Wall clock time and date at job start Mon Mar 30 2020 01:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.47067 * 2 1 4 4 C 1.50699 * 109.46776 * 240.00547 * 2 1 3 5 5 O 1.20821 * 120.00020 * 240.00182 * 4 2 1 6 6 O 1.34234 * 120.00085 * 59.99815 * 4 2 1 7 7 C 1.50699 * 109.47146 * 120.00699 * 2 1 3 8 8 O 1.20825 * 120.00216 * 126.67260 * 7 2 1 9 9 O 1.34234 * 119.99816 * 306.66691 * 7 2 1 10 10 C 1.45199 * 116.99981 * 175.18183 * 9 7 2 11 11 C 1.52994 * 109.47370 * 184.72925 * 10 9 7 12 12 C 1.50695 * 113.56658 * 284.38807 * 11 10 9 13 13 H 1.08001 * 120.00372 * 131.21121 * 12 11 10 14 14 C 1.37878 * 119.99951 * 311.20569 * 12 11 10 15 15 N 1.31516 * 120.00034 * 351.48620 * 14 12 11 16 16 Si 1.86797 * 120.00195 * 171.48546 * 14 12 11 17 17 H 1.48499 * 109.47309 * 89.99833 * 16 14 12 18 18 H 1.48498 * 109.47362 * 210.00196 * 16 14 12 19 19 H 1.48510 * 109.46988 * 329.99878 * 16 14 12 20 20 C 1.53374 * 114.56542 * 58.65879 * 11 10 9 21 21 O 1.43353 * 88.44207 * 86.61003 * 20 11 10 22 22 C 1.43345 * 88.32238 * 28.14999 * 21 20 11 23 23 H 1.09004 * 109.46693 * 304.61359 * 1 2 3 24 24 H 1.08996 * 109.47366 * 64.61489 * 1 2 3 25 25 H 1.08997 * 109.47071 * 184.61955 * 1 2 3 26 26 H 1.08998 * 109.47281 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.47809 * 300.00745 * 3 2 1 28 28 H 1.09013 * 109.47099 * 60.00620 * 3 2 1 29 29 H 0.96699 * 116.99457 * 180.02562 * 6 4 2 30 30 H 1.09001 * 109.47146 * 64.72956 * 10 9 7 31 31 H 1.08997 * 109.46936 * 304.73395 * 10 9 7 32 32 H 0.96993 * 120.00049 * 185.02272 * 15 14 12 33 33 H 1.08994 * 113.38829 * 331.71388 * 20 11 10 34 34 H 1.08998 * 113.39293 * 201.50933 * 20 11 10 35 35 H 1.08999 * 113.39148 * 86.75342 * 22 21 20 36 36 H 1.09000 * 113.39298 * 216.90001 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7269 -1.6927 -1.1198 6 8 1.7080 -0.2516 -2.4497 7 6 2.0324 -0.7106 1.2304 8 8 2.8230 -1.6180 1.1235 9 8 1.6016 -0.3352 2.4450 10 6 2.0429 -1.1316 3.5761 11 6 1.3623 -0.6286 4.8506 12 6 1.9414 0.6602 5.3745 13 1 1.2874 1.4777 5.6398 14 6 3.3063 0.7957 5.5153 15 7 4.0908 -0.2475 5.3542 16 14 4.0412 2.4610 5.9349 17 1 4.1244 2.6078 7.4103 18 1 5.4022 2.5631 5.3498 19 1 3.1811 3.5361 5.3782 20 6 -0.1705 -0.6704 4.8139 21 8 -0.1054 -2.0272 5.2722 22 6 1.1329 -1.7052 5.9184 23 1 -0.3633 0.5838 0.8458 24 1 -0.3634 0.4405 -0.9284 25 1 -0.3633 -1.0243 0.0828 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8898 28 1 1.6768 1.9563 0.8901 29 1 2.0534 -0.7408 -3.2089 30 1 3.1242 -1.0435 3.6827 31 1 1.7781 -2.1759 3.4106 32 1 5.0425 -0.1695 5.5243 33 1 -0.5821 -0.5722 3.8095 34 1 -0.6391 0.0059 5.5289 35 1 1.0046 -1.2992 6.9218 36 1 1.8629 -2.5138 5.8825 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588618753.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:55 Heat of formation + Delta-G solvation = -206.427553 kcal Electronic energy + Delta-G solvation = -22225.206182 eV Core-core repulsion = 18675.543323 eV Total energy + Delta-G solvation = -3549.662858 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.30280 -41.56442 -40.56617 -37.57634 -36.93067 -36.19896 -35.06194 -31.71679 -28.44357 -27.68845 -26.91441 -26.36689 -25.74377 -24.12861 -21.15797 -20.51001 -18.96230 -18.85915 -18.08170 -17.81185 -17.47477 -17.00905 -16.82740 -16.48416 -16.36821 -16.07372 -15.74707 -14.76556 -14.50511 -14.41470 -13.91349 -13.62527 -13.34728 -13.22830 -13.20799 -13.08683 -12.87419 -12.80767 -12.60307 -12.39515 -12.36601 -12.32325 -11.63383 -11.57550 -11.13377 -11.05688 -10.89924 -10.48414 -10.41513 -8.14681 -6.29295 1.04548 1.16069 1.30775 1.43719 1.47697 1.56526 2.15051 2.41334 3.06244 3.28060 3.39510 3.61285 3.69469 4.10633 4.18845 4.22927 4.39673 4.59496 4.61958 4.68605 4.70182 4.71693 4.80525 4.87915 4.97161 5.15511 5.19099 5.25781 5.35247 5.45168 5.51362 5.65082 5.79994 6.17918 6.72327 6.74131 6.94419 7.39095 8.87712 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.018739 B = 0.006573 C = 0.005651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.837134 B = 4258.881514 C = 4953.596956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.042 4.042 3 C -0.136 4.136 4 C 0.492 3.508 5 O -0.524 6.524 6 O -0.489 6.489 7 C 0.449 3.551 8 O -0.523 6.523 9 O -0.334 6.334 10 C 0.106 3.894 11 C 0.010 3.990 12 C -0.514 4.514 13 H 0.074 0.926 14 C 0.024 3.976 15 N -0.915 5.915 16 Si 0.953 3.047 17 H -0.274 1.274 18 H -0.293 1.293 19 H -0.259 1.259 20 C 0.041 3.959 21 O -0.406 6.406 22 C 0.045 3.955 23 H 0.097 0.903 24 H 0.117 0.883 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.122 0.878 28 H 0.092 0.908 29 H 0.433 0.567 30 H 0.084 0.916 31 H 0.026 0.974 32 H 0.264 0.736 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.599 5.829 -12.123 15.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.045 4.045 3 C -0.193 4.193 4 C 0.333 3.667 5 O -0.411 6.411 6 O -0.303 6.303 7 C 0.291 3.709 8 O -0.411 6.411 9 O -0.250 6.250 10 C 0.032 3.968 11 C 0.010 3.990 12 C -0.552 4.552 13 H 0.092 0.908 14 C -0.176 4.176 15 N -0.553 5.553 16 Si 0.779 3.221 17 H -0.199 1.199 18 H -0.219 1.219 19 H -0.183 1.183 20 C -0.036 4.036 21 O -0.326 6.326 22 C -0.032 4.032 23 H 0.115 0.885 24 H 0.136 0.864 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.140 0.860 28 H 0.111 0.889 29 H 0.295 0.705 30 H 0.102 0.898 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.285 5.220 -11.834 14.845 hybrid contribution 1.482 -0.278 0.137 1.514 sum -5.803 4.942 -11.697 13.962 Atomic orbital electron populations 1.21967 0.86141 1.03973 1.07094 1.20200 1.01908 0.97937 0.84411 1.21953 1.01273 0.89061 1.07037 1.22593 0.76833 0.81745 0.85544 1.90876 1.35883 1.27021 1.87355 1.84393 1.71768 1.58615 1.15547 1.23682 0.79116 0.81848 0.86216 1.90750 1.32782 1.30288 1.87318 1.86343 1.68189 1.55540 1.14922 1.22791 1.02000 0.89992 0.81994 1.20469 0.92585 0.95665 0.90314 1.21134 0.91928 0.99089 1.43029 0.90801 1.25732 0.97577 0.99692 0.94588 1.69885 1.05491 1.31106 1.48863 0.85608 0.77447 0.80631 0.78413 1.19939 1.21873 1.18297 1.23841 0.97196 0.82582 0.99941 1.89624 1.42732 1.28553 1.71685 1.23846 0.84135 0.97422 0.97828 0.88461 0.86396 0.92476 0.93026 0.85973 0.88947 0.70462 0.89772 0.95594 0.92675 0.89800 0.89509 0.89969 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 8.27 71.99 0.60 -2.17 16 2 C -0.04 -1.19 0.91 -53.67 -0.05 -1.24 16 3 C -0.14 -3.07 8.39 71.98 0.60 -2.46 16 4 C 0.49 13.92 6.91 71.24 0.49 14.41 16 5 O -0.52 -20.46 14.97 29.72 0.44 -20.01 16 6 O -0.49 -8.16 13.14 -51.46 -0.68 -8.84 16 7 C 0.45 18.56 6.56 71.24 0.47 19.03 16 8 O -0.52 -26.35 13.96 29.71 0.41 -25.93 16 9 O -0.33 -14.62 9.54 -51.45 -0.49 -15.11 16 10 C 0.11 5.29 4.78 71.98 0.34 5.63 16 11 C 0.01 0.49 0.83 -52.69 -0.04 0.45 16 12 C -0.51 -25.63 8.55 25.60 0.22 -25.41 16 13 H 0.07 3.51 7.83 -2.91 -0.02 3.49 16 14 C 0.02 1.23 5.22 84.65 0.44 1.67 16 15 N -0.92 -50.33 11.12 21.45 0.24 -50.09 16 16 Si 0.95 40.70 29.55 68.60 2.03 42.72 16 17 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 18 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 20 C 0.04 1.66 7.83 63.85 0.50 2.16 16 21 O -0.41 -18.07 12.60 -148.98 -1.88 -19.95 16 22 C 0.04 2.06 7.85 63.84 0.50 2.56 16 23 H 0.10 1.90 8.12 -2.38 -0.02 1.88 16 24 H 0.12 1.56 8.00 -2.39 -0.02 1.54 16 25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.12 1.77 8.11 -2.39 -0.02 1.75 16 28 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 29 H 0.43 3.52 9.10 -74.06 -0.67 2.85 16 30 H 0.08 4.81 5.64 -2.39 -0.01 4.79 16 31 H 0.03 1.33 7.90 -2.39 -0.02 1.31 16 32 H 0.26 14.05 8.32 -92.71 -0.77 13.28 16 33 H 0.08 3.12 7.78 -2.39 -0.02 3.10 16 34 H 0.09 3.21 8.10 -2.39 -0.02 3.19 16 35 H 0.08 3.59 8.10 -2.39 -0.02 3.58 16 36 H 0.06 2.70 8.13 -2.39 -0.02 2.68 16 Total: -1.00 -71.60 311.86 4.58 -67.02 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.43 Total: 15.56 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: 4.07 Total: 14.62 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.24 Total: -50.09 kcal Atomic # 8 Polarization: -87.66 SS G_CDS: -2.19 Total: -89.84 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.72 kcal Total: -71.60 4.58 -67.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588618753.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.406 kcal (2) G-P(sol) polarization free energy of solvation -71.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds