Wall clock time and date at job start Mon Mar 30 2020 01:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99986 * 2 1 4 4 C 1.53005 * 109.46966 * 177.15055 * 3 2 1 5 5 C 1.50704 * 109.47020 * 297.14803 * 3 2 1 6 6 O 1.20827 * 119.99722 * 144.72994 * 5 3 2 7 7 O 1.34223 * 120.00091 * 325.00131 * 5 3 2 8 8 C 1.50693 * 109.47435 * 57.14908 * 3 2 1 9 9 O 1.20819 * 120.00550 * 212.23781 * 8 3 2 10 10 O 1.34230 * 119.99617 * 32.23761 * 8 3 2 11 11 C 1.45200 * 116.99879 * 185.10854 * 10 8 3 12 12 C 1.53005 * 109.47110 * 184.76040 * 11 10 8 13 13 C 1.50703 * 115.54966 * 185.36483 * 12 11 10 14 14 H 1.08007 * 119.99968 * 144.42725 * 13 12 11 15 15 C 1.37870 * 119.99942 * 324.42767 * 13 12 11 16 16 N 1.31521 * 120.00259 * 167.76563 * 15 13 12 17 17 Si 1.86797 * 120.00225 * 347.76789 * 15 13 12 18 18 H 1.48509 * 109.47221 * 95.58812 * 17 15 13 19 19 H 1.48505 * 109.47402 * 215.58675 * 17 15 13 20 20 H 1.48503 * 109.47012 * 335.58751 * 17 15 13 21 21 C 1.52996 * 117.49982 * 39.68983 * 12 11 10 22 22 C 1.53000 * 117.49854 * 331.03069 * 12 11 10 23 23 H 1.09002 * 109.46884 * 294.63415 * 1 2 3 24 24 H 1.09000 * 109.46981 * 54.63476 * 1 2 3 25 25 H 1.09001 * 109.47109 * 174.63718 * 1 2 3 26 26 H 1.09000 * 109.47027 * 184.84094 * 4 3 2 27 27 H 1.08996 * 109.46951 * 304.84385 * 4 3 2 28 28 H 1.09006 * 109.47060 * 64.84522 * 4 3 2 29 29 H 0.96707 * 117.00135 * 179.72231 * 7 5 3 30 30 H 1.09000 * 109.47347 * 304.75458 * 11 10 8 31 31 H 1.08997 * 109.47677 * 64.76055 * 11 10 8 32 32 H 0.96994 * 120.00109 * 180.02562 * 16 15 13 33 33 H 1.08997 * 117.49971 * 0.02562 * 21 12 11 34 34 H 1.09004 * 117.49876 * 145.02310 * 21 12 11 35 35 H 1.08998 * 117.50172 * 214.98054 * 22 12 11 36 36 H 1.09006 * 117.49579 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5339 1.1853 0.0717 5 6 1.6223 2.0280 -1.2643 6 8 1.4219 3.2194 -1.2420 7 8 1.4940 1.3473 -2.4140 8 6 1.5105 2.0778 1.1935 9 8 1.3674 3.2754 1.1215 10 8 1.2244 1.4354 2.3368 11 6 0.6406 2.2235 3.4075 12 6 0.4956 1.3554 4.6591 13 6 -0.2142 2.0025 5.8203 14 1 -0.8527 1.4115 6.4603 15 6 -0.0486 3.3491 6.0657 16 7 -0.8407 3.9648 6.9162 17 14 1.3006 4.2990 5.1903 18 1 0.7381 4.9620 3.9863 19 1 1.8571 5.3267 6.1067 20 1 2.3794 3.3638 4.7819 21 6 1.6318 0.3820 4.9792 22 6 0.2941 -0.1478 4.4568 23 1 -0.3633 0.4284 0.9342 24 1 -0.3633 0.5948 -0.8380 25 1 -0.3633 -1.0232 -0.0960 26 1 3.9730 2.1792 0.1584 27 1 3.8108 0.5886 0.9408 28 1 3.9033 0.7026 -0.8331 29 1 1.2395 1.8533 -3.1978 30 1 1.2871 3.0730 3.6275 31 1 -0.3409 2.5840 3.0998 32 1 -0.7244 4.9122 7.0885 33 1 2.4828 0.3604 4.2984 34 1 1.8657 0.2095 6.0298 35 1 -0.3515 -0.6687 5.1638 36 1 0.2643 -0.5181 3.4320 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593931931.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:32 Heat of formation + Delta-G solvation = -191.618193 kcal Electronic energy + Delta-G solvation = -22438.235507 eV Core-core repulsion = 18889.214831 eV Total energy + Delta-G solvation = -3549.020676 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.71918 -41.17035 -39.19821 -38.86857 -37.39782 -36.99121 -34.44958 -33.50338 -29.75966 -27.76828 -27.52243 -26.67381 -24.57482 -23.09773 -21.65662 -21.14483 -19.98510 -19.07230 -18.81545 -18.40814 -17.97852 -17.75829 -17.25198 -16.63481 -16.02163 -15.85684 -15.67235 -15.15176 -15.04051 -14.69625 -14.53255 -13.86763 -13.71788 -13.61727 -13.40889 -13.13550 -12.92698 -12.75303 -12.73295 -12.48977 -12.08533 -12.03071 -11.98757 -11.71077 -11.50558 -11.22051 -11.00189 -10.68585 -10.32692 -8.48432 -6.43637 0.49349 0.79437 0.90433 1.18615 1.23557 1.28774 1.93601 2.13977 2.22956 2.70805 3.02747 3.35582 3.45601 3.83621 3.87440 3.96118 4.08171 4.19779 4.32816 4.40732 4.42791 4.50955 4.71260 4.73052 4.90146 4.95334 4.97297 5.12189 5.25435 5.27855 5.48139 5.55722 5.56004 6.15796 6.34332 6.56366 6.70942 7.14773 8.67691 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.025493 B = 0.006482 C = 0.005795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.085825 B = 4318.749232 C = 4830.260872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.330 6.330 3 C 0.147 3.853 4 C -0.142 4.142 5 C 0.470 3.530 6 O -0.508 6.508 7 O -0.482 6.482 8 C 0.429 3.571 9 O -0.504 6.504 10 O -0.325 6.325 11 C 0.092 3.908 12 C -0.034 4.034 13 C -0.483 4.483 14 H 0.056 0.944 15 C 0.033 3.967 16 N -0.926 5.926 17 Si 0.921 3.079 18 H -0.284 1.284 19 H -0.285 1.285 20 H -0.244 1.244 21 C -0.182 4.182 22 C -0.152 4.152 23 H 0.038 0.962 24 H 0.049 0.951 25 H 0.137 0.863 26 H 0.085 0.915 27 H 0.107 0.893 28 H 0.124 0.876 29 H 0.435 0.565 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.271 0.729 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.765 -9.705 -19.205 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.247 6.247 3 C 0.103 3.897 4 C -0.199 4.199 5 C 0.309 3.691 6 O -0.396 6.396 7 O -0.296 6.296 8 C 0.269 3.731 9 O -0.391 6.391 10 O -0.241 6.241 11 C 0.020 3.980 12 C -0.035 4.035 13 C -0.520 4.520 14 H 0.074 0.926 15 C -0.167 4.167 16 N -0.565 5.565 17 Si 0.750 3.250 18 H -0.211 1.211 19 H -0.212 1.212 20 H -0.169 1.169 21 C -0.220 4.220 22 C -0.189 4.189 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.155 0.845 26 H 0.104 0.896 27 H 0.126 0.874 28 H 0.142 0.858 29 H 0.299 0.701 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.813 -9.227 -18.740 22.302 hybrid contribution -0.355 1.857 -0.285 1.912 sum 7.458 -7.369 -19.025 21.723 Atomic orbital electron populations 1.23321 0.78866 1.06425 1.00248 1.88128 1.21718 1.21068 1.93822 1.21145 1.00615 0.83504 0.84423 1.22040 0.84039 1.05444 1.08339 1.23162 0.73917 0.85611 0.86367 1.90893 1.45015 1.17443 1.86215 1.84504 1.80715 1.45340 1.19053 1.24412 0.75529 0.87384 0.85754 1.90799 1.47948 1.16945 1.83386 1.86514 1.72655 1.42811 1.22119 1.23221 0.96455 0.93662 0.84684 1.19239 1.02354 0.90375 0.91545 1.20454 1.27399 0.93867 1.10304 0.92632 1.25592 0.96917 0.98349 0.95817 1.69989 1.37802 1.11179 1.37495 0.86362 0.82061 0.79008 0.77562 1.21080 1.21158 1.16897 1.23102 0.92168 1.05772 1.00908 1.22817 0.99415 0.94879 1.01745 0.94337 0.93200 0.84518 0.89585 0.87442 0.85772 0.70132 0.93069 0.92032 0.91944 0.88929 0.89752 0.89708 0.87678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 10.26 113.37 1.16 1.31 16 2 O -0.33 -7.63 9.95 -125.05 -1.24 -8.87 16 3 C 0.15 3.80 1.06 -12.29 -0.01 3.79 16 4 C -0.14 -2.64 8.81 71.98 0.63 -2.01 16 5 C 0.47 11.72 5.93 71.24 0.42 12.14 16 6 O -0.51 -17.04 15.46 29.41 0.45 -16.58 16 7 O -0.48 -7.36 12.79 -46.40 -0.59 -7.95 16 8 C 0.43 15.41 5.73 71.23 0.41 15.82 16 9 O -0.50 -22.16 14.39 29.44 0.42 -21.73 16 10 O -0.33 -12.25 7.10 -46.28 -0.33 -12.58 16 11 C 0.09 4.19 4.22 71.98 0.30 4.50 16 12 C -0.03 -1.59 1.84 -52.93 -0.10 -1.68 16 13 C -0.48 -27.08 9.57 25.60 0.25 -26.83 16 14 H 0.06 3.38 8.06 -2.91 -0.02 3.35 16 15 C 0.03 1.93 5.42 84.65 0.46 2.39 16 16 N -0.93 -56.86 13.96 21.45 0.30 -56.56 16 17 Si 0.92 46.33 24.21 68.60 1.66 47.99 16 18 H -0.28 -14.67 7.11 99.48 0.71 -13.96 16 19 H -0.28 -13.92 7.11 99.48 0.71 -13.22 16 20 H -0.24 -11.51 6.38 99.48 0.63 -10.88 16 21 C -0.18 -7.19 9.66 30.62 0.30 -6.90 16 22 C -0.15 -5.77 9.63 30.62 0.29 -5.47 16 23 H 0.04 1.00 6.50 -2.39 -0.02 0.98 16 24 H 0.05 0.98 6.81 -2.39 -0.02 0.96 16 25 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.44 2.55 9.10 -74.05 -0.67 1.87 16 30 H 0.05 2.51 2.43 -2.39 -0.01 2.50 16 31 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 33 H 0.09 3.30 7.83 -2.39 -0.02 3.28 16 34 H 0.08 3.35 8.14 -2.38 -0.02 3.33 16 35 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.10 3.49 7.49 -2.38 -0.02 3.47 16 Total: -1.00 -74.84 304.12 5.16 -69.69 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.37 Total: 9.56 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 4.12 Total: -2.95 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.30 Total: -56.56 kcal Atomic # 8 Polarization: -66.44 SS G_CDS: -1.29 Total: -67.72 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.66 Total: 47.99 kcal Total: -74.84 5.16 -69.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593931931.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.932 kcal (2) G-P(sol) polarization free energy of solvation -74.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds