Wall clock time and date at job start Mon Mar 30 2020 01:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34581 * 125.74814 * 2 1 4 4 N 1.30875 * 107.63029 * 180.02562 * 3 2 1 5 5 C 1.34554 * 107.26804 * 359.97438 * 4 3 2 6 6 C 1.47830 * 126.04999 * 179.97438 * 5 4 3 7 7 O 1.21566 * 120.00361 * 180.02562 * 6 5 4 8 8 N 1.34771 * 120.00183 * 0.02562 * 6 5 4 9 9 C 1.39859 * 120.00498 * 185.09704 * 8 6 5 10 10 C 1.39313 * 119.94911 * 33.31299 * 9 8 6 11 11 C 1.38477 * 120.42615 * 180.28189 * 10 9 8 12 12 C 1.37687 * 120.32457 * 359.44858 * 11 10 9 13 13 C 1.40741 * 119.89168 * 0.27790 * 12 11 10 14 14 C 1.41410 * 120.21284 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00035 * 209.18740 * 14 13 12 16 16 C 1.39925 * 120.00022 * 29.18475 * 14 13 12 17 17 N 1.30828 * 119.99834 * 15.65352 * 16 14 13 18 18 Si 1.86801 * 120.00094 * 195.64681 * 16 14 13 19 19 H 1.48498 * 109.46912 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47081 * 120.00267 * 18 16 14 21 21 H 1.48504 * 109.47256 * 240.00346 * 18 16 14 22 22 C 1.38264 * 119.95075 * 213.04731 * 9 8 6 23 23 N 1.28855 * 125.74939 * 180.28713 * 2 1 3 24 24 H 1.09008 * 109.46980 * 90.00370 * 1 2 3 25 25 H 1.09000 * 109.47232 * 210.00137 * 1 2 3 26 26 H 1.08996 * 109.47659 * 330.00713 * 1 2 3 27 27 H 1.07999 * 126.18510 * 359.96047 * 3 2 1 28 28 H 0.97004 * 120.00277 * 5.09758 * 8 6 5 29 29 H 1.08000 * 119.78669 * 0.02866 * 10 9 8 30 30 H 1.08001 * 119.83786 * 179.72423 * 11 10 9 31 31 H 1.08003 * 120.05769 * 180.29862 * 12 11 10 32 32 H 0.97003 * 119.99931 * 179.97438 * 17 16 14 33 33 H 1.07995 * 120.16269 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2512 1.0922 0.0000 4 7 3.4951 0.6853 -0.0006 5 6 3.4751 -0.6601 -0.0003 6 6 4.6573 -1.5477 -0.0013 7 8 4.5113 -2.7546 -0.0015 8 7 5.8970 -1.0190 -0.0020 9 6 7.0135 -1.8543 -0.1106 10 6 6.9387 -3.0202 -0.8694 11 6 8.0364 -3.8573 -0.9789 12 6 9.2181 -3.5402 -0.3475 13 6 9.3105 -2.3628 0.4180 14 6 10.5207 -2.0308 1.0698 15 1 10.5017 -1.4549 1.9832 16 6 11.7427 -2.4486 0.5313 17 7 11.8027 -2.8693 -0.7060 18 14 13.2886 -2.4054 1.5791 19 1 12.9553 -1.8920 2.9321 20 1 13.8478 -3.7763 1.6931 21 1 14.2918 -1.5128 0.9448 22 6 8.1915 -1.5188 0.5309 23 7 2.2178 -1.0458 -0.0052 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5137 27 1 1.9163 2.1190 -0.0006 28 1 6.0149 -0.0591 0.0727 29 1 6.0175 -3.2749 -1.3723 30 1 7.9665 -4.7611 -1.5660 31 1 10.0730 -4.1938 -0.4397 32 1 12.6499 -3.1585 -1.0795 33 1 8.2520 -0.6128 1.1156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001587608905.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:10 Heat of formation + Delta-G solvation = 84.028654 kcal Electronic energy + Delta-G solvation = -19321.861389 eV Core-core repulsion = 16156.688079 eV Total energy + Delta-G solvation = -3165.173310 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.53457 -39.50668 -37.11598 -34.77781 -34.37033 -32.98727 -31.86077 -29.78190 -28.92833 -27.48445 -25.19293 -24.13647 -22.51971 -21.25117 -20.81282 -19.78378 -18.07644 -17.50617 -16.91594 -16.42236 -15.67707 -15.29236 -14.87838 -14.70033 -14.30694 -13.94343 -13.56169 -13.47088 -12.92842 -12.82771 -12.19629 -12.06800 -11.65978 -11.35053 -11.08177 -10.62887 -10.59351 -10.56368 -10.53074 -10.21103 -9.69399 -9.66608 -9.52089 -9.20902 -8.91153 -7.39362 -6.85540 -6.68402 -4.31891 1.34216 2.00015 2.03752 2.83877 2.92256 3.12816 3.18281 3.24071 3.38042 3.71666 4.00016 4.04677 4.20741 4.61130 4.65656 4.71848 4.88713 5.00059 5.72147 5.86098 6.16865 6.28486 6.34751 6.57723 6.76596 6.97012 7.02297 7.08531 7.28559 7.60696 7.66409 7.86607 8.04300 8.08956 8.17706 8.34191 8.58423 8.71501 8.95143 9.00643 10.28723 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.045902 B = 0.003486 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.852617 B = 8029.688599 C = 8442.601058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.309 5.309 3 C 0.188 3.812 4 N -0.484 5.484 5 C 0.152 3.848 6 C 0.605 3.395 7 O -0.501 6.501 8 N -0.642 5.642 9 C 0.151 3.849 10 C -0.222 4.222 11 C -0.096 4.096 12 C -0.160 4.160 13 C 0.124 3.876 14 C -0.468 4.468 15 H 0.078 0.922 16 C 0.077 3.923 17 N -0.799 5.799 18 Si 0.907 3.093 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.276 1.276 22 C -0.236 4.236 23 N -0.255 5.255 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.226 0.774 28 H 0.410 0.590 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.279 0.721 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.513 8.711 0.582 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.105 5.105 3 C -0.108 4.108 4 N -0.210 5.210 5 C -0.128 4.128 6 C 0.387 3.613 7 O -0.373 6.373 8 N -0.287 5.287 9 C 0.060 3.940 10 C -0.243 4.243 11 C -0.115 4.115 12 C -0.180 4.180 13 C 0.121 3.879 14 C -0.498 4.498 15 H 0.096 0.904 16 C -0.140 4.140 17 N -0.425 5.425 18 Si 0.732 3.268 19 H -0.185 1.185 20 H -0.198 1.198 21 H -0.201 1.201 22 C -0.258 4.258 23 N -0.093 5.093 24 H 0.108 0.892 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.242 0.758 28 H 0.246 0.754 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.133 0.867 32 H 0.090 0.910 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.385 7.284 0.386 18.853 hybrid contribution 0.396 0.923 0.358 1.066 sum -16.989 8.207 0.744 18.882 Atomic orbital electron populations 1.22220 0.72379 1.05892 1.04913 1.47396 1.09267 1.03934 1.49878 1.26488 0.85925 0.95940 1.02437 1.71298 1.20363 1.09563 1.19727 1.23911 0.92268 0.89366 1.07279 1.16287 0.81003 0.85932 0.78109 1.90845 1.85192 1.13260 1.47958 1.43119 1.03851 1.10958 1.70748 1.17425 0.85210 0.92609 0.98796 1.20359 0.99065 0.97960 1.06908 1.20573 0.93381 0.97916 0.99604 1.21308 0.96300 0.97957 1.02411 1.17360 0.91377 0.89378 0.89774 1.19507 0.90005 1.31269 1.09019 0.90422 1.25848 1.00873 0.92754 0.94531 1.69828 1.27855 1.32305 1.12537 0.86285 0.80790 0.78665 0.81075 1.18494 1.19813 1.20118 1.20755 0.94154 1.02177 1.08687 1.74369 1.02900 1.13082 1.18997 0.89210 0.88212 0.88044 0.75766 0.75396 0.87915 0.88863 0.86679 0.91043 0.88378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.34 11.38 59.84 0.68 1.02 16 2 N -0.31 -3.09 3.72 -69.40 -0.26 -3.35 16 3 C 0.19 1.76 12.62 -90.48 -1.14 0.61 16 4 N -0.48 -6.85 11.10 -12.37 -0.14 -6.99 16 5 C 0.15 2.60 7.96 -156.36 -1.24 1.36 16 6 C 0.60 12.39 7.57 -12.34 -0.09 12.29 16 7 O -0.50 -11.86 14.75 5.31 0.08 -11.78 16 8 N -0.64 -13.02 5.33 -10.77 -0.06 -13.08 16 9 C 0.15 3.61 6.27 -83.79 -0.53 3.08 16 10 C -0.22 -5.51 8.66 -39.09 -0.34 -5.85 16 11 C -0.10 -2.39 10.01 -39.69 -0.40 -2.78 16 12 C -0.16 -4.28 8.66 -38.84 -0.34 -4.62 16 13 C 0.12 3.37 5.52 -106.85 -0.59 2.78 16 14 C -0.47 -12.55 9.04 -37.74 -0.34 -12.90 16 15 H 0.08 2.01 7.89 -52.49 -0.41 1.59 16 16 C 0.08 1.96 5.15 -17.35 -0.09 1.87 16 17 N -0.80 -20.99 11.15 55.55 0.62 -20.37 16 18 Si 0.91 18.96 29.59 -169.99 -5.03 13.93 16 19 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 22 C -0.24 -5.91 9.70 -38.68 -0.38 -6.28 16 23 N -0.25 -3.93 12.08 32.07 0.39 -3.54 16 24 H 0.09 0.23 8.14 -51.92 -0.42 -0.20 16 25 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.10 0.04 8.14 -51.93 -0.42 -0.39 16 27 H 0.23 0.80 8.06 -52.49 -0.42 0.37 16 28 H 0.41 7.24 8.53 -40.82 -0.35 6.89 16 29 H 0.10 2.53 6.39 -52.49 -0.34 2.19 16 30 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 31 H 0.12 3.14 6.43 -52.48 -0.34 2.80 16 32 H 0.28 6.65 8.30 -40.82 -0.34 6.32 16 33 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 297.70 15.07 4.49 4.49 Total: -1.00 -34.72 297.70 -7.81 -42.52 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -3.11 Total: 7.59 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -4.79 Total: -9.41 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.55 Total: -47.33 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.08 Total: -11.78 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.72 -7.81 -42.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001587608905.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.552 kcal (2) G-P(sol) polarization free energy of solvation -34.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds