Wall clock time and date at job start Mon Mar 30 2020 00:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86806 * 119.99793 * 2 1 4 4 H 1.48505 * 109.47191 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47403 * 300.00355 * 3 2 1 6 6 H 1.48498 * 109.46910 * 60.00456 * 3 2 1 7 7 C 1.40027 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00179 * 161.63586 * 7 2 1 9 9 C 1.41535 * 120.00058 * 341.63076 * 7 2 1 10 10 C 1.41177 * 120.99856 * 152.70966 * 9 7 2 11 11 C 1.37588 * 119.01835 * 180.02562 * 10 9 7 12 12 N 1.32083 * 121.10634 * 359.97438 * 11 10 9 13 13 C 1.32461 * 122.23592 * 0.02562 * 12 11 10 14 14 N 1.39470 * 119.58389 * 180.27885 * 13 12 11 15 15 C 1.34778 * 119.99678 * 353.94100 * 14 13 12 16 16 O 1.21283 * 119.99806 * 354.98419 * 15 14 13 17 17 C 1.50695 * 120.00001 * 174.98411 * 15 14 13 18 18 C 1.50701 * 109.47093 * 180.02562 * 17 15 14 19 19 C 1.34672 * 126.58472 * 274.68228 * 18 17 15 20 20 N 1.34131 * 108.01933 * 179.87780 * 19 18 17 21 21 C 1.30503 * 109.25324 * 0.39596 * 20 19 18 22 22 N 1.35041 * 108.69915 * 359.75783 * 21 20 19 23 23 H 0.97004 * 126.39332 * 179.97438 * 22 21 20 24 24 C 1.38598 * 120.84027 * 359.97438 * 13 12 11 25 25 H 0.97001 * 120.00206 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.49309 * 0.02562 * 10 9 7 27 27 H 1.07999 * 119.44510 * 179.97438 * 11 10 9 28 28 H 0.96991 * 120.00358 * 173.94724 * 14 13 12 29 29 H 1.09002 * 109.46907 * 299.99863 * 17 15 14 30 30 H 1.08997 * 109.47175 * 59.99953 * 17 15 14 31 31 H 1.07999 * 125.99459 * 0.02640 * 19 18 17 32 32 H 1.07995 * 125.64826 * 179.73591 * 21 20 19 33 33 H 1.08003 * 120.60630 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 -0.0006 5 1 1.8826 2.3966 -1.2124 6 1 1.8826 2.3964 1.2126 7 6 2.0076 -1.2126 -0.0005 8 1 3.0464 -1.2363 -0.2952 9 6 1.3541 -2.4073 0.3852 10 6 1.7746 -3.6596 -0.1130 11 6 1.1096 -4.7951 0.2887 12 7 0.0917 -4.7290 1.1279 13 6 -0.3417 -3.5798 1.6238 14 7 -1.4180 -3.5747 2.5107 15 6 -2.0879 -4.7165 2.7639 16 8 -1.8143 -5.7282 2.1534 17 6 -3.1768 -4.7362 3.8054 18 6 -3.7620 -6.1221 3.8942 19 6 -4.7439 -6.6296 3.1248 20 7 -4.9711 -7.8909 3.5205 21 6 -4.1731 -8.1814 4.5114 22 7 -3.4019 -7.1050 4.7762 23 1 -2.7204 -7.0402 5.4634 24 6 0.2649 -2.3827 1.2774 25 1 -0.4850 0.8400 0.0004 26 1 2.6059 -3.7253 -0.7992 27 1 1.4252 -5.7567 -0.0884 28 1 -1.6845 -2.7496 2.9453 29 1 -2.7595 -4.4557 4.7726 30 1 -3.9580 -4.0286 3.5277 31 1 -5.2567 -6.1126 2.3272 32 1 -4.1359 -9.1261 5.0334 33 1 -0.0913 -1.4478 1.6843 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588042477.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:28 Heat of formation + Delta-G solvation = 58.775024 kcal Electronic energy + Delta-G solvation = -19518.915498 eV Core-core repulsion = 16352.647108 eV Total energy + Delta-G solvation = -3166.268390 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.99584 -39.55025 -37.79372 -34.37423 -33.75651 -32.74985 -31.77953 -30.59757 -28.82049 -26.80558 -26.01101 -22.25087 -21.95115 -21.45951 -20.76822 -19.76409 -17.99733 -17.60320 -16.93269 -15.81380 -15.23173 -15.18605 -14.72876 -14.28875 -14.16048 -13.94131 -13.73630 -13.36163 -12.96080 -12.83722 -12.74912 -12.58184 -11.89256 -11.48230 -11.28310 -10.93809 -10.32605 -10.21316 -9.98820 -9.95877 -9.78300 -9.46482 -9.36603 -8.33982 -8.03399 -7.77997 -7.08428 -6.88583 -4.64745 2.03006 2.49240 2.73263 2.99331 3.04617 3.09548 3.14168 3.21906 3.40822 3.70542 3.82218 4.59569 4.61289 4.81804 4.99311 5.10757 5.34727 5.48933 5.61896 5.67526 5.95147 6.22909 6.53050 6.58537 6.75219 6.78319 6.88658 7.03077 7.32679 7.37572 7.39765 7.72079 7.86874 8.09282 8.15940 8.37329 8.65205 8.69920 8.82558 9.62823 10.03115 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.037314 B = 0.003817 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.212128 B = 7332.887221 C = 7816.688825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.081 3.919 3 Si 0.909 3.091 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.461 4.461 8 H 0.083 0.917 9 C 0.147 3.853 10 C -0.282 4.282 11 C 0.119 3.881 12 N -0.555 5.555 13 C 0.338 3.662 14 N -0.660 5.660 15 C 0.495 3.505 16 O -0.469 6.469 17 C -0.067 4.067 18 C 0.001 3.999 19 C -0.009 4.009 20 N -0.495 5.495 21 C 0.181 3.819 22 N -0.563 5.563 23 H 0.417 0.583 24 C -0.242 4.242 25 H 0.282 0.718 26 H 0.103 0.897 27 H 0.124 0.876 28 H 0.407 0.593 29 H 0.097 0.903 30 H 0.115 0.885 31 H 0.167 0.833 32 H 0.206 0.794 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.407 -3.152 10.524 12.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.492 4.492 8 H 0.101 0.899 9 C 0.139 3.861 10 C -0.306 4.306 11 C -0.035 4.035 12 N -0.275 5.275 13 C 0.113 3.887 14 N -0.306 5.306 15 C 0.278 3.722 16 O -0.338 6.338 17 C -0.109 4.109 18 C -0.115 4.115 19 C -0.157 4.157 20 N -0.214 5.214 21 C -0.102 4.102 22 N -0.166 5.166 23 H 0.255 0.745 24 C -0.267 4.267 25 H 0.093 0.907 26 H 0.121 0.879 27 H 0.141 0.859 28 H 0.242 0.758 29 H 0.115 0.885 30 H 0.133 0.867 31 H 0.184 0.816 32 H 0.222 0.778 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.512 -5.116 9.975 12.964 hybrid contribution 1.590 2.637 0.548 3.127 sum -4.922 -2.479 10.523 11.879 Atomic orbital electron populations 1.69798 1.07712 1.29440 1.34207 1.25933 0.94713 1.01410 0.91844 0.86252 0.81108 0.80697 0.78659 1.18270 1.19880 1.19607 1.19576 0.98541 0.90879 1.40175 0.89875 1.17554 0.89298 0.92292 0.86960 1.21925 1.06447 0.94045 1.08200 1.21764 0.91244 0.96890 0.93572 1.67183 1.16972 1.26458 1.16844 1.18144 0.88197 0.90813 0.91497 1.43424 1.31063 1.11379 1.44738 1.20487 0.83081 0.84093 0.84499 1.90822 1.63503 1.32116 1.47375 1.20091 0.98236 0.92634 0.99901 1.20470 1.01603 0.92262 0.97183 1.22009 0.99941 0.92021 1.01774 1.70250 1.24787 1.14763 1.11634 1.24865 0.93182 0.93342 0.98841 1.43167 1.31876 1.12315 1.29214 0.74534 1.21407 1.04099 0.95267 1.05956 0.90717 0.87914 0.85894 0.75779 0.88465 0.86660 0.81580 0.77774 0.86139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.13 11.25 55.55 0.63 -18.50 16 2 C 0.08 1.91 5.14 -17.35 -0.09 1.82 16 3 Si 0.91 17.55 29.60 -169.99 -5.03 12.52 16 4 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 5 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.46 -11.67 9.09 -37.66 -0.34 -12.01 16 8 H 0.08 2.03 7.91 -52.48 -0.42 1.61 16 9 C 0.15 3.81 5.55 -106.55 -0.59 3.22 16 10 C -0.28 -6.88 9.90 -38.70 -0.38 -7.27 16 11 C 0.12 2.86 11.15 -17.68 -0.20 2.66 16 12 N -0.56 -14.02 7.89 -12.52 -0.10 -14.12 16 13 C 0.34 7.98 7.40 -154.71 -1.14 6.83 16 14 N -0.66 -12.10 5.39 -11.49 -0.06 -12.16 16 15 C 0.50 8.71 7.77 -10.99 -0.09 8.62 16 16 O -0.47 -10.60 14.33 5.55 0.08 -10.52 16 17 C -0.07 -0.77 6.26 -29.04 -0.18 -0.96 16 18 C 0.00 0.01 5.73 -81.60 -0.47 -0.46 16 19 C -0.01 -0.14 11.79 -17.81 -0.21 -0.35 16 20 N -0.50 -7.51 11.25 -14.67 -0.17 -7.68 16 21 C 0.18 2.11 13.04 -90.37 -1.18 0.93 16 22 N -0.56 -6.19 6.15 -10.30 -0.06 -6.26 16 23 H 0.42 3.26 8.96 -40.82 -0.37 2.89 16 24 C -0.24 -5.97 8.60 -38.47 -0.33 -6.30 16 25 H 0.28 6.17 8.29 -40.82 -0.34 5.83 16 26 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 27 H 0.12 2.59 8.06 -52.49 -0.42 2.17 16 28 H 0.41 5.87 8.70 -40.82 -0.36 5.51 16 29 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.17 2.26 8.06 -52.49 -0.42 1.84 16 32 H 0.21 1.47 8.06 -52.49 -0.42 1.04 16 33 H 0.12 2.93 6.52 -52.48 -0.34 2.58 16 LS Contribution 297.52 15.07 4.48 4.48 Total: -1.00 -34.66 297.52 -8.58 -43.25 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -3.15 Total: 12.25 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -5.20 Total: -3.26 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.24 Total: -58.72 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.08 Total: -10.52 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.52 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -34.66 -8.58 -43.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588042477.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.024 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds