Wall clock time and date at job start Mon Mar 30 2020 00:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86805 * 120.00201 * 2 1 4 4 H 1.48504 * 109.46787 * 240.00173 * 3 2 1 5 5 H 1.48506 * 109.46872 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47465 * 119.99605 * 3 2 1 7 7 C 1.40027 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99725 * 179.97438 * 7 2 1 9 9 C 1.41336 * 120.00186 * 0.02562 * 7 2 1 10 10 C 1.40610 * 119.78828 * 180.02562 * 9 7 2 11 11 C 1.38305 * 119.12737 * 179.97438 * 10 9 7 12 12 C 1.38700 * 118.66950 * 359.97438 * 11 10 9 13 13 C 1.39631 * 119.49747 * 0.02562 * 12 11 10 14 14 N 1.39270 * 119.57789 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00150 * 185.31930 * 14 13 12 16 16 O 1.21272 * 119.99943 * 354.85414 * 15 14 13 17 17 C 1.50696 * 119.99793 * 174.84978 * 15 14 13 18 18 N 1.46504 * 109.47132 * 180.02562 * 17 15 14 19 19 C 1.36886 * 126.39690 * 269.97312 * 18 17 15 20 20 C 1.34665 * 106.81547 * 180.02562 * 19 18 17 21 21 N 1.34124 * 108.02094 * 0.02562 * 20 19 18 22 22 C 1.30499 * 109.26026 * 359.97438 * 21 20 19 23 23 N 1.31936 * 120.84958 * 0.27719 * 13 12 11 24 24 H 0.97004 * 119.99758 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.43614 * 359.97438 * 10 9 7 26 26 H 1.08000 * 120.66540 * 179.97438 * 11 10 9 27 27 H 1.07999 * 120.25065 * 180.02562 * 12 11 10 28 28 H 0.96999 * 119.99572 * 5.31641 * 14 13 12 29 29 H 1.09005 * 109.47388 * 60.00214 * 17 15 14 30 30 H 1.09006 * 109.47606 * 300.00385 * 17 15 14 31 31 H 1.08001 * 126.58969 * 0.07896 * 19 18 17 32 32 H 1.08002 * 125.98624 * 180.26756 * 20 19 18 33 33 H 1.07999 * 125.65190 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6963 -1.2126 5 1 1.2765 2.7465 -0.0006 6 1 3.0952 1.6965 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0876 -1.2126 0.0001 9 6 1.3009 -2.4367 0.0005 10 6 2.0085 -3.6518 0.0016 11 6 1.3032 -4.8415 0.0022 12 6 -0.0830 -4.7933 0.0021 13 6 -0.7279 -3.5549 0.0010 14 7 -2.1196 -3.5046 0.0005 15 6 -2.7511 -2.3189 -0.1088 16 8 -2.1108 -1.2890 -0.1126 17 6 -4.2528 -2.2730 -0.2263 18 7 -4.6920 -0.8794 -0.3321 19 6 -5.0201 -0.0501 0.7064 20 6 -5.3664 1.1335 0.1653 21 7 -5.2534 1.0295 -1.1671 22 6 -4.8497 -0.1733 -1.4724 23 7 -0.0357 -2.4317 -0.0055 24 1 -0.4850 0.8401 -0.0004 25 1 3.0884 -3.6560 0.0021 26 1 1.8214 -5.7890 0.0026 27 1 -0.6591 -5.7068 0.0030 28 1 -2.6345 -4.3229 0.0787 29 1 -4.7005 -2.7294 0.6566 30 1 -4.5646 -2.8204 -1.1159 31 1 -5.0035 -0.2972 1.7576 32 1 -5.6766 2.0134 0.7092 33 1 -4.6718 -0.5430 -2.4714 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588722614.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:35 Heat of formation + Delta-G solvation = 97.622318 kcal Electronic energy + Delta-G solvation = -20344.989878 eV Core-core repulsion = 17180.406033 eV Total energy + Delta-G solvation = -3164.583845 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.78779 -39.34764 -37.57563 -34.31324 -33.58912 -33.10402 -30.40256 -29.53694 -29.14766 -27.39243 -25.52781 -22.41988 -21.41795 -21.08868 -20.76351 -19.59342 -18.00007 -17.15250 -16.61854 -16.07427 -15.02547 -14.71856 -14.52279 -14.38963 -13.95015 -13.69047 -13.62040 -13.16985 -12.89842 -12.81429 -12.65755 -12.00571 -11.76138 -11.15645 -11.00976 -10.72801 -10.52900 -10.02267 -9.80072 -9.78587 -9.75900 -9.09820 -9.00384 -8.23531 -8.05067 -7.31676 -7.08689 -6.20524 -4.46495 2.24166 2.65241 2.90765 2.99368 3.16175 3.17267 3.21980 3.45763 3.49515 3.72853 4.03380 4.75428 4.89569 4.95840 4.97074 5.01511 5.11756 5.65286 5.91891 5.95755 6.03515 6.39001 6.46702 6.54109 6.72520 6.77398 6.96935 7.16517 7.34759 7.46456 7.52155 7.73383 7.92331 8.10429 8.32270 8.34711 8.64386 8.96546 9.04368 10.14936 10.41768 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.015042 B = 0.007461 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.017494 B = 3752.122023 C = 5424.602171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.655 5.655 2 C 0.057 3.943 3 Si 0.897 3.103 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.422 4.422 8 H 0.083 0.917 9 C 0.270 3.730 10 C -0.303 4.303 11 C -0.036 4.036 12 C -0.357 4.357 13 C 0.370 3.630 14 N -0.663 5.663 15 C 0.448 3.552 16 O -0.385 6.385 17 C 0.085 3.915 18 N -0.439 5.439 19 C -0.043 4.043 20 C -0.034 4.034 21 N -0.499 5.499 22 C 0.195 3.805 23 N -0.475 5.475 24 H 0.274 0.726 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.400 0.600 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.169 0.831 32 H 0.165 0.835 33 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.824 -4.633 0.743 10.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.274 5.274 2 C -0.172 4.172 3 Si 0.721 3.279 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.453 4.453 8 H 0.101 0.899 9 C 0.145 3.855 10 C -0.326 4.326 11 C -0.060 4.060 12 C -0.383 4.383 13 C 0.131 3.869 14 N -0.311 5.311 15 C 0.227 3.773 16 O -0.246 6.246 17 C -0.043 4.043 18 N -0.121 5.121 19 C -0.175 4.175 20 C -0.181 4.181 21 N -0.217 5.217 22 C -0.088 4.088 23 N -0.194 5.194 24 H 0.086 0.914 25 H 0.115 0.885 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.233 0.767 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.186 0.814 32 H 0.182 0.818 33 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -10.136 -2.308 0.162 10.397 hybrid contribution 0.841 -1.411 0.686 1.780 sum -9.296 -3.719 0.848 10.048 Atomic orbital electron populations 1.70257 1.05819 1.27789 1.23502 1.26174 0.95164 1.00668 0.95235 0.86564 0.80201 0.81443 0.79701 1.19095 1.20280 1.19122 1.19580 0.94107 0.89375 1.42188 0.89913 1.18363 0.87078 0.91988 0.88060 1.21633 0.98626 0.93503 1.18862 1.20567 0.93181 0.96555 0.95712 1.20458 0.94805 0.94823 1.28213 1.18563 0.82990 0.91046 0.94302 1.43292 1.05343 1.08787 1.73715 1.20831 0.88964 0.85790 0.81742 1.91247 1.64347 1.30603 1.38384 1.21743 0.95277 0.81425 1.05834 1.44948 1.48780 1.10879 1.07521 1.22597 1.08618 0.92500 0.93831 1.22149 1.07831 0.97522 0.90640 1.70240 1.19637 1.17044 1.14783 1.24838 1.03535 0.88335 0.92067 1.68671 1.07166 1.23220 1.20334 0.91411 0.88497 0.88551 0.89049 0.76660 0.87010 0.86725 0.81393 0.81765 0.78419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -18.22 8.99 55.55 0.50 -17.72 16 2 C 0.06 1.51 5.50 -17.35 -0.10 1.41 16 3 Si 0.90 19.55 29.56 -169.99 -5.02 14.52 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.42 -11.55 9.14 -37.73 -0.34 -11.89 16 8 H 0.08 2.11 7.85 -52.48 -0.41 1.70 16 9 C 0.27 7.48 6.55 -85.00 -0.56 6.92 16 10 C -0.30 -7.50 9.83 -38.66 -0.38 -7.88 16 11 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 12 C -0.36 -7.67 9.95 -38.89 -0.39 -8.05 16 13 C 0.37 8.58 7.43 -154.97 -1.15 7.43 16 14 N -0.66 -11.69 5.38 -11.40 -0.06 -11.75 16 15 C 0.45 8.06 7.86 -10.99 -0.09 7.98 16 16 O -0.38 -9.21 12.20 5.56 0.07 -9.14 16 17 C 0.08 1.00 6.63 -5.19 -0.03 0.96 16 18 N -0.44 -6.36 2.24 -119.86 -0.27 -6.62 16 19 C -0.04 -0.62 11.58 -16.56 -0.19 -0.81 16 20 C -0.03 -0.53 11.87 -17.82 -0.21 -0.74 16 21 N -0.50 -8.71 11.25 -14.67 -0.17 -8.87 16 22 C 0.19 3.03 12.56 -90.38 -1.14 1.89 16 23 N -0.47 -13.00 5.74 -10.26 -0.06 -13.06 16 24 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 25 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 26 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 27 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 28 H 0.40 5.01 8.70 -40.82 -0.36 4.65 16 29 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.17 2.00 8.06 -52.49 -0.42 1.58 16 32 H 0.17 2.13 8.06 -52.49 -0.42 1.71 16 33 H 0.20 2.50 8.06 -52.49 -0.42 2.07 16 LS Contribution 295.21 15.07 4.45 4.45 Total: -1.00 -35.36 295.21 -8.82 -44.18 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -3.28 Total: 7.98 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -4.97 Total: -3.98 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -0.05 Total: -58.01 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.07 Total: -9.14 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -35.36 -8.82 -44.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588722614.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.801 kcal (2) G-P(sol) polarization free energy of solvation -35.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds