Wall clock time and date at job start Mon Mar 30 2020 01:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35851 * 126.13157 * 2 1 4 4 N 1.30173 * 109.00613 * 179.71844 * 3 2 1 5 5 C 1.35762 * 108.86785 * 0.41401 * 4 3 2 6 6 C 1.47277 * 126.23608 * 179.85574 * 5 4 3 7 7 O 1.21621 * 120.00034 * 179.68129 * 6 5 4 8 8 N 1.34775 * 120.00170 * 359.68819 * 6 5 4 9 9 C 1.39173 * 119.99894 * 185.58889 * 8 6 5 10 10 C 1.39697 * 119.57869 * 18.92560 * 9 8 6 11 11 C 1.38649 * 119.49412 * 180.02562 * 10 9 8 12 12 C 1.38355 * 118.67055 * 0.02562 * 11 10 9 13 13 C 1.40578 * 119.13534 * 359.97438 * 12 11 10 14 14 C 1.41329 * 119.78294 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00565 * 8.91985 * 14 13 12 16 16 C 1.40029 * 119.99835 * 188.93358 * 14 13 12 17 17 N 1.30744 * 120.00365 * 196.06882 * 16 14 13 18 18 Si 1.86807 * 120.00033 * 16.06221 * 16 14 13 19 19 H 1.48501 * 109.47026 * 270.00818 * 18 16 14 20 20 H 1.48497 * 109.46752 * 30.00415 * 18 16 14 21 21 H 1.48498 * 109.46942 * 150.00468 * 18 16 14 22 22 N 1.31924 * 119.57446 * 199.22191 * 9 8 6 23 23 C 1.35368 * 126.13479 * 179.97438 * 2 1 3 24 24 H 1.08991 * 109.47595 * 270.02516 * 1 2 3 25 25 H 1.09002 * 109.46828 * 30.03076 * 1 2 3 26 26 H 1.09001 * 109.46984 * 150.02017 * 1 2 3 27 27 H 1.08001 * 125.49466 * 359.97438 * 3 2 1 28 28 H 0.96997 * 120.00069 * 5.58263 * 8 6 5 29 29 H 1.07998 * 120.25102 * 0.04649 * 10 9 8 30 30 H 1.07995 * 120.65943 * 179.97438 * 11 10 9 31 31 H 1.07997 * 120.42837 * 180.02562 * 12 11 10 32 32 H 0.97007 * 119.99513 * 354.92465 * 17 16 14 33 33 H 1.08001 * 126.56557 * 0.02985 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2660 1.0972 0.0000 4 7 3.5100 0.7139 0.0060 5 6 3.5514 -0.6431 0.0009 6 6 4.7652 -1.4771 0.0019 7 8 4.6700 -2.6896 0.0027 8 7 5.9816 -0.8968 0.0022 9 6 7.1262 -1.6798 -0.1142 10 6 7.0250 -2.9782 -0.6198 11 6 8.1664 -3.7569 -0.7345 12 6 9.3790 -3.2195 -0.3409 13 6 9.4154 -1.9065 0.1601 14 6 10.6468 -1.3437 0.5656 15 1 11.5715 -1.8617 0.3586 16 6 10.6678 -0.1145 1.2360 17 7 11.7849 0.5577 1.3341 18 14 9.0995 0.5651 1.9900 19 1 8.3927 1.4045 0.9895 20 1 8.2211 -0.5590 2.4022 21 1 9.4383 1.3898 3.1775 22 7 8.2920 -1.1886 0.2599 23 6 2.2632 -1.0933 0.0005 24 1 -0.3634 0.0005 1.0275 25 1 -0.3633 0.8897 -0.5143 26 1 -0.3633 -0.8902 -0.5135 27 1 1.9256 2.1222 -0.0004 28 1 6.0593 0.0667 0.0834 29 1 6.0651 -3.3721 -0.9194 30 1 8.1098 -4.7632 -1.1225 31 1 10.2859 -3.8008 -0.4183 32 1 12.6131 0.1721 1.0078 33 1 1.9421 -2.1244 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588721177.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:11 Heat of formation + Delta-G solvation = 59.511496 kcal Electronic energy + Delta-G solvation = -19762.578844 eV Core-core repulsion = 16596.342390 eV Total energy + Delta-G solvation = -3166.236454 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.32165 -39.75629 -37.89075 -34.53176 -34.27878 -33.35213 -30.98120 -30.16307 -29.33210 -27.49384 -25.30321 -23.83889 -21.75607 -21.54846 -21.05798 -19.59907 -18.41951 -17.87596 -16.70403 -16.12609 -16.04567 -15.08477 -14.81030 -14.61696 -14.23819 -13.98060 -13.75798 -13.61269 -13.18551 -13.15035 -12.86380 -12.40018 -12.13472 -11.78795 -11.14201 -10.77507 -10.39094 -10.21616 -9.98987 -9.87534 -9.66932 -9.23613 -8.98198 -8.77970 -8.41540 -7.80837 -7.29373 -7.18318 -4.67381 1.45971 2.20604 2.38009 2.72743 2.77726 3.47876 3.61355 3.65427 3.80037 4.01095 4.27916 4.32666 4.44613 4.56353 4.65295 4.70033 4.91743 5.05768 5.33216 5.63820 5.79738 5.95788 6.23229 6.26449 6.56711 6.61498 6.66188 6.79135 7.24544 7.30625 7.52003 7.57940 7.68998 7.80799 7.90201 8.22834 8.39625 8.59076 8.75514 9.54902 10.06139 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.025307 B = 0.005153 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.165515 B = 5432.002351 C = 6410.493882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.464 5.464 3 C 0.185 3.815 4 N -0.460 5.460 5 C -0.056 4.056 6 C 0.605 3.395 7 O -0.520 6.520 8 N -0.640 5.640 9 C 0.385 3.615 10 C -0.310 4.310 11 C -0.037 4.037 12 C -0.279 4.279 13 C 0.275 3.725 14 C -0.483 4.483 15 H 0.084 0.916 16 C 0.051 3.949 17 N -0.805 5.805 18 Si 1.139 2.861 19 H -0.285 1.285 20 H -0.280 1.280 21 H -0.327 1.327 22 N -0.593 5.593 23 C 0.034 3.966 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.213 0.787 28 H 0.415 0.585 29 H 0.139 0.861 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.283 0.717 33 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.091 1.214 -2.340 22.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.146 5.146 3 C -0.099 4.099 4 N -0.179 5.179 5 C -0.186 4.186 6 C 0.392 3.608 7 O -0.396 6.396 8 N -0.283 5.283 9 C 0.154 3.846 10 C -0.335 4.335 11 C -0.061 4.061 12 C -0.301 4.301 13 C 0.151 3.849 14 C -0.515 4.515 15 H 0.102 0.898 16 C -0.171 4.171 17 N -0.427 5.427 18 Si 0.972 3.028 19 H -0.212 1.212 20 H -0.207 1.207 21 H -0.259 1.259 22 N -0.318 5.318 23 C -0.104 4.104 24 H 0.099 0.901 25 H 0.110 0.890 26 H 0.107 0.893 27 H 0.229 0.771 28 H 0.252 0.748 29 H 0.156 0.844 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.095 0.905 33 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -22.036 2.987 -1.281 22.275 hybrid contribution 0.109 -2.122 -1.194 2.437 sum -21.928 0.865 -2.475 22.084 Atomic orbital electron populations 1.22131 0.75859 1.05092 1.04022 1.45360 1.08201 1.06940 1.54097 1.25228 0.85085 0.93597 1.05976 1.70658 1.19563 1.10436 1.17251 1.20507 0.93001 0.90473 1.14572 1.16788 0.81487 0.86400 0.76125 1.90716 1.86291 1.13100 1.49481 1.43027 1.03980 1.11557 1.69751 1.18086 0.85055 0.88840 0.92662 1.21527 1.00237 0.95482 1.16253 1.20904 0.92486 0.97582 0.95136 1.21604 0.97135 0.97563 1.13804 1.18191 0.89597 0.88386 0.88763 1.20645 0.92596 1.05867 1.32363 0.89844 1.27635 1.04526 0.92884 0.92008 1.70625 1.00938 1.36232 1.34934 0.82181 0.71468 0.75004 0.74101 1.21180 1.20722 1.25944 1.66197 0.98294 1.38587 1.28733 1.22574 0.90035 0.93227 1.04601 0.90101 0.89041 0.89290 0.77089 0.74819 0.84406 0.87679 0.87753 0.90535 0.79299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.22 11.15 59.85 0.67 0.89 16 2 N -0.46 -3.87 3.13 -125.77 -0.39 -4.26 16 3 C 0.18 1.81 12.55 -89.90 -1.13 0.68 16 4 N -0.46 -6.73 11.02 -11.04 -0.12 -6.85 16 5 C -0.06 -0.88 6.98 -83.10 -0.58 -1.46 16 6 C 0.61 11.80 7.65 -12.59 -0.10 11.70 16 7 O -0.52 -10.96 13.68 5.26 0.07 -10.89 16 8 N -0.64 -13.81 5.40 -12.42 -0.07 -13.88 16 9 C 0.39 9.58 7.51 -155.05 -1.16 8.42 16 10 C -0.31 -7.42 8.83 -38.89 -0.34 -7.76 16 11 C -0.04 -0.85 10.15 -39.39 -0.40 -1.25 16 12 C -0.28 -6.95 9.83 -38.66 -0.38 -7.33 16 13 C 0.27 7.57 6.27 -85.00 -0.53 7.03 16 14 C -0.48 -13.63 9.51 -37.74 -0.36 -13.99 16 15 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 16 C 0.05 1.44 5.51 -17.34 -0.10 1.35 16 17 N -0.81 -22.52 13.65 55.55 0.76 -21.76 16 18 Si 1.14 29.20 25.93 -169.99 -4.41 24.79 16 19 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.28 -7.40 6.55 56.52 0.37 -7.03 16 21 H -0.33 -8.15 7.11 56.52 0.40 -7.75 16 22 N -0.59 -16.04 5.07 -10.27 -0.05 -16.09 16 23 C 0.03 0.40 11.26 -16.64 -0.19 0.21 16 24 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 25 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 26 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.21 1.13 8.06 -52.49 -0.42 0.70 16 28 H 0.42 8.58 8.55 -40.82 -0.35 8.23 16 29 H 0.14 3.19 5.33 -52.50 -0.28 2.91 16 30 H 0.11 2.04 8.06 -52.49 -0.42 1.62 16 31 H 0.10 2.41 8.06 -52.49 -0.42 1.99 16 32 H 0.28 7.57 8.73 -40.82 -0.36 7.21 16 33 H 0.19 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 293.14 15.07 4.42 4.42 Total: -1.00 -34.84 293.14 -7.59 -42.43 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -3.19 Total: 3.60 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -4.60 Total: -1.50 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: 0.12 Total: -62.85 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.07 Total: -10.89 kcal Atomic # 14 Polarization: 29.20 SS G_CDS: -4.41 Total: 24.79 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -34.84 -7.59 -42.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588721177.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.943 kcal (2) G-P(sol) polarization free energy of solvation -34.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds