Wall clock time and date at job start Mon Mar 30 2020 00:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86806 * 119.99793 * 2 1 4 4 H 1.48505 * 109.47191 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47403 * 300.00355 * 3 2 1 6 6 H 1.48498 * 109.46910 * 60.00456 * 3 2 1 7 7 C 1.40027 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00179 * 161.63586 * 7 2 1 9 9 C 1.41535 * 120.00058 * 341.63076 * 7 2 1 10 10 C 1.41177 * 120.99856 * 152.70966 * 9 7 2 11 11 C 1.37588 * 119.01835 * 180.02562 * 10 9 7 12 12 N 1.32083 * 121.10634 * 359.97438 * 11 10 9 13 13 C 1.32461 * 122.23592 * 0.02562 * 12 11 10 14 14 N 1.39470 * 119.58389 * 180.27885 * 13 12 11 15 15 C 1.34778 * 119.99678 * 353.94100 * 14 13 12 16 16 O 1.21283 * 119.99806 * 354.98419 * 15 14 13 17 17 C 1.50695 * 120.00001 * 174.98411 * 15 14 13 18 18 C 1.50701 * 109.47093 * 180.02562 * 17 15 14 19 19 C 1.34672 * 126.58472 * 274.68228 * 18 17 15 20 20 N 1.34131 * 108.01933 * 179.87780 * 19 18 17 21 21 C 1.30503 * 109.25324 * 0.39596 * 20 19 18 22 22 N 1.35041 * 108.69915 * 359.75783 * 21 20 19 23 23 H 0.97004 * 126.39332 * 179.97438 * 22 21 20 24 24 C 1.38598 * 120.84027 * 359.97438 * 13 12 11 25 25 H 0.97001 * 120.00206 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.49309 * 0.02562 * 10 9 7 27 27 H 1.07999 * 119.44510 * 179.97438 * 11 10 9 28 28 H 0.96991 * 120.00358 * 173.94724 * 14 13 12 29 29 H 1.09002 * 109.46907 * 299.99863 * 17 15 14 30 30 H 1.08997 * 109.47175 * 59.99953 * 17 15 14 31 31 H 1.07999 * 125.99459 * 0.02640 * 19 18 17 32 32 H 1.07995 * 125.64826 * 179.73591 * 21 20 19 33 33 H 1.08003 * 120.60630 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 -0.0006 5 1 1.8826 2.3966 -1.2124 6 1 1.8826 2.3964 1.2126 7 6 2.0076 -1.2126 -0.0005 8 1 3.0464 -1.2363 -0.2952 9 6 1.3541 -2.4073 0.3852 10 6 1.7746 -3.6596 -0.1130 11 6 1.1096 -4.7951 0.2887 12 7 0.0917 -4.7290 1.1279 13 6 -0.3417 -3.5798 1.6238 14 7 -1.4180 -3.5747 2.5107 15 6 -2.0879 -4.7165 2.7639 16 8 -1.8143 -5.7282 2.1534 17 6 -3.1768 -4.7362 3.8054 18 6 -3.7620 -6.1221 3.8942 19 6 -4.7439 -6.6296 3.1248 20 7 -4.9711 -7.8909 3.5205 21 6 -4.1731 -8.1814 4.5114 22 7 -3.4019 -7.1050 4.7762 23 1 -2.7204 -7.0402 5.4634 24 6 0.2649 -2.3827 1.2774 25 1 -0.4850 0.8400 0.0004 26 1 2.6059 -3.7253 -0.7992 27 1 1.4252 -5.7567 -0.0884 28 1 -1.6845 -2.7496 2.9453 29 1 -2.7595 -4.4557 4.7726 30 1 -3.9580 -4.0286 3.5277 31 1 -5.2567 -6.1126 2.3272 32 1 -4.1359 -9.1261 5.0334 33 1 -0.0913 -1.4478 1.6843 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588042477.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:27 Heat of formation + Delta-G solvation = 35.689475 kcal Electronic energy + Delta-G solvation = -19519.916562 eV Core-core repulsion = 16352.647108 eV Total energy + Delta-G solvation = -3167.269454 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.95314 -41.13959 -39.48991 -36.12015 -35.45368 -33.78013 -32.83785 -32.43381 -30.47547 -28.01567 -27.80713 -23.91926 -23.62330 -22.47196 -21.93876 -21.23326 -19.48569 -18.96015 -18.24578 -17.47716 -16.92226 -16.45132 -16.11333 -15.94256 -15.58527 -15.20695 -15.13808 -14.47821 -14.40493 -14.38311 -14.25053 -13.96026 -13.26552 -13.00295 -12.95373 -12.65380 -12.09686 -11.90966 -11.47382 -11.12835 -11.07564 -10.97449 -10.88156 -9.94213 -9.64434 -9.30752 -8.86451 -8.67781 -6.56100 0.73631 0.98314 1.04761 1.42180 1.52745 1.57150 1.89969 2.10010 2.21029 2.28411 2.43801 2.79586 3.63041 3.72268 3.81442 4.01113 4.15860 4.29903 4.55305 4.61293 4.69801 4.74838 4.85670 4.91723 5.06226 5.20748 5.26914 5.46121 5.63848 5.78143 5.89578 6.14892 6.47719 6.57993 6.62526 6.78345 6.83087 7.14220 7.33852 7.83316 8.26865 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.037314 B = 0.003817 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.212128 B = 7332.887221 C = 7816.688825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.044 3.956 3 Si 0.985 3.015 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.491 4.491 8 H 0.082 0.918 9 C 0.118 3.882 10 C -0.298 4.298 11 C 0.112 3.888 12 N -0.579 5.579 13 C 0.336 3.664 14 N -0.651 5.651 15 C 0.494 3.506 16 O -0.523 6.523 17 C -0.049 4.049 18 C -0.007 4.007 19 C -0.040 4.040 20 N -0.540 5.540 21 C 0.190 3.810 22 N -0.554 5.554 23 H 0.433 0.567 24 C -0.258 4.258 25 H 0.293 0.707 26 H 0.114 0.886 27 H 0.146 0.854 28 H 0.426 0.574 29 H 0.138 0.862 30 H 0.147 0.853 31 H 0.164 0.836 32 H 0.246 0.754 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.559 -2.128 12.158 13.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.174 4.174 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.521 4.521 8 H 0.100 0.900 9 C 0.110 3.890 10 C -0.322 4.322 11 C -0.041 4.041 12 N -0.299 5.299 13 C 0.110 3.890 14 N -0.299 5.299 15 C 0.281 3.719 16 O -0.395 6.395 17 C -0.090 4.090 18 C -0.124 4.124 19 C -0.187 4.187 20 N -0.260 5.260 21 C -0.094 4.094 22 N -0.158 5.158 23 H 0.274 0.726 24 C -0.283 4.283 25 H 0.104 0.896 26 H 0.132 0.868 27 H 0.164 0.836 28 H 0.264 0.736 29 H 0.156 0.844 30 H 0.164 0.836 31 H 0.181 0.819 32 H 0.262 0.738 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.681 -4.072 11.652 14.035 hybrid contribution 1.590 2.239 0.036 2.746 sum -5.091 -1.833 11.688 12.880 Atomic orbital electron populations 1.69820 1.09067 1.31110 1.33683 1.26767 0.95477 1.04432 0.90718 0.85114 0.79383 0.75857 0.79096 1.18299 1.19228 1.18377 1.19845 0.98814 0.91942 1.41510 0.89952 1.17980 0.90189 0.93172 0.87643 1.22097 1.07205 0.94003 1.08916 1.22176 0.90902 0.97828 0.93208 1.67322 1.17646 1.27234 1.17726 1.18422 0.88985 0.90079 0.91515 1.43463 1.29743 1.12985 1.43728 1.21539 0.83206 0.82657 0.84545 1.90800 1.65295 1.33855 1.49585 1.20102 0.96767 0.92657 0.99481 1.20622 1.01231 0.93221 0.97308 1.22216 1.01307 0.92584 1.02628 1.70210 1.26886 1.15297 1.13610 1.25670 0.91671 0.94446 0.97584 1.43180 1.31912 1.11635 1.29116 0.72626 1.21402 1.04665 0.95627 1.06611 0.89600 0.86830 0.83635 0.73611 0.84419 0.83551 0.81852 0.73826 0.86265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.21 11.25 21.84 0.25 -38.96 16 2 C 0.04 2.05 5.14 85.29 0.44 2.49 16 3 Si 0.99 35.17 29.60 68.60 2.03 37.20 16 4 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 5 H -0.27 -9.25 7.11 99.48 0.71 -8.54 16 6 H -0.26 -8.73 7.11 99.48 0.71 -8.03 16 7 C -0.49 -25.15 9.09 23.52 0.21 -24.94 16 8 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 9 C 0.12 6.25 5.55 -21.11 -0.12 6.13 16 10 C -0.30 -14.85 9.90 22.84 0.23 -14.63 16 11 C 0.11 5.46 11.15 84.50 0.94 6.40 16 12 N -0.58 -29.55 7.89 -193.54 -1.53 -31.08 16 13 C 0.34 15.94 7.40 132.76 0.98 16.92 16 14 N -0.65 -23.24 5.39 -308.66 -1.66 -24.90 16 15 C 0.49 16.73 7.77 87.66 0.68 17.41 16 16 O -0.52 -23.57 14.33 -3.04 -0.04 -23.61 16 17 C -0.05 -0.99 6.26 29.10 0.18 -0.81 16 18 C -0.01 -0.17 5.73 40.95 0.23 0.06 16 19 C -0.04 -1.17 11.79 83.52 0.98 -0.18 16 20 N -0.54 -16.04 11.25 -200.31 -2.25 -18.29 16 21 C 0.19 4.04 13.04 180.26 2.35 6.39 16 22 N -0.55 -10.87 6.15 -186.50 -1.15 -12.02 16 23 H 0.43 5.47 8.96 -92.71 -0.83 4.64 16 24 C -0.26 -12.89 8.60 22.99 0.20 -12.70 16 25 H 0.29 12.56 8.29 -92.71 -0.77 11.79 16 26 H 0.11 5.20 8.06 -2.91 -0.02 5.18 16 27 H 0.15 6.15 8.06 -2.91 -0.02 6.13 16 28 H 0.43 11.53 8.70 -92.71 -0.81 10.72 16 29 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.15 2.10 8.14 -2.39 -0.02 2.09 16 31 H 0.16 4.54 8.06 -2.91 -0.02 4.52 16 32 H 0.25 2.74 8.06 -2.91 -0.02 2.72 16 33 H 0.12 5.85 6.52 -2.91 -0.02 5.83 16 Total: -1.00 -77.29 297.52 2.50 -74.79 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: -0.46 Total: 34.32 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 7.32 Total: 2.55 kcal Atomic # 7 Polarization: -118.91 SS G_CDS: -6.35 Total: -125.25 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.04 Total: -23.61 kcal Atomic # 14 Polarization: 35.17 SS G_CDS: 2.03 Total: 37.20 kcal Total: -77.29 2.50 -74.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588042477.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.477 kcal (2) G-P(sol) polarization free energy of solvation -77.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds