Wall clock time and date at job start Mon Mar 30 2020 01:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34865 * 119.99587 * 2 1 4 4 C 1.46420 * 120.00116 * 7.06403 * 3 2 1 5 5 O 1.21735 * 120.00203 * 6.10238 * 4 3 2 6 6 N 1.34774 * 119.99715 * 186.10522 * 4 3 2 7 7 C 1.36625 * 119.99956 * 179.97438 * 6 4 3 8 8 H 1.07999 * 119.99938 * 358.20414 * 7 6 4 9 9 C 1.39193 * 120.00243 * 178.20071 * 7 6 4 10 10 N 1.31276 * 119.99652 * 32.07663 * 9 7 6 11 11 Si 1.86799 * 119.99945 * 212.07841 * 9 7 6 12 12 H 1.48501 * 109.47128 * 94.99959 * 11 9 7 13 13 H 1.48499 * 109.46821 * 214.99255 * 11 9 7 14 14 H 1.48493 * 109.47450 * 334.99601 * 11 9 7 15 15 C 1.46506 * 120.00121 * 0.02562 * 6 4 3 16 16 C 1.47191 * 109.47520 * 89.86249 * 15 6 4 17 17 N 5.19981 * 117.58324 * 321.98501 * 2 1 3 18 18 C 1.47263 * 120.00064 * 179.97438 * 2 1 3 19 19 C 1.39884 * 120.14091 * 359.97438 * 18 2 1 20 20 N 1.31956 * 119.82698 * 179.72249 * 19 18 2 21 21 C 1.32224 * 120.11305 * 0.02562 * 20 19 18 22 22 C 1.38629 * 120.28358 * 359.97438 * 21 20 19 23 23 N 1.31864 * 120.17618 * 359.97438 * 22 21 20 24 24 H 1.08999 * 109.46843 * 175.20572 * 1 2 3 25 25 H 1.08997 * 109.47443 * 295.20617 * 1 2 3 26 26 H 1.08998 * 109.47320 * 55.21194 * 1 2 3 27 27 H 1.08000 * 119.99711 * 187.06262 * 3 2 1 28 28 H 0.97003 * 119.99765 * 180.02562 * 10 9 7 29 29 H 1.09001 * 109.46550 * 209.86360 * 15 6 4 30 30 H 1.09000 * 109.46879 * 329.85767 * 15 6 4 31 31 H 1.08004 * 120.08770 * 359.71009 * 19 18 2 32 32 H 1.08006 * 119.85488 * 180.02562 * 21 20 19 33 33 H 1.08001 * 119.91370 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1813 1.1680 0.0000 4 6 1.4575 2.4312 0.1559 5 8 0.2641 2.4233 0.3964 6 7 2.1124 3.6027 0.0331 7 6 1.4369 4.7814 0.1781 8 1 0.3728 4.7748 0.3623 9 6 2.1203 5.9908 0.0885 10 7 3.1625 6.0987 -0.7024 11 14 1.5542 7.4600 1.0936 12 1 2.3292 7.5224 2.3588 13 1 1.7747 8.7060 0.3163 14 1 0.1090 7.3199 1.4047 15 6 3.5484 3.6122 -0.2569 16 6 3.7546 3.6231 -1.7143 17 7 3.9148 3.6310 -2.8384 18 6 2.2434 -1.2753 0.0006 19 6 1.5470 -2.4885 0.0017 20 7 2.2130 -3.6276 -0.0034 21 6 3.5352 -3.6230 -0.0089 22 6 4.2301 -2.4234 -0.0100 23 7 3.5759 -1.2785 -0.0061 24 1 -0.3633 -1.0241 -0.0859 25 1 -0.3634 0.4376 0.9298 26 1 -0.3634 0.5863 -0.8440 27 1 3.2551 1.1716 -0.1150 28 1 3.6389 6.9413 -0.7645 29 1 4.0015 4.5017 0.1808 30 1 4.0110 2.7218 0.1689 31 1 0.4669 -2.4928 0.0068 32 1 4.0761 -4.5578 -0.0135 33 1 5.3101 -2.4266 -0.0150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584456423.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:52 Heat of formation + Delta-G solvation = 61.491926 kcal Electronic energy + Delta-G solvation = -19835.883830 eV Core-core repulsion = 16669.733254 eV Total energy + Delta-G solvation = -3166.150576 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.96811 -40.67565 -37.87235 -36.62645 -35.95954 -34.87032 -33.88211 -31.59790 -29.48553 -28.95860 -26.82470 -25.72262 -25.08163 -22.34343 -20.05869 -19.64990 -18.59087 -18.21335 -17.91652 -17.78895 -16.59689 -16.41692 -15.93834 -15.81941 -15.35996 -15.19006 -14.80533 -14.41611 -14.13333 -13.91822 -13.65903 -13.43101 -13.26634 -13.10643 -13.03302 -12.66718 -12.48300 -12.35190 -12.30355 -12.09640 -11.96832 -11.04726 -11.02608 -10.27721 -10.08341 -10.01037 -9.48967 -8.54273 -5.84150 -0.69941 0.11356 0.85038 1.44111 1.50331 1.60206 1.82740 2.12945 2.32097 2.38663 2.82938 2.88090 2.97238 3.16102 3.33555 3.51877 3.59065 3.79327 4.03794 4.14747 4.23959 4.43108 4.49366 4.58372 4.79019 4.91599 4.92155 5.12537 5.35560 5.44540 5.48919 5.54184 6.00869 6.31628 6.38269 6.80312 6.87318 7.08183 7.31113 7.93945 8.49705 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.028142 B = 0.004750 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.700952 B = 5893.843652 C = 6489.726847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.036 4.036 3 C -0.158 4.158 4 C 0.458 3.542 5 O -0.608 6.608 6 N -0.437 5.437 7 C -0.350 4.350 8 H 0.089 0.911 9 C 0.016 3.984 10 N -0.869 5.869 11 Si 0.982 3.018 12 H -0.260 1.260 13 H -0.282 1.282 14 H -0.276 1.276 15 C 0.206 3.794 16 C 0.256 3.744 17 N -0.505 5.505 18 C 0.097 3.903 19 C 0.059 3.941 20 N -0.455 5.455 21 C 0.051 3.949 22 C 0.058 3.942 23 N -0.459 5.459 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.142 0.858 28 H 0.282 0.718 29 H 0.140 0.860 30 H 0.131 0.869 31 H 0.190 0.810 32 H 0.210 0.790 33 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.813 -14.638 5.052 16.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.041 4.041 3 C -0.181 4.181 4 C 0.252 3.748 5 O -0.496 6.496 6 N -0.154 5.154 7 C -0.477 4.477 8 H 0.107 0.893 9 C -0.189 4.189 10 N -0.506 5.506 11 Si 0.805 3.195 12 H -0.184 1.184 13 H -0.208 1.208 14 H -0.201 1.201 15 C 0.080 3.920 16 C -0.062 4.062 17 N -0.185 5.185 18 C -0.039 4.039 19 C -0.100 4.100 20 N -0.169 5.169 21 C -0.109 4.109 22 C -0.104 4.104 23 N -0.175 5.175 24 H 0.103 0.897 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.159 0.841 28 H 0.092 0.908 29 H 0.157 0.843 30 H 0.149 0.851 31 H 0.207 0.793 32 H 0.227 0.773 33 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 4.605 -14.442 3.440 15.544 hybrid contribution -0.246 1.281 0.416 1.369 sum 4.359 -13.161 3.855 14.390 Atomic orbital electron populations 1.20798 0.89158 1.01915 1.03323 1.20739 0.96188 0.89725 0.97421 1.23023 1.00883 0.91556 1.02621 1.18415 0.87187 0.84313 0.84900 1.90614 1.16071 1.87316 1.55599 1.43763 1.07155 1.05618 1.58905 1.19659 0.95141 0.83074 1.49797 0.89288 1.25902 0.96302 1.00948 0.95741 1.70084 1.21845 1.28709 1.29925 0.85106 0.78872 0.76537 0.78946 1.18448 1.20812 1.20084 1.19541 0.83638 1.06737 0.82074 1.29859 0.91308 0.89130 0.95892 1.80879 1.10092 1.13286 1.14235 1.20755 0.90607 0.94195 0.98341 1.24149 1.02816 0.87250 0.95798 1.68520 1.10176 1.29134 1.09097 1.24569 0.90496 1.01370 0.94483 1.24469 1.03617 0.87758 0.94588 1.68479 1.08067 1.31786 1.09143 0.89716 0.90603 0.92480 0.84093 0.90754 0.84255 0.85146 0.79305 0.77302 0.77583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.01 8.21 71.24 0.58 -2.43 16 2 C -0.04 -1.20 6.05 -18.26 -0.11 -1.31 16 3 C -0.16 -5.94 8.77 23.63 0.21 -5.73 16 4 C 0.46 21.20 7.48 86.37 0.65 21.85 16 5 O -0.61 -31.33 12.86 -4.46 -0.06 -31.38 16 6 N -0.44 -20.71 2.57 -650.29 -1.67 -22.38 16 7 C -0.35 -18.19 9.41 84.18 0.79 -17.40 16 8 H 0.09 5.04 7.32 -2.91 -0.02 5.02 16 9 C 0.02 0.77 4.88 85.01 0.42 1.18 16 10 N -0.87 -41.79 9.52 21.70 0.21 -41.58 16 11 Si 0.98 38.82 29.66 68.60 2.03 40.85 16 12 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 13 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 14 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 15 C 0.21 8.28 4.92 84.57 0.42 8.69 16 16 C 0.26 11.45 14.26 89.45 1.28 12.73 16 17 N -0.50 -24.33 18.53 20.00 0.37 -23.96 16 18 C 0.10 2.72 6.70 41.70 0.28 3.00 16 19 C 0.06 1.37 10.63 85.07 0.90 2.28 16 20 N -0.46 -9.85 10.49 -193.86 -2.03 -11.89 16 21 C 0.05 0.81 11.22 84.73 0.95 1.76 16 22 C 0.06 1.03 11.22 84.78 0.95 1.98 16 23 N -0.46 -12.15 9.52 -184.68 -1.76 -13.91 16 24 H 0.08 1.92 5.63 -2.39 -0.01 1.90 16 25 H 0.08 2.66 7.00 -2.39 -0.02 2.65 16 26 H 0.06 2.07 7.56 -2.39 -0.02 2.05 16 27 H 0.14 4.82 5.55 -2.91 -0.02 4.80 16 28 H 0.28 12.75 8.31 -92.71 -0.77 11.98 16 29 H 0.14 5.68 5.79 -2.39 -0.01 5.66 16 30 H 0.13 4.09 6.03 -2.39 -0.01 4.07 16 31 H 0.19 3.59 5.94 -2.91 -0.02 3.57 16 32 H 0.21 1.42 8.06 -2.91 -0.02 1.40 16 33 H 0.21 1.93 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -68.07 293.47 5.57 -62.50 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 1.17 Total: 15.15 kcal Atomic # 6 Polarization: 19.28 SS G_CDS: 7.31 Total: 26.59 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -4.89 Total: -113.71 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.06 Total: -31.38 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -68.07 5.57 -62.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584456423.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.987 kcal (2) G-P(sol) polarization free energy of solvation -68.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds