Wall clock time and date at job start Mon Mar 30 2020 01:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35851 * 126.13157 * 2 1 4 4 N 1.30173 * 109.00613 * 179.71844 * 3 2 1 5 5 C 1.35762 * 108.86785 * 0.41401 * 4 3 2 6 6 C 1.47277 * 126.23608 * 179.85574 * 5 4 3 7 7 O 1.21621 * 120.00034 * 179.68129 * 6 5 4 8 8 N 1.34775 * 120.00170 * 359.68819 * 6 5 4 9 9 C 1.39173 * 119.99894 * 185.58889 * 8 6 5 10 10 C 1.39697 * 119.57869 * 18.92560 * 9 8 6 11 11 C 1.38649 * 119.49412 * 180.02562 * 10 9 8 12 12 C 1.38355 * 118.67055 * 0.02562 * 11 10 9 13 13 C 1.40578 * 119.13534 * 359.97438 * 12 11 10 14 14 C 1.41329 * 119.78294 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00565 * 8.91985 * 14 13 12 16 16 C 1.40029 * 119.99835 * 188.93358 * 14 13 12 17 17 N 1.30744 * 120.00365 * 196.06882 * 16 14 13 18 18 Si 1.86807 * 120.00033 * 16.06221 * 16 14 13 19 19 H 1.48501 * 109.47026 * 270.00818 * 18 16 14 20 20 H 1.48497 * 109.46752 * 30.00415 * 18 16 14 21 21 H 1.48498 * 109.46942 * 150.00468 * 18 16 14 22 22 N 1.31924 * 119.57446 * 199.22191 * 9 8 6 23 23 C 1.35368 * 126.13479 * 179.97438 * 2 1 3 24 24 H 1.08991 * 109.47595 * 270.02516 * 1 2 3 25 25 H 1.09002 * 109.46828 * 30.03076 * 1 2 3 26 26 H 1.09001 * 109.46984 * 150.02017 * 1 2 3 27 27 H 1.08001 * 125.49466 * 359.97438 * 3 2 1 28 28 H 0.96997 * 120.00069 * 5.58263 * 8 6 5 29 29 H 1.07998 * 120.25102 * 0.04649 * 10 9 8 30 30 H 1.07995 * 120.65943 * 179.97438 * 11 10 9 31 31 H 1.07997 * 120.42837 * 180.02562 * 12 11 10 32 32 H 0.97007 * 119.99513 * 354.92465 * 17 16 14 33 33 H 1.08001 * 126.56557 * 0.02985 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2660 1.0972 0.0000 4 7 3.5100 0.7139 0.0060 5 6 3.5514 -0.6431 0.0009 6 6 4.7652 -1.4771 0.0019 7 8 4.6700 -2.6896 0.0027 8 7 5.9816 -0.8968 0.0022 9 6 7.1262 -1.6798 -0.1142 10 6 7.0250 -2.9782 -0.6198 11 6 8.1664 -3.7569 -0.7345 12 6 9.3790 -3.2195 -0.3409 13 6 9.4154 -1.9065 0.1601 14 6 10.6468 -1.3437 0.5656 15 1 11.5715 -1.8617 0.3586 16 6 10.6678 -0.1145 1.2360 17 7 11.7849 0.5577 1.3341 18 14 9.0995 0.5651 1.9900 19 1 8.3927 1.4045 0.9895 20 1 8.2211 -0.5590 2.4022 21 1 9.4383 1.3898 3.1775 22 7 8.2920 -1.1886 0.2599 23 6 2.2632 -1.0933 0.0005 24 1 -0.3634 0.0005 1.0275 25 1 -0.3633 0.8897 -0.5143 26 1 -0.3633 -0.8902 -0.5135 27 1 1.9256 2.1222 -0.0004 28 1 6.0593 0.0667 0.0834 29 1 6.0651 -3.3721 -0.9194 30 1 8.1098 -4.7632 -1.1225 31 1 10.2859 -3.8008 -0.4183 32 1 12.6131 0.1721 1.0078 33 1 1.9421 -2.1244 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588721177.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:10 Heat of formation + Delta-G solvation = 36.723263 kcal Electronic energy + Delta-G solvation = -19763.567016 eV Core-core repulsion = 16596.342390 eV Total energy + Delta-G solvation = -3167.224626 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.18298 -41.43902 -39.68849 -36.25210 -35.44433 -34.95490 -32.95317 -31.60349 -30.68631 -28.16545 -27.23291 -25.18166 -23.59602 -22.96235 -22.03913 -21.16465 -20.26095 -19.24422 -18.15921 -17.41242 -16.98149 -16.88394 -16.37224 -16.10354 -15.60833 -15.45123 -14.98625 -14.90647 -14.68168 -14.35468 -14.21401 -13.75325 -13.61560 -13.40713 -12.99530 -12.76619 -12.19501 -11.87114 -11.59158 -11.31173 -11.06241 -10.88718 -10.73492 -10.38602 -9.86206 -9.72644 -9.31485 -9.17615 -6.79368 0.24363 0.73801 0.85666 1.43864 1.51544 1.65478 1.66254 1.93232 2.09512 2.39453 2.40085 2.66069 3.31001 3.58599 3.83126 4.00007 4.09230 4.18434 4.38957 4.47022 4.52123 4.68922 4.71635 4.79626 4.80693 5.03191 5.36575 5.37799 5.41203 5.45525 5.73307 5.81068 5.95649 6.10383 6.30044 6.42872 6.64016 6.81294 7.06303 7.54797 7.93859 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.025307 B = 0.005153 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.165515 B = 5432.002351 C = 6410.493882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.452 5.452 3 C 0.201 3.799 4 N -0.509 5.509 5 C -0.105 4.105 6 C 0.605 3.395 7 O -0.544 6.544 8 N -0.646 5.646 9 C 0.370 3.630 10 C -0.307 4.307 11 C -0.028 4.028 12 C -0.291 4.291 13 C 0.257 3.743 14 C -0.512 4.512 15 H 0.074 0.926 16 C 0.027 3.973 17 N -0.824 5.824 18 Si 1.171 2.829 19 H -0.281 1.281 20 H -0.296 1.296 21 H -0.317 1.317 22 N -0.612 5.612 23 C 0.059 3.941 24 H 0.096 0.904 25 H 0.118 0.882 26 H 0.103 0.897 27 H 0.256 0.744 28 H 0.417 0.583 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.119 0.881 32 H 0.284 0.716 33 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.849 1.196 -2.802 26.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.132 5.132 3 C -0.084 4.084 4 N -0.228 5.228 5 C -0.232 4.232 6 C 0.395 3.605 7 O -0.421 6.421 8 N -0.289 5.289 9 C 0.139 3.861 10 C -0.331 4.331 11 C -0.052 4.052 12 C -0.313 4.313 13 C 0.132 3.868 14 C -0.545 4.545 15 H 0.092 0.908 16 C -0.191 4.191 17 N -0.447 5.447 18 Si 1.003 2.997 19 H -0.208 1.208 20 H -0.224 1.224 21 H -0.249 1.249 22 N -0.337 5.337 23 C -0.084 4.084 24 H 0.114 0.886 25 H 0.136 0.864 26 H 0.121 0.879 27 H 0.271 0.729 28 H 0.253 0.747 29 H 0.167 0.833 30 H 0.166 0.834 31 H 0.137 0.863 32 H 0.095 0.905 33 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -25.843 2.989 -1.749 26.074 hybrid contribution 0.969 -2.191 -1.123 2.646 sum -24.874 0.798 -2.872 25.052 Atomic orbital electron populations 1.22577 0.72234 1.07227 1.05685 1.45688 1.10128 1.05505 1.51928 1.26040 0.83942 0.95428 1.02946 1.70553 1.22608 1.10108 1.19545 1.20107 0.92553 0.91140 1.19448 1.17396 0.81791 0.86704 0.74626 1.90657 1.86642 1.14164 1.50678 1.43159 1.03912 1.11443 1.70417 1.18489 0.85451 0.89845 0.92322 1.21880 1.01127 0.95178 1.14916 1.21342 0.91156 0.99193 0.93517 1.21807 0.98695 0.96863 1.13959 1.18435 0.89647 0.89637 0.89125 1.20655 0.92806 1.06668 1.34337 0.90812 1.28216 1.05618 0.93187 0.92093 1.70630 1.01137 1.36532 1.36423 0.81736 0.69719 0.74255 0.74033 1.20801 1.22440 1.24897 1.66161 0.98927 1.39245 1.29358 1.22820 0.89029 0.94804 1.01709 0.88599 0.86367 0.87877 0.72851 0.74676 0.83313 0.83441 0.86334 0.90538 0.77396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.08 11.15 127.77 1.42 1.50 16 2 N -0.45 -5.79 3.13 -551.83 -1.72 -7.52 16 3 C 0.20 3.26 12.55 180.10 2.26 5.52 16 4 N -0.51 -14.18 11.02 -188.83 -2.08 -16.26 16 5 C -0.11 -3.18 6.98 40.50 0.28 -2.89 16 6 C 0.60 23.52 7.65 86.62 0.66 24.18 16 7 O -0.54 -22.64 13.68 -4.10 -0.06 -22.70 16 8 N -0.65 -28.17 5.40 -311.46 -1.68 -29.86 16 9 C 0.37 18.51 7.51 133.28 1.00 19.51 16 10 C -0.31 -14.36 8.83 22.72 0.20 -14.16 16 11 C -0.03 -1.23 10.15 22.40 0.23 -1.01 16 12 C -0.29 -14.37 9.83 22.87 0.22 -14.15 16 13 C 0.26 14.35 6.27 40.19 0.25 14.60 16 14 C -0.51 -29.77 9.51 23.47 0.22 -29.55 16 15 H 0.07 4.29 8.06 -2.91 -0.02 4.26 16 16 C 0.03 1.56 5.51 85.29 0.47 2.03 16 17 N -0.82 -47.14 13.65 21.84 0.30 -46.84 16 18 Si 1.17 60.57 25.93 68.60 1.78 62.35 16 19 H -0.28 -14.16 7.11 99.48 0.71 -13.45 16 20 H -0.30 -15.95 6.55 99.48 0.65 -15.30 16 21 H -0.32 -15.63 7.11 99.48 0.71 -14.93 16 22 N -0.61 -33.52 5.07 -186.40 -0.94 -34.46 16 23 C 0.06 1.20 11.26 83.73 0.94 2.14 16 24 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 25 H 0.12 -0.39 8.14 -2.39 -0.02 -0.41 16 26 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 27 H 0.26 1.51 8.06 -2.91 -0.02 1.49 16 28 H 0.42 17.60 8.55 -92.71 -0.79 16.81 16 29 H 0.15 6.68 5.33 -3.17 -0.02 6.66 16 30 H 0.15 5.21 8.06 -2.91 -0.02 5.18 16 31 H 0.12 5.40 8.06 -2.91 -0.02 5.38 16 32 H 0.28 15.61 8.73 -92.70 -0.81 14.80 16 33 H 0.21 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -77.99 293.14 4.03 -73.96 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.27 Total: 13.58 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 8.17 Total: 7.74 kcal Atomic # 7 Polarization: -128.80 SS G_CDS: -6.13 Total: -134.93 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.06 Total: -22.70 kcal Atomic # 14 Polarization: 60.57 SS G_CDS: 1.78 Total: 62.35 kcal Total: -77.99 4.03 -73.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588721177.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.680 kcal (2) G-P(sol) polarization free energy of solvation -77.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds