Wall clock time and date at job start Mon Mar 30 2020 01:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34581 * 125.74814 * 2 1 4 4 N 1.30875 * 107.63029 * 180.02562 * 3 2 1 5 5 C 1.34554 * 107.26804 * 359.97438 * 4 3 2 6 6 C 1.47830 * 126.04999 * 179.97438 * 5 4 3 7 7 O 1.21566 * 120.00361 * 180.02562 * 6 5 4 8 8 N 1.34771 * 120.00183 * 0.02562 * 6 5 4 9 9 C 1.39859 * 120.00498 * 185.09704 * 8 6 5 10 10 C 1.39313 * 119.94911 * 33.31299 * 9 8 6 11 11 C 1.38477 * 120.42615 * 180.28189 * 10 9 8 12 12 C 1.37687 * 120.32457 * 359.44858 * 11 10 9 13 13 C 1.40741 * 119.89168 * 0.27790 * 12 11 10 14 14 C 1.41410 * 120.21284 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00035 * 209.18740 * 14 13 12 16 16 C 1.39925 * 120.00022 * 29.18475 * 14 13 12 17 17 N 1.30828 * 119.99834 * 15.65352 * 16 14 13 18 18 Si 1.86801 * 120.00094 * 195.64681 * 16 14 13 19 19 H 1.48498 * 109.46912 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47081 * 120.00267 * 18 16 14 21 21 H 1.48504 * 109.47256 * 240.00346 * 18 16 14 22 22 C 1.38264 * 119.95075 * 213.04731 * 9 8 6 23 23 N 1.28855 * 125.74939 * 180.28713 * 2 1 3 24 24 H 1.09008 * 109.46980 * 90.00370 * 1 2 3 25 25 H 1.09000 * 109.47232 * 210.00137 * 1 2 3 26 26 H 1.08996 * 109.47659 * 330.00713 * 1 2 3 27 27 H 1.07999 * 126.18510 * 359.96047 * 3 2 1 28 28 H 0.97004 * 120.00277 * 5.09758 * 8 6 5 29 29 H 1.08000 * 119.78669 * 0.02866 * 10 9 8 30 30 H 1.08001 * 119.83786 * 179.72423 * 11 10 9 31 31 H 1.08003 * 120.05769 * 180.29862 * 12 11 10 32 32 H 0.97003 * 119.99931 * 179.97438 * 17 16 14 33 33 H 1.07995 * 120.16269 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2512 1.0922 0.0000 4 7 3.4951 0.6853 -0.0006 5 6 3.4751 -0.6601 -0.0003 6 6 4.6573 -1.5477 -0.0013 7 8 4.5113 -2.7546 -0.0015 8 7 5.8970 -1.0190 -0.0020 9 6 7.0135 -1.8543 -0.1106 10 6 6.9387 -3.0202 -0.8694 11 6 8.0364 -3.8573 -0.9789 12 6 9.2181 -3.5402 -0.3475 13 6 9.3105 -2.3628 0.4180 14 6 10.5207 -2.0308 1.0698 15 1 10.5017 -1.4549 1.9832 16 6 11.7427 -2.4486 0.5313 17 7 11.8027 -2.8693 -0.7060 18 14 13.2886 -2.4054 1.5791 19 1 12.9553 -1.8920 2.9321 20 1 13.8478 -3.7763 1.6931 21 1 14.2918 -1.5128 0.9448 22 6 8.1915 -1.5188 0.5309 23 7 2.2178 -1.0458 -0.0052 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5137 27 1 1.9163 2.1190 -0.0006 28 1 6.0149 -0.0591 0.0727 29 1 6.0175 -3.2749 -1.3723 30 1 7.9665 -4.7611 -1.5660 31 1 10.0730 -4.1938 -0.4397 32 1 12.6499 -3.1585 -1.0795 33 1 8.2520 -0.6128 1.1156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001587608905.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:10 Heat of formation + Delta-G solvation = 61.015178 kcal Electronic energy + Delta-G solvation = -19322.859329 eV Core-core repulsion = 16156.688079 eV Total energy + Delta-G solvation = -3166.171249 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.48118 -41.20289 -39.00199 -36.24237 -35.60198 -34.81988 -32.82907 -31.77864 -30.50732 -28.48817 -27.17781 -25.38374 -23.54316 -22.95521 -22.47706 -21.39071 -19.50047 -19.17561 -17.81842 -17.53867 -17.39138 -16.91078 -16.58163 -16.09774 -15.94871 -15.33288 -14.92755 -14.64678 -14.12330 -13.98184 -13.96063 -13.57184 -13.19170 -12.87690 -12.80224 -12.53934 -12.39606 -11.98653 -11.58910 -11.57765 -11.48508 -11.34846 -11.10646 -10.80682 -10.59268 -9.40439 -8.78247 -8.61073 -6.36161 0.14465 0.87820 0.96045 1.20416 1.29558 1.42364 1.53318 1.57560 2.05820 2.20904 2.25565 2.77238 3.04658 3.45630 3.70103 3.86773 4.33841 4.40136 4.42825 4.61829 4.69949 4.77205 4.94181 4.99419 5.07438 5.15053 5.29471 5.32243 5.64269 5.68943 5.79354 6.04502 6.08145 6.22650 6.47739 6.65803 6.88408 6.94261 6.99260 7.09860 8.38640 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.045902 B = 0.003486 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.852617 B = 8029.688599 C = 8442.601058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.298 5.298 3 C 0.210 3.790 4 N -0.511 5.511 5 C 0.120 3.880 6 C 0.605 3.395 7 O -0.543 6.543 8 N -0.636 5.636 9 C 0.159 3.841 10 C -0.235 4.235 11 C -0.095 4.095 12 C -0.185 4.185 13 C 0.099 3.901 14 C -0.499 4.499 15 H 0.079 0.921 16 C 0.036 3.964 17 N -0.828 5.828 18 Si 0.985 3.015 19 H -0.258 1.258 20 H -0.266 1.266 21 H -0.265 1.265 22 C -0.247 4.247 23 N -0.279 5.279 24 H 0.108 0.892 25 H 0.095 0.905 26 H 0.147 0.853 27 H 0.287 0.713 28 H 0.423 0.577 29 H 0.102 0.898 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.288 0.712 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.950 10.841 1.095 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.094 5.094 3 C -0.084 4.084 4 N -0.238 5.238 5 C -0.159 4.159 6 C 0.390 3.610 7 O -0.417 6.417 8 N -0.281 5.281 9 C 0.066 3.934 10 C -0.256 4.256 11 C -0.114 4.114 12 C -0.204 4.204 13 C 0.096 3.904 14 C -0.528 4.528 15 H 0.097 0.903 16 C -0.179 4.179 17 N -0.454 5.454 18 Si 0.805 3.195 19 H -0.181 1.181 20 H -0.191 1.191 21 H -0.190 1.190 22 C -0.269 4.269 23 N -0.121 5.121 24 H 0.126 0.874 25 H 0.114 0.886 26 H 0.166 0.834 27 H 0.302 0.698 28 H 0.261 0.739 29 H 0.120 0.880 30 H 0.132 0.868 31 H 0.121 0.879 32 H 0.099 0.901 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -18.872 9.453 0.891 21.126 hybrid contribution 0.592 0.357 0.154 0.708 sum -18.279 9.810 1.045 20.772 Atomic orbital electron populations 1.22809 0.68771 1.08055 1.06823 1.47870 1.11015 1.02874 1.47643 1.27582 0.84239 0.97726 0.98859 1.71218 1.23395 1.07980 1.21157 1.23100 0.91525 0.90214 1.11021 1.16713 0.81764 0.85995 0.76521 1.90800 1.85982 1.15247 1.49690 1.42998 1.03230 1.11183 1.70726 1.17470 0.85998 0.92535 0.97382 1.20478 0.98956 0.98624 1.07576 1.20796 0.92829 0.98612 0.99151 1.21257 0.96603 0.98362 1.04210 1.17730 0.92444 0.89928 0.90281 1.19780 0.90911 1.32621 1.09519 0.90264 1.26746 1.03908 0.91670 0.95551 1.69880 1.29339 1.32230 1.13991 0.85123 0.76259 0.78998 0.79077 1.18135 1.19070 1.19011 1.20898 0.94186 1.02607 1.09215 1.74259 1.02818 1.15789 1.19267 0.87365 0.88579 0.83449 0.69802 0.73923 0.87951 0.86794 0.87899 0.90123 0.87049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.28 11.38 127.77 1.45 1.73 16 2 N -0.30 -5.05 3.72 -373.47 -1.39 -6.44 16 3 C 0.21 3.12 12.62 180.30 2.27 5.39 16 4 N -0.51 -13.56 11.10 -193.06 -2.14 -15.70 16 5 C 0.12 4.07 7.96 137.11 1.09 5.16 16 6 C 0.61 25.41 7.57 86.78 0.66 26.06 16 7 O -0.54 -26.62 14.75 -3.93 -0.06 -26.68 16 8 N -0.64 -26.29 5.33 -306.25 -1.63 -27.93 16 9 C 0.16 7.79 6.27 38.13 0.24 8.03 16 10 C -0.24 -12.02 8.66 22.59 0.20 -11.82 16 11 C -0.10 -4.88 10.01 22.20 0.22 -4.66 16 12 C -0.18 -10.23 8.66 22.75 0.20 -10.03 16 13 C 0.10 5.55 5.52 -21.31 -0.12 5.43 16 14 C -0.50 -27.33 9.04 23.46 0.21 -27.12 16 15 H 0.08 4.17 7.89 -2.91 -0.02 4.14 16 16 C 0.04 1.83 5.15 85.25 0.44 2.27 16 17 N -0.83 -44.11 11.15 21.82 0.24 -43.87 16 18 Si 0.98 38.72 29.59 68.60 2.03 40.75 16 19 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 20 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 21 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 22 C -0.25 -12.71 9.70 22.86 0.22 -12.48 16 23 N -0.28 -8.37 12.08 -52.46 -0.63 -9.00 16 24 H 0.11 0.10 8.14 -2.38 -0.02 0.08 16 25 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.15 -0.75 8.14 -2.39 -0.02 -0.77 16 27 H 0.29 0.21 8.06 -2.91 -0.02 0.18 16 28 H 0.42 15.05 8.53 -92.71 -0.79 14.26 16 29 H 0.10 5.20 6.39 -2.91 -0.02 5.18 16 30 H 0.11 5.20 8.06 -2.91 -0.02 5.18 16 31 H 0.10 5.85 6.43 -2.91 -0.02 5.83 16 32 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 33 H 0.11 5.26 8.06 -2.91 -0.02 5.24 16 Total: -1.00 -79.73 297.70 3.87 -75.86 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.37 Total: 25.04 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 7.08 Total: -12.03 kcal Atomic # 7 Polarization: -97.38 SS G_CDS: -5.56 Total: -102.94 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.06 Total: -26.68 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -79.73 3.87 -75.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001587608905.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.876 kcal (2) G-P(sol) polarization free energy of solvation -79.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds