -0.03 3.97 16 16 C 0.24 5.39 14.26 -20.78 -0.30 5.09 16 17 N -0.47 -11.18 18.53 42.13 0.78 -10.40 16 18 C 0.13 1.99 6.70 -82.97 -0.56 1.43 16 19 C 0.05 0.69 10.63 -16.88 -0.18 0.51 16 20 N -0.44 -5.61 10.49 -12.63 -0.13 -5.74 16 21 C 0.03 0.27 11.22 -17.24 -0.19 0.08 16 22 C 0.06 0.66 11.22 -17.39 -0.20 0.47 16 23 N -0.44 -6.43 9.52 -9.73 -0.09 -6.53 16 24 H 0.04 0.54 5.63 -51.93 -0.29 0.25 16 25 H 0.09 1.56 7.00 -51.93 -0.36 1.19 16 26 H 0.08 1.38 7.56 -51.93 -0.39 0.98 16 27 H 0.13 2.23 5.55 -52.49 -0.29 1.94 16 28 H 0.28 6.26 8.31 -40.82 -0.34 5.92 16 29 H 0.14 2.85 5.79 -51.93 -0.30 2.55 16 30 H 0.09 1.46 6.03 -51.93 -0.31 1.14 16 31 H 0.17 1.92 5.94 -52.48 -0.31 1.61 16 32 H 0.17 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.17 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 293.47 15.07 4.42 4.42 Total: -1.00 -30.06 293.47 -4.83 -34.89 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -2.63 Total: 4.53 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: -2.43 Total: 8.97 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.78 Total: -52.19 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.07 Total: -14.12 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.04 Total: 13.49 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.06 -4.83 -34.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584456423.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.805 kcal (2) G-P(sol) polarization free energy of solvation -30.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds