Wall clock time and date at job start Mon Mar 30 2020 00:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86805 * 120.00201 * 2 1 4 4 H 1.48504 * 109.46787 * 240.00173 * 3 2 1 5 5 H 1.48506 * 109.46872 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47465 * 119.99605 * 3 2 1 7 7 C 1.40027 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99725 * 179.97438 * 7 2 1 9 9 C 1.41336 * 120.00186 * 0.02562 * 7 2 1 10 10 C 1.40610 * 119.78828 * 180.02562 * 9 7 2 11 11 C 1.38305 * 119.12737 * 179.97438 * 10 9 7 12 12 C 1.38700 * 118.66950 * 359.97438 * 11 10 9 13 13 C 1.39631 * 119.49747 * 0.02562 * 12 11 10 14 14 N 1.39270 * 119.57789 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00150 * 185.31930 * 14 13 12 16 16 O 1.21272 * 119.99943 * 354.85414 * 15 14 13 17 17 C 1.50696 * 119.99793 * 174.84978 * 15 14 13 18 18 N 1.46504 * 109.47132 * 180.02562 * 17 15 14 19 19 C 1.36886 * 126.39690 * 269.97312 * 18 17 15 20 20 C 1.34665 * 106.81547 * 180.02562 * 19 18 17 21 21 N 1.34124 * 108.02094 * 0.02562 * 20 19 18 22 22 C 1.30499 * 109.26026 * 359.97438 * 21 20 19 23 23 N 1.31936 * 120.84958 * 0.27719 * 13 12 11 24 24 H 0.97004 * 119.99758 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.43614 * 359.97438 * 10 9 7 26 26 H 1.08000 * 120.66540 * 179.97438 * 11 10 9 27 27 H 1.07999 * 120.25065 * 180.02562 * 12 11 10 28 28 H 0.96999 * 119.99572 * 5.31641 * 14 13 12 29 29 H 1.09005 * 109.47388 * 60.00214 * 17 15 14 30 30 H 1.09006 * 109.47606 * 300.00385 * 17 15 14 31 31 H 1.08001 * 126.58969 * 0.07896 * 19 18 17 32 32 H 1.08002 * 125.98624 * 180.26756 * 20 19 18 33 33 H 1.07999 * 125.65190 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6963 -1.2126 5 1 1.2765 2.7465 -0.0006 6 1 3.0952 1.6965 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0876 -1.2126 0.0001 9 6 1.3009 -2.4367 0.0005 10 6 2.0085 -3.6518 0.0016 11 6 1.3032 -4.8415 0.0022 12 6 -0.0830 -4.7933 0.0021 13 6 -0.7279 -3.5549 0.0010 14 7 -2.1196 -3.5046 0.0005 15 6 -2.7511 -2.3189 -0.1088 16 8 -2.1108 -1.2890 -0.1126 17 6 -4.2528 -2.2730 -0.2263 18 7 -4.6920 -0.8794 -0.3321 19 6 -5.0201 -0.0501 0.7064 20 6 -5.3664 1.1335 0.1653 21 7 -5.2534 1.0295 -1.1671 22 6 -4.8497 -0.1733 -1.4724 23 7 -0.0357 -2.4317 -0.0055 24 1 -0.4850 0.8401 -0.0004 25 1 3.0884 -3.6560 0.0021 26 1 1.8214 -5.7890 0.0026 27 1 -0.6591 -5.7068 0.0030 28 1 -2.6345 -4.3229 0.0787 29 1 -4.7005 -2.7294 0.6566 30 1 -4.5646 -2.8204 -1.1159 31 1 -5.0035 -0.2972 1.7576 32 1 -5.6766 2.0134 0.7092 33 1 -4.6718 -0.5430 -2.4714 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588722614.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:34 Heat of formation + Delta-G solvation = 75.352566 kcal Electronic energy + Delta-G solvation = -20345.955567 eV Core-core repulsion = 17180.406033 eV Total energy + Delta-G solvation = -3165.549533 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.91188 -40.90764 -39.26288 -35.99474 -34.88123 -34.77278 -32.24295 -31.19862 -30.34051 -28.67677 -27.34037 -24.03486 -23.17753 -22.22535 -22.06081 -21.03072 -19.69383 -18.46746 -17.99654 -17.68136 -16.49872 -16.28414 -16.23703 -15.76695 -15.42927 -15.12572 -14.87026 -14.67447 -14.33676 -14.17207 -14.01440 -13.71693 -13.10011 -12.84390 -12.76913 -12.60180 -12.34488 -11.83713 -11.52525 -11.13474 -10.94708 -10.88880 -10.38591 -9.91366 -9.37804 -9.10295 -8.84625 -8.09292 -6.44369 0.89396 1.08985 1.23327 1.35791 1.47097 1.49058 1.86686 2.04349 2.22059 2.28094 2.44419 2.96089 3.75696 3.89829 3.91516 4.05595 4.06293 4.22551 4.37976 4.60341 4.74446 4.81537 4.86533 4.95091 5.05894 5.23191 5.35636 5.66638 5.82452 5.86774 5.91995 6.10594 6.27847 6.36369 6.71673 6.81094 7.05751 7.17734 7.62893 8.31848 8.51060 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.015042 B = 0.007461 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.017494 B = 3752.122023 C = 5424.602171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.687 5.687 2 C 0.014 3.986 3 Si 0.968 3.032 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.467 4.467 8 H 0.084 0.916 9 C 0.238 3.762 10 C -0.330 4.330 11 C -0.036 4.036 12 C -0.341 4.341 13 C 0.348 3.652 14 N -0.648 5.648 15 C 0.441 3.559 16 O -0.449 6.449 17 C 0.099 3.901 18 N -0.441 5.441 19 C -0.043 4.043 20 C -0.060 4.060 21 N -0.537 5.537 22 C 0.183 3.817 23 N -0.509 5.509 24 H 0.266 0.734 25 H 0.102 0.898 26 H 0.136 0.864 27 H 0.137 0.863 28 H 0.426 0.574 29 H 0.156 0.844 30 H 0.158 0.842 31 H 0.193 0.807 32 H 0.179 0.821 33 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.012 -6.836 0.989 12.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.306 5.306 2 C -0.212 4.212 3 Si 0.790 3.210 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.498 4.498 8 H 0.102 0.898 9 C 0.112 3.888 10 C -0.353 4.353 11 C -0.060 4.060 12 C -0.366 4.366 13 C 0.109 3.891 14 N -0.299 5.299 15 C 0.223 3.777 16 O -0.314 6.314 17 C -0.027 4.027 18 N -0.123 5.123 19 C -0.176 4.176 20 C -0.206 4.206 21 N -0.256 5.256 22 C -0.100 4.100 23 N -0.229 5.229 24 H 0.076 0.924 25 H 0.120 0.880 26 H 0.154 0.846 27 H 0.154 0.846 28 H 0.264 0.736 29 H 0.173 0.827 30 H 0.176 0.824 31 H 0.210 0.790 32 H 0.196 0.804 33 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -11.368 -4.587 0.416 12.266 hybrid contribution 1.144 -0.972 0.615 1.622 sum -10.224 -5.559 1.032 11.683 Atomic orbital electron populations 1.70481 1.07064 1.27651 1.25356 1.26956 0.95993 1.03760 0.94463 0.85476 0.78723 0.76828 0.80016 1.18422 1.20407 1.18233 1.19855 0.94414 0.90507 1.45017 0.89783 1.18819 0.88067 0.93238 0.88640 1.21802 0.99177 0.93934 1.20396 1.21057 0.93816 0.97201 0.93902 1.21002 0.95043 0.95901 1.24702 1.19129 0.85349 0.90935 0.93664 1.43244 1.03404 1.10413 1.72840 1.21932 0.91477 0.84736 0.79592 1.91256 1.66487 1.32677 1.41013 1.21929 0.90133 0.80641 1.09965 1.45115 1.48231 1.11901 1.07062 1.23038 1.07409 0.92232 0.94958 1.22563 1.08715 0.98863 0.90450 1.70190 1.21047 1.18446 1.15964 1.25295 1.03137 0.88223 0.93326 1.68649 1.07296 1.25640 1.21289 0.92375 0.88022 0.84581 0.84559 0.73559 0.82687 0.82444 0.79004 0.80380 0.76430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -39.86 8.99 21.84 0.20 -39.66 16 2 C 0.01 0.76 5.50 85.29 0.47 1.23 16 3 Si 0.97 41.78 29.56 68.60 2.03 43.81 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.47 -26.66 9.14 23.47 0.21 -26.45 16 8 H 0.08 4.51 7.85 -2.91 -0.02 4.49 16 9 C 0.24 13.56 6.55 40.21 0.26 13.83 16 10 C -0.33 -16.39 9.83 22.86 0.22 -16.17 16 11 C -0.04 -1.48 10.15 22.40 0.23 -1.26 16 12 C -0.34 -13.53 9.95 22.72 0.23 -13.30 16 13 C 0.35 15.67 7.43 133.23 0.99 16.66 16 14 N -0.65 -21.08 5.38 -308.38 -1.66 -22.74 16 15 C 0.44 15.03 7.86 87.66 0.69 15.72 16 16 O -0.45 -21.70 12.20 -3.00 -0.04 -21.73 16 17 C 0.10 1.95 6.63 85.63 0.57 2.51 16 18 N -0.44 -11.86 2.24 -533.13 -1.19 -13.05 16 19 C -0.04 -1.20 11.58 83.08 0.96 -0.23 16 20 C -0.06 -1.85 11.87 83.52 0.99 -0.86 16 21 N -0.54 -18.80 11.25 -200.32 -2.25 -21.05 16 22 C 0.18 5.52 12.56 180.26 2.26 7.78 16 23 N -0.51 -28.31 5.74 -186.36 -1.07 -29.38 16 24 H 0.27 15.01 8.29 -92.70 -0.77 14.24 16 25 H 0.10 4.75 8.06 -2.91 -0.02 4.73 16 26 H 0.14 4.52 8.06 -2.91 -0.02 4.49 16 27 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 28 H 0.43 8.76 8.70 -92.71 -0.81 7.95 16 29 H 0.16 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.16 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.19 4.16 8.06 -2.91 -0.02 4.13 16 32 H 0.18 4.64 8.06 -2.91 -0.02 4.62 16 33 H 0.22 5.25 8.06 -2.91 -0.02 5.23 16 Total: -1.00 -82.45 295.21 4.44 -78.01 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.34 Total: 26.32 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 8.09 Total: -0.53 kcal Atomic # 7 Polarization: -119.90 SS G_CDS: -5.98 Total: -125.88 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.04 Total: -21.73 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -82.45 4.44 -78.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588722614.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.364 kcal (2) G-P(sol) polarization free energy of solvation -82.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds