Wall clock time and date at job start Mon Mar 30 2020 01:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99986 * 2 1 4 4 C 1.53005 * 109.46966 * 177.15055 * 3 2 1 5 5 C 1.50704 * 109.47020 * 297.14803 * 3 2 1 6 6 O 1.20827 * 119.99722 * 144.72994 * 5 3 2 7 7 O 1.34223 * 120.00091 * 325.00131 * 5 3 2 8 8 C 1.50693 * 109.47435 * 57.14908 * 3 2 1 9 9 O 1.20819 * 120.00550 * 212.23781 * 8 3 2 10 10 O 1.34230 * 119.99617 * 32.23761 * 8 3 2 11 11 C 1.45200 * 116.99879 * 185.10854 * 10 8 3 12 12 C 1.53005 * 109.47110 * 184.76040 * 11 10 8 13 13 C 1.50703 * 115.54966 * 185.36483 * 12 11 10 14 14 H 1.08007 * 119.99968 * 144.42725 * 13 12 11 15 15 C 1.37870 * 119.99942 * 324.42767 * 13 12 11 16 16 N 1.31521 * 120.00259 * 167.76563 * 15 13 12 17 17 Si 1.86797 * 120.00225 * 347.76789 * 15 13 12 18 18 H 1.48509 * 109.47221 * 95.58812 * 17 15 13 19 19 H 1.48505 * 109.47402 * 215.58675 * 17 15 13 20 20 H 1.48503 * 109.47012 * 335.58751 * 17 15 13 21 21 C 1.52996 * 117.49982 * 39.68983 * 12 11 10 22 22 C 1.53000 * 117.49854 * 331.03069 * 12 11 10 23 23 H 1.09002 * 109.46884 * 294.63415 * 1 2 3 24 24 H 1.09000 * 109.46981 * 54.63476 * 1 2 3 25 25 H 1.09001 * 109.47109 * 174.63718 * 1 2 3 26 26 H 1.09000 * 109.47027 * 184.84094 * 4 3 2 27 27 H 1.08996 * 109.46951 * 304.84385 * 4 3 2 28 28 H 1.09006 * 109.47060 * 64.84522 * 4 3 2 29 29 H 0.96707 * 117.00135 * 179.72231 * 7 5 3 30 30 H 1.09000 * 109.47347 * 304.75458 * 11 10 8 31 31 H 1.08997 * 109.47677 * 64.76055 * 11 10 8 32 32 H 0.96994 * 120.00109 * 180.02562 * 16 15 13 33 33 H 1.08997 * 117.49971 * 0.02562 * 21 12 11 34 34 H 1.09004 * 117.49876 * 145.02310 * 21 12 11 35 35 H 1.08998 * 117.50172 * 214.98054 * 22 12 11 36 36 H 1.09006 * 117.49579 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5339 1.1853 0.0717 5 6 1.6223 2.0280 -1.2643 6 8 1.4219 3.2194 -1.2420 7 8 1.4940 1.3473 -2.4140 8 6 1.5105 2.0778 1.1935 9 8 1.3674 3.2754 1.1215 10 8 1.2244 1.4354 2.3368 11 6 0.6406 2.2235 3.4075 12 6 0.4956 1.3554 4.6591 13 6 -0.2142 2.0025 5.8203 14 1 -0.8527 1.4115 6.4603 15 6 -0.0486 3.3491 6.0657 16 7 -0.8407 3.9648 6.9162 17 14 1.3006 4.2990 5.1903 18 1 0.7381 4.9620 3.9863 19 1 1.8571 5.3267 6.1067 20 1 2.3794 3.3638 4.7819 21 6 1.6318 0.3820 4.9792 22 6 0.2941 -0.1478 4.4568 23 1 -0.3633 0.4284 0.9342 24 1 -0.3633 0.5948 -0.8380 25 1 -0.3633 -1.0232 -0.0960 26 1 3.9730 2.1792 0.1584 27 1 3.8108 0.5886 0.9408 28 1 3.9033 0.7026 -0.8331 29 1 1.2395 1.8533 -3.1978 30 1 1.2871 3.0730 3.6275 31 1 -0.3409 2.5840 3.0998 32 1 -0.7244 4.9122 7.0885 33 1 2.4828 0.3604 4.2984 34 1 1.8657 0.2095 6.0298 35 1 -0.3515 -0.6687 5.1638 36 1 0.2643 -0.5181 3.4320 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593931931.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:32 Heat of formation + Delta-G solvation = -167.769980 kcal Electronic energy + Delta-G solvation = -22437.201371 eV Core-core repulsion = 18889.214831 eV Total energy + Delta-G solvation = -3547.986540 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.47667 -39.85436 -38.01002 -37.31033 -36.32490 -35.39760 -32.49383 -32.31971 -27.99187 -26.72835 -25.98484 -25.31541 -23.24321 -21.42546 -20.36878 -19.22795 -18.86772 -17.67720 -17.52690 -16.95167 -16.60061 -16.20359 -15.95257 -14.93265 -14.75982 -14.56347 -14.30427 -13.78831 -13.38436 -13.18375 -12.93521 -12.74725 -12.57657 -12.42602 -12.02803 -11.80981 -11.74386 -11.21657 -10.93318 -10.84557 -10.67628 -10.49674 -10.45921 -9.99704 -9.70316 -9.53872 -9.30211 -8.76193 -8.39410 -6.30163 -4.24384 1.68508 1.99713 2.21301 3.09275 3.21151 3.24380 3.28762 3.33183 4.23372 4.40782 4.44806 4.67949 4.82463 5.09352 5.22110 5.23778 5.29302 5.31790 5.60298 5.64132 5.70213 5.75234 5.89498 6.11669 6.15062 6.45083 6.48016 6.55570 6.62892 6.81393 6.94694 7.19760 7.54032 7.56337 7.83993 8.35035 8.74969 9.32283 10.81685 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.025493 B = 0.006482 C = 0.005795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.085825 B = 4318.749232 C = 4830.260872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.335 6.335 3 C 0.145 3.855 4 C -0.141 4.141 5 C 0.459 3.541 6 O -0.465 6.465 7 O -0.501 6.501 8 C 0.431 3.569 9 O -0.466 6.466 10 O -0.334 6.334 11 C 0.083 3.917 12 C 0.003 3.997 13 C -0.483 4.483 14 H 0.087 0.913 15 C 0.079 3.921 16 N -0.882 5.882 17 Si 0.869 3.131 18 H -0.272 1.272 19 H -0.288 1.288 20 H -0.259 1.259 21 C -0.198 4.198 22 C -0.177 4.177 23 H 0.060 0.940 24 H 0.042 0.958 25 H 0.105 0.895 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.412 0.588 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.269 0.731 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.099 -7.639 -16.858 19.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.253 6.253 3 C 0.102 3.898 4 C -0.198 4.198 5 C 0.296 3.704 6 O -0.349 6.349 7 O -0.313 6.313 8 C 0.270 3.730 9 O -0.351 6.351 10 O -0.250 6.250 11 C 0.011 3.989 12 C 0.002 3.998 13 C -0.520 4.520 14 H 0.105 0.895 15 C -0.126 4.126 16 N -0.517 5.517 17 Si 0.699 3.301 18 H -0.198 1.198 19 H -0.216 1.216 20 H -0.185 1.185 21 C -0.236 4.236 22 C -0.214 4.214 23 H 0.079 0.921 24 H 0.061 0.939 25 H 0.124 0.876 26 H 0.106 0.894 27 H 0.118 0.882 28 H 0.111 0.889 29 H 0.271 0.729 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.132 -7.109 -16.354 18.857 hybrid contribution 0.238 1.350 -0.910 1.646 sum 6.370 -5.758 -17.264 19.282 Atomic orbital electron populations 1.23130 0.79469 1.04431 1.01127 1.88101 1.21103 1.22054 1.94073 1.21029 0.98802 0.83780 0.86211 1.21880 0.86701 1.04928 1.06283 1.23366 0.74978 0.86411 0.85609 1.90890 1.42891 1.15628 1.85474 1.84567 1.81631 1.45849 1.19260 1.23374 0.76936 0.87355 0.85377 1.90810 1.46366 1.15012 1.82894 1.86526 1.72765 1.43635 1.22098 1.23713 0.97327 0.94137 0.83739 1.19369 0.99595 0.88597 0.92192 1.20286 1.28157 0.94001 1.09517 0.89520 1.24994 0.95208 0.97326 0.95034 1.69893 1.35836 1.10701 1.35265 0.87212 0.83829 0.79956 0.79099 1.19845 1.21567 1.18476 1.23104 0.91703 1.08502 1.00287 1.22753 1.00252 0.98084 1.00315 0.92107 0.93893 0.87628 0.89421 0.88233 0.88943 0.72892 0.91356 0.90533 0.92082 0.90970 0.89666 0.89951 0.90131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 10.26 101.05 1.04 1.21 16 2 O -0.34 -4.48 9.95 -60.26 -0.60 -5.08 16 3 C 0.15 2.08 1.06 -92.92 -0.10 1.98 16 4 C -0.14 -1.55 8.81 37.16 0.33 -1.23 16 5 C 0.46 6.27 5.93 36.01 0.21 6.49 16 6 O -0.47 -8.04 15.46 -26.54 -0.41 -8.45 16 7 O -0.50 -4.75 12.79 -44.41 -0.57 -5.32 16 8 C 0.43 8.04 5.73 36.00 0.21 8.25 16 9 O -0.47 -10.27 14.39 -26.54 -0.38 -10.65 16 10 O -0.33 -6.59 7.10 -44.63 -0.32 -6.90 16 11 C 0.08 1.89 4.22 37.16 0.16 2.05 16 12 C 0.00 0.08 1.84 -155.66 -0.29 -0.20 16 13 C -0.48 -13.29 9.57 -34.44 -0.33 -13.62 16 14 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 15 C 0.08 2.23 5.42 -17.82 -0.10 2.14 16 16 N -0.88 -26.20 13.96 55.43 0.77 -25.43 16 17 Si 0.87 21.99 24.21 -169.99 -4.12 17.88 16 18 H -0.27 -6.99 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.26 -6.33 6.38 56.52 0.36 -5.97 16 21 C -0.20 -4.17 9.66 -26.70 -0.26 -4.43 16 22 C -0.18 -3.58 9.63 -26.69 -0.26 -3.84 16 23 H 0.06 0.85 6.50 -51.93 -0.34 0.51 16 24 H 0.04 0.48 6.81 -51.93 -0.35 0.13 16 25 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.41 1.97 9.10 45.56 0.41 2.38 16 30 H 0.07 1.68 2.43 -51.93 -0.13 1.56 16 31 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 32 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.07 1.42 7.83 -51.93 -0.41 1.02 16 34 H 0.08 1.79 8.14 -51.93 -0.42 1.36 16 35 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 36 H 0.08 1.48 7.49 -51.93 -0.39 1.09 16 LS Contribution 304.12 15.07 4.58 4.58 Total: -1.00 -33.81 304.12 -4.18 -37.99 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -3.76 Total: 2.60 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 0.61 Total: -1.21 kcal Atomic # 7 Polarization: -26.20 SS G_CDS: 0.77 Total: -25.43 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -2.28 Total: -36.41 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.12 Total: 17.88 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.81 -4.18 -37.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593931931.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.778 kcal (2) G-P(sol) polarization free energy of solvation -33.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds