Wall clock time and date at job start Mon Mar 30 2020 01:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28447 * 125.18967 * 2 1 4 4 C 1.30867 * 110.93265 * 180.02562 * 3 2 1 5 5 C 1.39662 * 107.86656 * 359.76113 * 4 3 2 6 6 C 1.36613 * 125.19008 * 180.02562 * 2 1 3 7 7 C 1.47100 * 126.89077 * 359.95636 * 6 2 1 8 8 O 1.21633 * 120.00143 * 354.83570 * 7 6 2 9 9 N 1.34774 * 120.00039 * 175.10982 * 7 6 2 10 10 C 1.39161 * 120.00001 * 185.82341 * 9 7 6 11 11 C 1.39697 * 119.57806 * 337.22914 * 10 9 7 12 12 C 1.38647 * 119.49525 * 179.76889 * 11 10 9 13 13 C 1.38355 * 118.66881 * 0.49234 * 12 11 10 14 14 C 1.40578 * 119.13397 * 359.75168 * 13 12 11 15 15 C 1.41334 * 119.78453 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99823 * 359.97438 * 15 14 13 17 17 C 1.40027 * 120.00132 * 179.97438 * 15 14 13 18 18 N 1.30747 * 119.99838 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00093 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47063 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47136 * 120.00037 * 19 17 15 22 22 H 1.48500 * 109.47148 * 239.99891 * 19 17 15 23 23 N 1.31922 * 119.57475 * 157.49782 * 10 9 7 24 24 H 1.08997 * 109.47424 * 272.85206 * 1 2 3 25 25 H 1.08999 * 109.47085 * 32.85206 * 1 2 3 26 26 H 1.09005 * 109.46826 * 152.85097 * 1 2 3 27 27 H 1.07995 * 126.06640 * 180.02562 * 4 3 2 28 28 H 1.08000 * 127.32381 * 180.28886 * 5 4 3 29 29 H 0.97000 * 120.00404 * 5.83319 * 9 7 6 30 30 H 1.08004 * 120.25362 * 0.02562 * 11 10 9 31 31 H 1.08004 * 120.66688 * 180.22681 * 12 11 10 32 32 H 1.08001 * 120.42880 * 179.77439 * 13 12 11 33 33 H 0.96995 * 119.99608 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4736 0.7274 -0.0005 5 6 3.5615 -0.6664 0.0046 6 6 2.2523 -1.1165 -0.0005 7 6 1.7997 -2.5161 -0.0002 8 8 0.6144 -2.7720 0.0953 9 7 2.6988 -3.5151 -0.1003 10 6 2.2653 -4.8318 -0.2221 11 6 0.9889 -5.1817 0.2250 12 6 0.5569 -6.4930 0.0984 13 6 1.4142 -7.4232 -0.4619 14 6 2.6885 -7.0099 -0.8880 15 6 3.5752 -7.9485 -1.4629 16 1 3.2731 -8.9795 -1.5731 17 6 4.8454 -7.5417 -1.8893 18 7 5.2113 -6.2936 -1.7554 19 14 6.0170 -8.7820 -2.6497 20 1 5.3682 -10.1173 -2.6873 21 1 6.3585 -8.3580 -4.0313 22 1 7.2560 -8.8570 -1.8345 23 7 3.0669 -5.7348 -0.7536 24 1 -0.3634 0.0511 1.0263 25 1 -0.3633 0.8633 -0.5575 26 1 -0.3633 -0.9145 -0.4690 27 1 4.3048 1.4169 -0.0003 28 1 4.4599 -1.2658 0.0100 29 1 3.6482 -3.3164 -0.0873 30 1 0.3420 -4.4355 0.6623 31 1 -0.4276 -6.7836 0.4344 32 1 1.1083 -8.4532 -0.5709 33 1 6.0910 -6.0118 -2.0511 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598032571.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:04 Heat of formation + Delta-G solvation = 95.463080 kcal Electronic energy + Delta-G solvation = -19905.045030 eV Core-core repulsion = 16740.367554 eV Total energy + Delta-G solvation = -3164.677476 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.48269 -39.70504 -37.70327 -34.59031 -33.48005 -33.09354 -31.10317 -30.45669 -29.02815 -27.09974 -25.62485 -23.72583 -21.95249 -21.67633 -20.72269 -19.71103 -18.07682 -17.51095 -16.26973 -16.17819 -15.93147 -14.97335 -14.71753 -14.57790 -14.37492 -13.86832 -13.52596 -13.42957 -12.92309 -12.82765 -12.40577 -12.30241 -12.05359 -11.30412 -11.19172 -10.97640 -10.81879 -10.70564 -10.13590 -9.96956 -9.33278 -9.19365 -9.11448 -9.00476 -8.11175 -7.76443 -7.22610 -6.46963 -4.56485 1.28035 2.40343 2.55109 2.71379 2.90872 3.07017 3.11173 3.18663 3.41150 3.58274 3.91600 4.54009 4.70223 4.76153 5.12040 5.14038 5.26581 5.51670 5.63802 5.76814 5.83700 6.09901 6.31363 6.47641 6.66705 6.68670 6.73149 6.78009 7.09008 7.36776 7.41891 7.73744 7.82087 8.03239 8.03943 8.21928 8.47873 8.64351 8.89180 9.96166 10.25894 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.024373 B = 0.004874 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.516784 B = 5743.311280 C = 6789.713575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.259 5.259 3 N -0.284 5.284 4 C -0.005 4.005 5 C -0.188 4.188 6 C -0.029 4.029 7 C 0.590 3.410 8 O -0.523 6.523 9 N -0.625 5.625 10 C 0.353 3.647 11 C -0.313 4.313 12 C -0.051 4.051 13 C -0.284 4.284 14 C 0.277 3.723 15 C -0.433 4.433 16 H 0.086 0.914 17 C 0.071 3.929 18 N -0.721 5.721 19 Si 0.908 3.092 20 H -0.260 1.260 21 H -0.273 1.273 22 H -0.273 1.273 23 N -0.503 5.503 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.113 0.887 27 H 0.186 0.814 28 H 0.164 0.836 29 H 0.411 0.589 30 H 0.136 0.864 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.527 9.643 2.267 10.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.047 5.047 3 N -0.117 5.117 4 C -0.180 4.180 5 C -0.217 4.217 6 C -0.158 4.158 7 C 0.375 3.625 8 O -0.400 6.400 9 N -0.269 5.269 10 C 0.119 3.881 11 C -0.337 4.337 12 C -0.076 4.076 13 C -0.307 4.307 14 C 0.151 3.849 15 C -0.465 4.465 16 H 0.105 0.895 17 C -0.154 4.154 18 N -0.343 5.343 19 Si 0.732 3.268 20 H -0.184 1.184 21 H -0.199 1.199 22 H -0.198 1.198 23 N -0.222 5.222 24 H 0.102 0.898 25 H 0.109 0.891 26 H 0.131 0.869 27 H 0.203 0.797 28 H 0.181 0.819 29 H 0.247 0.753 30 H 0.154 0.846 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.256 10.774 1.992 11.187 hybrid contribution 0.847 -1.283 -0.115 1.541 sum -1.410 9.491 1.877 9.777 Atomic orbital electron populations 1.22365 0.72541 1.06023 1.04635 1.45584 1.07879 1.01652 1.49535 1.73178 1.04441 1.13701 1.20346 1.23538 0.93411 0.94964 1.06108 1.22355 0.95814 0.95633 1.07890 1.21403 0.91524 0.89586 1.13305 1.16756 0.85660 0.82761 0.77324 1.90668 1.16450 1.83390 1.49499 1.42743 1.10226 1.04785 1.69164 1.18412 0.91017 0.83948 0.94717 1.21775 0.98627 0.97695 1.15633 1.20837 0.97388 0.93033 0.96300 1.21754 0.97374 0.98936 1.12586 1.18186 0.89681 0.87864 0.89180 1.19620 0.97344 0.95834 1.33710 0.89549 1.26045 0.98885 0.95666 0.94807 1.70113 1.18058 1.15875 1.30274 0.86271 0.80010 0.81414 0.79125 1.18393 1.19875 1.19845 1.68036 1.33354 1.01625 1.19146 0.89759 0.89128 0.86891 0.79664 0.81881 0.75290 0.84637 0.88211 0.88116 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 10.85 59.85 0.65 1.62 16 2 N -0.26 -3.75 3.75 -63.89 -0.24 -3.99 16 3 N -0.28 -4.00 11.90 30.59 0.36 -3.64 16 4 C 0.00 -0.06 12.03 -17.43 -0.21 -0.27 16 5 C -0.19 -2.50 10.51 -38.97 -0.41 -2.91 16 6 C -0.03 -0.46 6.96 -82.07 -0.57 -1.03 16 7 C 0.59 10.91 7.68 -12.67 -0.10 10.82 16 8 O -0.52 -10.53 11.39 5.25 0.06 -10.47 16 9 N -0.63 -12.51 5.40 -12.47 -0.07 -12.58 16 10 C 0.35 8.57 7.49 -155.06 -1.16 7.41 16 11 C -0.31 -7.42 8.89 -38.89 -0.35 -7.77 16 12 C -0.05 -1.17 10.15 -39.39 -0.40 -1.57 16 13 C -0.28 -6.96 9.83 -38.66 -0.38 -7.34 16 14 C 0.28 7.48 6.55 -85.00 -0.56 6.93 16 15 C -0.43 -11.33 9.14 -37.74 -0.34 -11.68 16 16 H 0.09 2.12 7.85 -52.48 -0.41 1.71 16 17 C 0.07 1.75 5.50 -17.34 -0.10 1.65 16 18 N -0.72 -18.37 11.46 55.55 0.64 -17.74 16 19 Si 0.91 18.10 29.56 -169.99 -5.02 13.08 16 20 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 23 N -0.50 -13.46 7.89 -10.27 -0.08 -13.54 16 24 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.11 1.43 6.27 -51.93 -0.33 1.10 16 27 H 0.19 1.59 8.06 -52.49 -0.42 1.17 16 28 H 0.16 1.81 7.58 -52.49 -0.40 1.41 16 29 H 0.41 7.38 7.86 -40.82 -0.32 7.06 16 30 H 0.14 3.13 5.22 -52.72 -0.27 2.86 16 31 H 0.10 1.97 8.06 -52.48 -0.42 1.55 16 32 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 33 H 0.27 6.22 8.29 -40.82 -0.34 5.88 16 LS Contribution 291.76 15.07 4.40 4.40 Total: -1.00 -31.04 291.76 -6.86 -37.90 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -2.98 Total: 10.73 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -3.92 Total: -4.14 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: 0.61 Total: -51.49 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.06 Total: -10.47 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.02 Total: 13.08 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.04 -6.86 -37.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598032571.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.359 kcal (2) G-P(sol) polarization free energy of solvation -31.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds