Wall clock time and date at job start Mon Mar 30 2020 00:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99422 * 2 1 4 4 H 1.48507 * 109.47111 * 239.99712 * 3 2 1 5 5 H 1.48496 * 109.47578 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47165 * 120.00308 * 3 2 1 7 7 C 1.37873 * 120.00582 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00122 * 185.64701 * 7 2 1 9 9 C 1.50704 * 119.99636 * 5.64649 * 7 2 1 10 10 C 1.53001 * 113.56706 * 69.38098 * 9 7 2 11 11 O 1.45202 * 109.47245 * 51.06516 * 10 9 7 12 12 C 1.34224 * 116.99855 * 180.02562 * 11 10 9 13 13 O 1.20825 * 120.00095 * 359.97438 * 12 11 10 14 14 C 1.50704 * 119.99846 * 180.02562 * 12 11 10 15 15 C 1.52996 * 109.47281 * 179.97438 * 14 12 11 16 16 C 1.52994 * 109.47293 * 179.97438 * 15 14 12 17 17 C 1.50704 * 109.47479 * 179.97438 * 16 15 14 18 18 O 1.20826 * 119.99691 * 0.02562 * 17 16 15 19 19 O 1.34220 * 120.00214 * 180.02562 * 17 16 15 20 20 C 1.53361 * 114.56646 * 295.10079 * 9 7 2 21 21 O 1.43355 * 88.49754 * 220.44621 * 20 9 7 22 22 C 1.43349 * 88.31764 * 28.12872 * 21 20 9 23 23 H 0.97000 * 120.00757 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47062 * 171.06557 * 10 9 7 25 25 H 1.09005 * 109.47078 * 291.06629 * 10 9 7 26 26 H 1.09000 * 109.46701 * 299.99614 * 14 12 11 27 27 H 1.08998 * 109.47233 * 59.99206 * 14 12 11 28 28 H 1.09000 * 109.47242 * 299.99656 * 15 14 12 29 29 H 1.09003 * 109.46865 * 59.99663 * 15 14 12 30 30 H 1.08994 * 109.47456 * 300.00129 * 16 15 14 31 31 H 1.09003 * 109.47091 * 60.00229 * 16 15 14 32 32 H 0.96706 * 116.99608 * 180.02562 * 19 17 16 33 33 H 1.09006 * 113.39201 * 105.52689 * 20 9 7 34 34 H 1.09003 * 113.39465 * 335.37163 * 20 9 7 35 35 H 1.09000 * 113.38962 * 86.74961 * 22 21 20 36 36 H 1.09003 * 113.38921 * 216.90361 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0806 -1.1962 0.0915 9 6 1.2566 -2.4959 -0.1295 10 6 0.6382 -2.7117 -1.5122 11 8 1.6497 -2.5029 -2.5328 12 6 1.2667 -2.6545 -3.8103 13 8 0.1243 -2.9522 -4.0673 14 6 2.2620 -2.4545 -4.9241 15 6 1.5738 -2.6860 -6.2708 16 6 2.5841 -2.4823 -7.4015 17 6 1.9064 -2.7110 -8.7280 18 8 0.7353 -3.0062 -8.7651 19 8 2.6036 -2.5869 -9.8682 20 6 0.3214 -2.8129 1.0438 21 8 0.7469 -4.1795 0.9647 22 6 1.9961 -3.7158 0.4360 23 1 -0.4851 0.8400 -0.0004 24 1 0.2545 -3.7293 -1.5838 25 1 -0.1780 -2.0044 -1.6596 26 1 2.6515 -1.4372 -4.8849 27 1 3.0828 -3.1624 -4.8094 28 1 1.1846 -3.7034 -6.3098 29 1 0.7528 -1.9783 -6.3856 30 1 2.9729 -1.4649 -7.3625 31 1 3.4053 -3.1898 -7.2869 32 1 2.1257 -2.7429 -10.6943 33 1 -0.7333 -2.6736 0.8064 34 1 0.6113 -2.3224 1.9731 35 1 2.7240 -3.4610 1.2063 36 1 2.4092 -4.3681 -0.3334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594605717.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:06 Heat of formation + Delta-G solvation = -203.180272 kcal Electronic energy + Delta-G solvation = -20908.546667 eV Core-core repulsion = 17359.024622 eV Total energy + Delta-G solvation = -3549.522046 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.47982 -40.00607 -39.32569 -36.50178 -35.85314 -34.42681 -33.00617 -30.11433 -29.18840 -25.67990 -25.08522 -24.49344 -23.56418 -21.02758 -20.03295 -18.69356 -18.24018 -17.16768 -16.96484 -16.63426 -16.40631 -15.86210 -15.41154 -15.06938 -14.69119 -14.38315 -14.16820 -13.90008 -13.41085 -12.79099 -12.62015 -12.25246 -12.05397 -11.82042 -11.72475 -11.54248 -11.37337 -11.07105 -10.94403 -10.91143 -10.80003 -10.66964 -10.55028 -9.86477 -9.79110 -9.04373 -8.97114 -8.71261 -8.49641 -6.18427 -4.22646 1.99846 2.73738 2.81237 3.24275 3.30380 3.31873 3.44191 4.31773 4.57802 4.76802 4.84568 5.09487 5.12704 5.18451 5.26445 5.32575 5.49823 5.59745 5.86216 5.96137 6.04368 6.17077 6.26555 6.30065 6.34889 6.46766 6.67205 6.82381 7.07356 7.14701 7.28815 7.40276 7.66234 7.76836 8.12369 8.47569 8.74490 9.42735 10.90762 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.020063 B = 0.004280 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.265717 B = 6540.946507 C = 7407.426365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.070 3.930 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.506 4.506 8 H 0.065 0.935 9 C 0.022 3.978 10 C 0.108 3.892 11 O -0.332 6.332 12 C 0.452 3.548 13 O -0.522 6.522 14 C -0.114 4.114 15 C -0.100 4.100 16 C -0.113 4.113 17 C 0.477 3.523 18 O -0.511 6.511 19 O -0.521 6.521 20 C 0.059 3.941 21 O -0.403 6.403 22 C 0.030 3.970 23 H 0.265 0.735 24 H 0.044 0.956 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.409 0.591 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.180 -3.101 -12.956 15.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.133 4.133 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.544 4.544 8 H 0.083 0.917 9 C 0.022 3.978 10 C 0.034 3.966 11 O -0.247 6.247 12 C 0.295 3.705 13 O -0.412 6.412 14 C -0.151 4.151 15 C -0.138 4.138 16 C -0.150 4.150 17 C 0.319 3.681 18 O -0.398 6.398 19 O -0.333 6.333 20 C -0.017 4.017 21 O -0.323 6.323 22 C -0.047 4.047 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.099 0.901 26 H 0.124 0.876 27 H 0.122 0.878 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.268 0.732 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.429 -3.333 -12.537 14.478 hybrid contribution -0.018 1.023 -0.573 1.173 sum 6.411 -2.310 -13.110 14.775 Atomic orbital electron populations 1.69901 1.05964 1.27305 1.49360 1.24956 0.94857 0.99204 0.94309 0.86605 0.79615 0.82742 0.78770 1.20087 1.21302 1.20120 1.20687 0.93413 0.89109 1.51168 0.91671 1.20409 0.93512 0.94528 0.89379 1.22784 0.89279 0.99000 0.85496 1.86494 1.43804 1.79593 1.14764 1.23433 0.88416 0.73831 0.84859 1.90637 1.21187 1.44440 1.84959 1.21276 0.97681 1.05594 0.90596 1.21245 0.97296 1.05098 0.90165 1.21381 1.00010 1.05815 0.87840 1.23573 0.85430 0.72717 0.86399 1.90770 1.17716 1.43468 1.87868 1.84539 1.47754 1.83396 1.17625 1.23621 0.99932 0.79133 0.99063 1.89636 1.29773 1.26169 1.86673 1.23841 0.88304 0.95718 0.96802 0.92524 0.93747 0.90053 0.87554 0.87781 0.90007 0.89926 0.87199 0.87262 0.73247 0.91004 0.90761 0.91135 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.86 12.09 55.43 0.67 -23.19 16 2 C 0.07 1.80 5.36 -17.82 -0.10 1.71 16 3 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.51 -12.89 8.01 -34.44 -0.28 -13.17 16 8 H 0.07 1.63 7.82 -52.49 -0.41 1.22 16 9 C 0.02 0.53 0.76 -155.24 -0.12 0.41 16 10 C 0.11 2.54 4.83 37.16 0.18 2.72 16 11 O -0.33 -7.16 9.79 -39.24 -0.38 -7.54 16 12 C 0.45 8.48 7.96 36.01 0.29 8.77 16 13 O -0.52 -11.33 15.73 -18.75 -0.29 -11.62 16 14 C -0.11 -1.41 5.81 -27.88 -0.16 -1.57 16 15 C -0.10 -1.18 3.79 -26.74 -0.10 -1.28 16 16 C -0.11 -0.92 5.81 -27.88 -0.16 -1.08 16 17 C 0.48 4.77 8.33 36.01 0.30 5.07 16 18 O -0.51 -7.19 16.74 -18.75 -0.31 -7.50 16 19 O -0.52 -3.83 13.42 -39.23 -0.53 -4.36 16 20 C 0.06 1.39 7.19 24.58 0.18 1.56 16 21 O -0.40 -9.20 12.57 -35.23 -0.44 -9.64 16 22 C 0.03 0.65 7.89 24.63 0.19 0.84 16 23 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 24 H 0.04 1.02 7.96 -51.93 -0.41 0.61 16 25 H 0.08 2.12 7.58 -51.93 -0.39 1.72 16 26 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.08 1.08 8.06 -51.93 -0.42 0.66 16 29 H 0.08 1.14 8.06 -51.93 -0.42 0.72 16 30 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.41 1.42 9.10 45.56 0.41 1.84 16 33 H 0.07 1.71 8.13 -51.93 -0.42 1.29 16 34 H 0.07 1.74 8.10 -51.93 -0.42 1.32 16 35 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 36 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 LS Contribution 318.86 15.07 4.81 4.81 Total: -1.00 -32.52 318.86 -5.44 -37.96 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -4.15 Total: 2.00 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 0.22 Total: 3.98 kcal Atomic # 7 Polarization: -23.86 SS G_CDS: 0.67 Total: -23.19 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -1.96 Total: -40.67 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.52 -5.44 -37.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605717.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.222 kcal (2) G-P(sol) polarization free energy of solvation -32.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds