Wall clock time and date at job start Mon Mar 30 2020 00:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99422 * 2 1 4 4 H 1.48507 * 109.47111 * 239.99712 * 3 2 1 5 5 H 1.48496 * 109.47578 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47165 * 120.00308 * 3 2 1 7 7 C 1.37873 * 120.00582 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00122 * 185.64701 * 7 2 1 9 9 C 1.50704 * 119.99636 * 5.64649 * 7 2 1 10 10 C 1.53001 * 113.56706 * 69.38098 * 9 7 2 11 11 O 1.45202 * 109.47245 * 51.06516 * 10 9 7 12 12 C 1.34224 * 116.99855 * 180.02562 * 11 10 9 13 13 O 1.20825 * 120.00095 * 359.97438 * 12 11 10 14 14 C 1.50704 * 119.99846 * 180.02562 * 12 11 10 15 15 C 1.52996 * 109.47281 * 179.97438 * 14 12 11 16 16 C 1.52994 * 109.47293 * 179.97438 * 15 14 12 17 17 C 1.50704 * 109.47479 * 179.97438 * 16 15 14 18 18 O 1.20826 * 119.99691 * 0.02562 * 17 16 15 19 19 O 1.34220 * 120.00214 * 180.02562 * 17 16 15 20 20 C 1.53361 * 114.56646 * 295.10079 * 9 7 2 21 21 O 1.43355 * 88.49754 * 220.44621 * 20 9 7 22 22 C 1.43349 * 88.31764 * 28.12872 * 21 20 9 23 23 H 0.97000 * 120.00757 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47062 * 171.06557 * 10 9 7 25 25 H 1.09005 * 109.47078 * 291.06629 * 10 9 7 26 26 H 1.09000 * 109.46701 * 299.99614 * 14 12 11 27 27 H 1.08998 * 109.47233 * 59.99206 * 14 12 11 28 28 H 1.09000 * 109.47242 * 299.99656 * 15 14 12 29 29 H 1.09003 * 109.46865 * 59.99663 * 15 14 12 30 30 H 1.08994 * 109.47456 * 300.00129 * 16 15 14 31 31 H 1.09003 * 109.47091 * 60.00229 * 16 15 14 32 32 H 0.96706 * 116.99608 * 180.02562 * 19 17 16 33 33 H 1.09006 * 113.39201 * 105.52689 * 20 9 7 34 34 H 1.09003 * 113.39465 * 335.37163 * 20 9 7 35 35 H 1.09000 * 113.38962 * 86.74961 * 22 21 20 36 36 H 1.09003 * 113.38921 * 216.90361 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0806 -1.1962 0.0915 9 6 1.2566 -2.4959 -0.1295 10 6 0.6382 -2.7117 -1.5122 11 8 1.6497 -2.5029 -2.5328 12 6 1.2667 -2.6545 -3.8103 13 8 0.1243 -2.9522 -4.0673 14 6 2.2620 -2.4545 -4.9241 15 6 1.5738 -2.6860 -6.2708 16 6 2.5841 -2.4823 -7.4015 17 6 1.9064 -2.7110 -8.7280 18 8 0.7353 -3.0062 -8.7651 19 8 2.6036 -2.5869 -9.8682 20 6 0.3214 -2.8129 1.0438 21 8 0.7469 -4.1795 0.9647 22 6 1.9961 -3.7158 0.4360 23 1 -0.4851 0.8400 -0.0004 24 1 0.2545 -3.7293 -1.5838 25 1 -0.1780 -2.0044 -1.6596 26 1 2.6515 -1.4372 -4.8849 27 1 3.0828 -3.1624 -4.8094 28 1 1.1846 -3.7034 -6.3098 29 1 0.7528 -1.9783 -6.3856 30 1 2.9729 -1.4649 -7.3625 31 1 3.4053 -3.1898 -7.2869 32 1 2.1257 -2.7429 -10.6943 33 1 -0.7333 -2.6736 0.8064 34 1 0.6113 -2.3224 1.9731 35 1 2.7240 -3.4610 1.2063 36 1 2.4092 -4.3681 -0.3334 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594605717.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:05 Heat of formation + Delta-G solvation = -225.765875 kcal Electronic energy + Delta-G solvation = -20909.526053 eV Core-core repulsion = 17359.024622 eV Total energy + Delta-G solvation = -3550.501431 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.77096 -41.26965 -40.92915 -37.55222 -37.12472 -35.45715 -34.93451 -31.89184 -30.25628 -27.42263 -26.88124 -26.33332 -24.69646 -21.96075 -21.26455 -20.54211 -19.00755 -18.84274 -18.43430 -17.72743 -17.56407 -17.16592 -16.97000 -16.78894 -16.28248 -15.99138 -15.77415 -15.41950 -14.35058 -14.21314 -13.96886 -13.63307 -13.38927 -13.11894 -13.06942 -12.88299 -12.75956 -12.55454 -12.51002 -12.42317 -12.33995 -11.82184 -11.65622 -11.58142 -11.42051 -10.91287 -10.83226 -10.57105 -10.40258 -8.14024 -6.23959 1.25770 1.32497 1.48130 1.49320 1.56370 1.79985 2.30098 2.45997 3.16587 3.32812 3.60133 3.90136 3.94718 3.99418 4.13729 4.22062 4.41837 4.53778 4.58806 4.61676 4.68106 4.70290 4.76165 4.83180 4.96522 5.05637 5.23696 5.27088 5.38009 5.42488 5.67321 5.75620 5.78494 6.20718 6.76611 6.90248 7.03055 7.44320 8.94088 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.020063 B = 0.004280 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.265717 B = 6540.946507 C = 7407.426365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.513 4.513 8 H 0.069 0.931 9 C 0.008 3.992 10 C 0.119 3.881 11 O -0.339 6.339 12 C 0.441 3.559 13 O -0.560 6.560 14 C -0.101 4.101 15 C -0.096 4.096 16 C -0.105 4.105 17 C 0.480 3.520 18 O -0.563 6.563 19 O -0.512 6.512 20 C 0.063 3.937 21 O -0.408 6.408 22 C 0.039 3.961 23 H 0.262 0.738 24 H 0.041 0.959 25 H 0.046 0.954 26 H 0.132 0.868 27 H 0.144 0.856 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.426 0.574 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.174 -2.775 -13.885 17.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.175 4.175 3 Si 0.779 3.221 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.550 4.550 8 H 0.087 0.913 9 C 0.007 3.993 10 C 0.045 3.955 11 O -0.254 6.254 12 C 0.287 3.713 13 O -0.452 6.452 14 C -0.137 4.137 15 C -0.134 4.134 16 C -0.142 4.142 17 C 0.325 3.675 18 O -0.455 6.455 19 O -0.325 6.325 20 C -0.014 4.014 21 O -0.328 6.328 22 C -0.037 4.037 23 H 0.071 0.929 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.150 0.850 27 H 0.162 0.838 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.156 0.844 31 H 0.162 0.838 32 H 0.287 0.713 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.467 -3.014 -13.494 16.757 hybrid contribution -0.954 0.881 -0.359 1.347 sum 8.513 -2.132 -13.853 16.399 Atomic orbital electron populations 1.70033 1.07317 1.27672 1.50472 1.25660 0.95460 1.02238 0.94137 0.85684 0.78394 0.78862 0.79204 1.19196 1.21877 1.19288 1.20944 0.93672 0.89829 1.50604 0.91258 1.20504 0.94119 0.95299 0.89374 1.22414 0.88964 0.97629 0.86475 1.86502 1.43079 1.80085 1.15773 1.24844 0.89310 0.72215 0.84912 1.90624 1.23335 1.46105 1.85132 1.21470 0.96602 1.08114 0.87563 1.21130 0.97674 1.03014 0.91605 1.21387 0.99206 1.08465 0.85098 1.23940 0.84707 0.71270 0.87570 1.90767 1.20007 1.46100 1.88600 1.84498 1.47408 1.82633 1.17961 1.23505 0.99229 0.79570 0.99079 1.89626 1.30690 1.25684 1.86805 1.23884 0.87835 0.94664 0.97357 0.92915 0.94056 0.93550 0.85029 0.83845 0.92107 0.92879 0.84388 0.83828 0.71292 0.92357 0.90934 0.89656 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.02 12.09 21.45 0.26 -49.76 16 2 C 0.03 1.29 5.36 84.65 0.45 1.74 16 3 Si 0.95 40.58 29.54 68.60 2.03 42.61 16 4 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 5 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.51 -25.70 8.01 25.60 0.21 -25.50 16 8 H 0.07 3.35 7.82 -2.91 -0.02 3.33 16 9 C 0.01 0.36 0.76 -52.65 -0.04 0.32 16 10 C 0.12 5.72 4.83 71.98 0.35 6.07 16 11 O -0.34 -14.46 9.79 -51.36 -0.50 -14.97 16 12 C 0.44 16.40 7.96 71.24 0.57 16.96 16 13 O -0.56 -25.02 15.73 21.97 0.35 -24.67 16 14 C -0.10 -2.21 5.81 29.85 0.17 -2.04 16 15 C -0.10 -2.14 3.79 30.59 0.12 -2.02 16 16 C -0.10 -1.34 5.81 29.85 0.17 -1.17 16 17 C 0.48 8.73 8.33 71.24 0.59 9.33 16 18 O -0.56 -15.88 16.74 21.96 0.37 -15.51 16 19 O -0.51 -6.16 13.42 -51.32 -0.69 -6.85 16 20 C 0.06 2.98 7.19 63.84 0.46 3.44 16 21 O -0.41 -18.39 12.57 -148.98 -1.87 -20.26 16 22 C 0.04 1.60 7.89 63.87 0.50 2.11 16 23 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 24 H 0.04 1.95 7.96 -2.39 -0.02 1.93 16 25 H 0.05 2.52 7.58 -2.38 -0.02 2.50 16 26 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.06 1.59 8.06 -2.39 -0.02 1.58 16 29 H 0.05 1.48 8.06 -2.39 -0.02 1.46 16 30 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.43 2.05 9.10 -74.05 -0.67 1.38 16 33 H 0.06 2.87 8.13 -2.38 -0.02 2.85 16 34 H 0.07 3.42 8.10 -2.39 -0.02 3.40 16 35 H 0.09 3.26 8.10 -2.39 -0.02 3.24 16 36 H 0.08 3.05 8.13 -2.39 -0.02 3.03 16 Total: -1.00 -72.33 318.86 3.91 -68.42 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.42 Total: 11.74 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 3.55 Total: 9.25 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.26 Total: -49.76 kcal Atomic # 8 Polarization: -79.91 SS G_CDS: -2.35 Total: -82.26 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -72.33 3.91 -68.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605717.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.341 kcal (2) G-P(sol) polarization free energy of solvation -72.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds