Wall clock time and date at job start Mon Mar 30 2020 01:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.47067 * 2 1 4 4 C 1.50699 * 109.46776 * 240.00547 * 2 1 3 5 5 O 1.20821 * 120.00020 * 240.00182 * 4 2 1 6 6 O 1.34234 * 120.00085 * 59.99815 * 4 2 1 7 7 C 1.50699 * 109.47146 * 120.00699 * 2 1 3 8 8 O 1.20825 * 120.00216 * 126.67260 * 7 2 1 9 9 O 1.34234 * 119.99816 * 306.66691 * 7 2 1 10 10 C 1.45199 * 116.99981 * 175.18183 * 9 7 2 11 11 C 1.52994 * 109.47370 * 184.72925 * 10 9 7 12 12 C 1.50695 * 113.56658 * 284.38807 * 11 10 9 13 13 H 1.08001 * 120.00372 * 131.21121 * 12 11 10 14 14 C 1.37878 * 119.99951 * 311.20569 * 12 11 10 15 15 N 1.31516 * 120.00034 * 351.48620 * 14 12 11 16 16 Si 1.86797 * 120.00195 * 171.48546 * 14 12 11 17 17 H 1.48499 * 109.47309 * 89.99833 * 16 14 12 18 18 H 1.48498 * 109.47362 * 210.00196 * 16 14 12 19 19 H 1.48510 * 109.46988 * 329.99878 * 16 14 12 20 20 C 1.53374 * 114.56542 * 58.65879 * 11 10 9 21 21 O 1.43353 * 88.44207 * 86.61003 * 20 11 10 22 22 C 1.43345 * 88.32238 * 28.14999 * 21 20 11 23 23 H 1.09004 * 109.46693 * 304.61359 * 1 2 3 24 24 H 1.08996 * 109.47366 * 64.61489 * 1 2 3 25 25 H 1.08997 * 109.47071 * 184.61955 * 1 2 3 26 26 H 1.08998 * 109.47281 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47809 * 300.00745 * 3 2 1 28 28 H 1.09013 * 109.47099 * 60.00620 * 3 2 1 29 29 H 0.96699 * 116.99457 * 180.02562 * 6 4 2 30 30 H 1.09001 * 109.47146 * 64.72956 * 10 9 7 31 31 H 1.08997 * 109.46936 * 304.73395 * 10 9 7 32 32 H 0.96993 * 120.00049 * 185.02272 * 15 14 12 33 33 H 1.08994 * 113.38829 * 331.71388 * 20 11 10 34 34 H 1.08998 * 113.39293 * 201.50933 * 20 11 10 35 35 H 1.08999 * 113.39148 * 86.75342 * 22 21 20 36 36 H 1.09000 * 113.39298 * 216.90001 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7269 -1.6927 -1.1198 6 8 1.7080 -0.2516 -2.4497 7 6 2.0324 -0.7106 1.2304 8 8 2.8230 -1.6180 1.1235 9 8 1.6016 -0.3352 2.4450 10 6 2.0429 -1.1316 3.5761 11 6 1.3623 -0.6286 4.8506 12 6 1.9414 0.6602 5.3745 13 1 1.2874 1.4777 5.6398 14 6 3.3063 0.7957 5.5153 15 7 4.0908 -0.2475 5.3542 16 14 4.0412 2.4610 5.9349 17 1 4.1244 2.6078 7.4103 18 1 5.4022 2.5631 5.3498 19 1 3.1811 3.5361 5.3782 20 6 -0.1705 -0.6704 4.8139 21 8 -0.1054 -2.0272 5.2722 22 6 1.1329 -1.7052 5.9184 23 1 -0.3633 0.5838 0.8458 24 1 -0.3634 0.4405 -0.9284 25 1 -0.3633 -1.0243 0.0828 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8898 28 1 1.6768 1.9563 0.8901 29 1 2.0534 -0.7408 -3.2089 30 1 3.1242 -1.0435 3.6827 31 1 1.7781 -2.1759 3.4106 32 1 5.0425 -0.1695 5.5243 33 1 -0.5821 -0.5722 3.8095 34 1 -0.6391 0.0059 5.5289 35 1 1.0046 -1.2992 6.9218 36 1 1.8629 -2.5138 5.8825 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588618753.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:56 Heat of formation + Delta-G solvation = -184.254644 kcal Electronic energy + Delta-G solvation = -22224.244692 eV Core-core repulsion = 18675.543323 eV Total energy + Delta-G solvation = -3548.701369 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.91598 -39.86883 -39.04561 -36.22084 -35.46689 -34.97046 -33.14707 -29.83334 -27.48905 -25.84649 -25.14837 -24.65827 -24.43241 -22.69449 -19.74955 -18.65321 -17.80817 -17.09184 -16.48148 -16.42061 -15.92820 -15.45358 -15.35783 -14.81421 -14.78635 -14.28197 -13.96051 -13.72903 -13.10892 -13.01947 -12.27590 -12.19399 -12.13481 -11.96548 -11.76175 -11.55413 -11.48852 -11.29774 -11.04295 -11.01594 -10.59305 -10.48375 -10.36922 -9.70667 -9.54271 -9.28038 -9.00683 -8.67459 -8.49316 -6.19986 -4.28869 2.21321 2.55121 2.78511 3.19998 3.28916 3.31341 3.45557 4.27038 4.65153 4.76319 4.81939 5.00748 5.11392 5.25924 5.53629 5.62457 5.65753 5.71088 5.95540 6.01791 6.09950 6.15877 6.31837 6.33467 6.44239 6.45853 6.74778 6.76390 7.08229 7.10389 7.33128 7.42365 7.78047 7.88904 8.10857 8.44680 8.69124 9.36655 10.83376 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.018739 B = 0.006573 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.837134 B = 4258.881514 C = 4953.596956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.044 4.044 3 C -0.140 4.140 4 C 0.482 3.518 5 O -0.469 6.469 6 O -0.514 6.514 7 C 0.458 3.542 8 O -0.478 6.478 9 O -0.337 6.337 10 C 0.095 3.905 11 C 0.027 3.973 12 C -0.509 4.509 13 H 0.067 0.933 14 C 0.069 3.931 15 N -0.885 5.885 16 Si 0.895 3.105 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.271 1.271 20 C 0.031 3.969 21 O -0.399 6.399 22 C 0.042 3.958 23 H 0.090 0.910 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.410 0.590 30 H 0.118 0.882 31 H 0.040 0.960 32 H 0.267 0.733 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.876 3.596 -10.944 12.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.047 4.047 3 C -0.197 4.197 4 C 0.321 3.679 5 O -0.353 6.353 6 O -0.327 6.327 7 C 0.297 3.703 8 O -0.364 6.364 9 O -0.253 6.253 10 C 0.023 3.977 11 C 0.026 3.974 12 C -0.546 4.546 13 H 0.085 0.915 14 C -0.134 4.134 15 N -0.523 5.523 16 Si 0.723 3.277 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.195 1.195 20 C -0.046 4.046 21 O -0.319 6.319 22 C -0.036 4.036 23 H 0.109 0.891 24 H 0.099 0.901 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.110 0.890 29 H 0.269 0.731 30 H 0.135 0.865 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.521 2.955 -10.622 12.331 hybrid contribution 0.969 0.431 -0.132 1.068 sum -4.553 3.386 -10.754 12.159 Atomic orbital electron populations 1.21875 0.89061 1.03892 1.04790 1.20026 0.99812 0.97573 0.87264 1.21874 1.02117 0.90692 1.05013 1.22637 0.78085 0.82837 0.84349 1.90876 1.33314 1.24593 1.86471 1.84464 1.72667 1.59189 1.16399 1.22419 0.80182 0.82295 0.85377 1.90768 1.30723 1.28074 1.86833 1.86335 1.68311 1.55977 1.14668 1.23184 1.03834 0.90283 0.80434 1.20373 0.90619 0.95817 0.90543 1.20870 0.91696 0.98512 1.43534 0.91478 1.25021 0.97041 0.96890 0.94408 1.69733 1.05570 1.29285 1.47696 0.86526 0.78604 0.84070 0.78539 1.20502 1.21046 1.19541 1.23799 0.99219 0.83132 0.98476 1.89633 1.43148 1.27506 1.71580 1.23900 0.84135 0.97998 0.97520 0.89073 0.90134 0.91674 0.91576 0.90017 0.88976 0.73117 0.86485 0.94161 0.92256 0.91424 0.91427 0.90847 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.27 37.16 0.31 -1.33 16 2 C -0.04 -0.66 0.91 -156.81 -0.14 -0.80 16 3 C -0.14 -1.75 8.39 37.16 0.31 -1.44 16 4 C 0.48 7.19 6.91 36.00 0.25 7.44 16 5 O -0.47 -9.08 14.97 -26.84 -0.40 -9.48 16 6 O -0.51 -5.20 13.14 -39.27 -0.52 -5.72 16 7 C 0.46 9.34 6.56 36.01 0.24 9.57 16 8 O -0.48 -11.54 13.96 -26.84 -0.37 -11.91 16 9 O -0.34 -7.32 9.54 -39.27 -0.37 -7.69 16 10 C 0.10 2.31 4.78 37.15 0.18 2.49 16 11 C 0.03 0.65 0.83 -155.29 -0.13 0.52 16 12 C -0.51 -12.84 8.55 -34.44 -0.29 -13.14 16 13 H 0.07 1.66 7.83 -52.49 -0.41 1.24 16 14 C 0.07 1.78 5.22 -17.82 -0.09 1.69 16 15 N -0.89 -23.77 11.12 55.43 0.62 -23.15 16 16 Si 0.90 20.00 29.55 -169.99 -5.02 14.98 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 20 C 0.03 0.65 7.83 24.60 0.19 0.84 16 21 O -0.40 -9.03 12.60 -35.23 -0.44 -9.48 16 22 C 0.04 0.95 7.85 24.59 0.19 1.14 16 23 H 0.09 1.04 8.12 -51.93 -0.42 0.62 16 24 H 0.08 0.73 8.00 -51.93 -0.42 0.32 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.08 0.78 8.11 -51.93 -0.42 0.36 16 28 H 0.09 1.16 8.14 -51.92 -0.42 0.74 16 29 H 0.41 2.37 9.10 45.56 0.41 2.78 16 30 H 0.12 3.19 5.64 -51.93 -0.29 2.89 16 31 H 0.04 0.98 7.90 -51.93 -0.41 0.57 16 32 H 0.27 6.91 8.32 -40.82 -0.34 6.57 16 33 H 0.07 1.33 7.78 -51.93 -0.40 0.92 16 34 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 35 H 0.07 1.62 8.10 -51.93 -0.42 1.20 16 36 H 0.07 1.59 8.13 -51.93 -0.42 1.17 16 LS Contribution 311.86 15.07 4.70 4.70 Total: -1.00 -32.14 311.86 -4.84 -36.98 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -4.03 Total: 3.80 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 1.01 Total: 6.98 kcal Atomic # 7 Polarization: -23.77 SS G_CDS: 0.62 Total: -23.15 kcal Atomic # 8 Polarization: -42.17 SS G_CDS: -2.11 Total: -44.28 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.14 -4.84 -36.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588618753.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.274 kcal (2) G-P(sol) polarization free energy of solvation -32.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds