Wall clock time and date at job start Mon Mar 30 2020 01:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 110.90738 * 2 1 4 4 C 1.55306 * 110.84690 * 236.41051 * 2 1 3 5 5 C 1.54949 * 100.94002 * 207.67600 * 4 2 1 6 6 H 1.09000 * 110.30764 * 277.43226 * 5 4 2 7 7 C 1.50699 * 110.30812 * 155.36538 * 5 4 2 8 8 O 1.20825 * 119.99862 * 245.00348 * 7 5 4 9 9 O 1.34229 * 120.00094 * 64.99513 * 7 5 4 10 10 C 1.45199 * 117.00070 * 179.97438 * 9 7 5 11 11 C 1.52996 * 109.47330 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47159 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 O 1.43638 * 105.13749 * 36.45079 * 5 4 2 21 21 C 1.43242 * 109.97198 * 335.56870 * 20 5 4 22 22 H 1.08999 * 109.83035 * 121.22243 * 21 20 5 23 23 C 1.50696 * 109.90682 * 242.15844 * 21 20 5 24 24 O 1.20831 * 120.00144 * 3.17914 * 23 21 20 25 25 O 1.34228 * 120.00107 * 183.17463 * 23 21 20 26 26 H 1.09009 * 109.47327 * 183.58555 * 1 2 3 27 27 H 1.08996 * 109.47457 * 303.58393 * 1 2 3 28 28 H 1.08997 * 109.47348 * 63.58819 * 1 2 3 29 29 H 1.09003 * 111.11977 * 89.76129 * 4 2 1 30 30 H 1.09001 * 111.12726 * 325.59684 * 4 2 1 31 31 H 1.09004 * 109.46786 * 60.00344 * 10 9 7 32 32 H 1.09000 * 109.47637 * 300.00777 * 10 9 7 33 33 H 1.09004 * 109.47066 * 60.00318 * 11 10 9 34 34 H 1.08994 * 109.47405 * 300.00148 * 11 10 9 35 35 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 36 36 H 0.96698 * 117.00216 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9189 1.0181 0.0000 4 6 2.0827 -0.8030 -1.2090 5 6 3.4464 -1.2784 -0.6476 6 1 4.1939 -0.4922 -0.7535 7 6 3.8981 -2.5276 -1.3592 8 8 3.9949 -3.5675 -0.7516 9 8 4.1928 -2.4852 -2.6681 10 6 4.6219 -3.7262 -3.2878 11 6 4.9114 -3.4826 -4.7702 12 6 5.3561 -4.7709 -5.4135 13 1 5.4249 -5.6732 -4.8240 14 6 5.6692 -4.7989 -6.7560 15 7 5.5850 -3.7002 -7.4739 16 14 6.2130 -6.3973 -7.5550 17 1 6.2248 -7.4799 -6.5386 18 1 5.2686 -6.7524 -8.6447 19 1 7.5774 -6.2307 -8.1172 20 8 3.2044 -1.5554 0.7409 21 6 2.0794 -0.7981 1.2020 22 1 1.3107 -1.4715 1.5811 23 6 2.5107 0.1501 2.2910 24 8 3.6757 0.2216 2.6034 25 8 1.6006 0.9153 2.9138 26 1 -0.3634 -1.0257 0.0643 27 1 -0.3634 0.5684 0.8561 28 1 -0.3634 0.4571 -0.9204 29 1 2.2185 -0.1598 -2.0786 30 1 1.4385 -1.6498 -1.4458 31 1 3.8339 -4.4730 -3.1890 32 1 5.5259 -4.0847 -2.7955 33 1 5.6995 -2.7360 -4.8686 34 1 4.0077 -3.1240 -5.2628 35 1 5.8056 -3.7198 -8.4183 36 1 1.9249 1.5077 3.6059 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599879618.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:18 Heat of formation + Delta-G solvation = -232.298567 kcal Electronic energy + Delta-G solvation = -20804.845184 eV Core-core repulsion = 17254.060474 eV Total energy + Delta-G solvation = -3550.784710 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.25159 -40.09800 -38.92796 -36.42232 -36.09784 -34.08477 -33.38469 -31.37770 -30.10543 -27.68231 -25.71959 -24.45678 -22.10015 -21.57935 -20.94018 -20.24872 -18.72588 -17.77889 -17.40739 -16.57989 -16.43499 -16.15824 -15.87390 -15.72712 -14.94130 -14.53467 -14.29943 -13.84921 -13.49015 -13.25182 -13.02826 -12.72821 -12.38780 -12.25745 -11.91384 -11.85242 -11.58130 -11.32250 -11.25748 -11.06509 -10.99653 -10.79197 -10.68634 -10.29111 -9.97885 -9.69042 -9.60099 -9.30031 -8.46937 -6.12904 -4.17136 1.81814 2.19500 2.44405 2.86526 3.26461 3.33988 3.38944 3.59471 3.90019 4.31087 4.35663 4.38823 4.59208 4.82270 4.83147 4.94930 5.12177 5.17962 5.24005 5.34777 5.46128 5.55333 5.67348 5.81193 6.04210 6.05995 6.11500 6.31445 6.59810 6.90102 7.52861 7.54917 7.58771 7.84105 8.13262 8.22234 8.88567 9.47512 10.98608 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.043802 B = 0.003163 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.080319 B = 8850.071960 C = 9140.268851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 H 0.096 0.904 4 C -0.138 4.138 5 C 0.086 3.914 6 H 0.115 0.885 7 C 0.456 3.544 8 O -0.495 6.495 9 O -0.352 6.352 10 C 0.076 3.924 11 C 0.025 3.975 12 C -0.526 4.526 13 H 0.060 0.940 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.900 3.100 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 O -0.321 6.321 21 C 0.093 3.907 22 H 0.127 0.873 23 C 0.465 3.535 24 O -0.495 6.495 25 O -0.513 6.513 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.263 0.737 36 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.956 11.637 16.341 23.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 H 0.115 0.885 4 C -0.175 4.175 5 C 0.027 3.973 6 H 0.132 0.868 7 C 0.297 3.703 8 O -0.383 6.383 9 O -0.269 6.269 10 C 0.003 3.997 11 C -0.012 4.012 12 C -0.564 4.564 13 H 0.078 0.922 14 C -0.142 4.142 15 N -0.528 5.528 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 O -0.239 6.239 21 C 0.034 3.966 22 H 0.144 0.856 23 C 0.306 3.694 24 O -0.380 6.380 25 O -0.326 6.326 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.128 0.872 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -11.564 10.964 16.208 22.729 hybrid contribution 0.630 -0.443 -0.013 0.770 sum -10.934 10.521 16.195 22.193 Atomic orbital electron populations 1.21761 0.91880 1.03119 1.03274 1.22688 0.98501 0.99908 0.91812 0.88542 1.23383 0.93920 1.01461 0.98746 1.22466 0.99534 0.93837 0.81433 0.86755 1.22990 0.75334 0.89739 0.82212 1.90665 1.47972 1.32340 1.67301 1.86493 1.76530 1.41807 1.22078 1.23716 0.98550 0.81198 0.96206 1.19182 0.98234 0.98283 0.85521 1.21019 1.46219 0.94772 0.94428 0.92168 1.24984 0.95274 0.96733 0.97166 1.69983 1.48234 1.27029 1.07587 0.86411 0.78326 0.83232 0.79332 1.19565 1.20823 1.20811 1.88654 1.48412 1.63669 1.23172 1.22380 0.89470 0.92343 0.92450 0.85553 1.23814 0.83962 0.79489 0.82161 1.90769 1.19718 1.64732 1.62813 1.84492 1.43412 1.52891 1.51836 0.91650 0.91202 0.91110 0.87175 0.88718 0.92152 0.92135 0.95273 0.95283 0.92748 0.72897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.17 37.16 0.34 -0.45 16 2 C -0.11 -0.83 3.11 -88.67 -0.28 -1.11 16 3 H 0.10 0.64 7.84 -51.93 -0.41 0.24 16 4 C -0.14 -1.31 6.02 -24.48 -0.15 -1.46 16 5 C 0.09 1.15 3.97 -26.85 -0.11 1.04 16 6 H 0.11 1.36 8.14 -51.93 -0.42 0.93 16 7 C 0.46 8.17 7.30 36.01 0.26 8.43 16 8 O -0.50 -10.47 16.30 -25.32 -0.41 -10.88 16 9 O -0.35 -6.87 10.22 -39.26 -0.40 -7.28 16 10 C 0.08 1.67 5.40 37.16 0.20 1.87 16 11 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 12 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 16 13 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 16 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 O -0.32 -4.64 9.82 -64.46 -0.63 -5.27 16 21 C 0.09 0.93 3.66 -27.16 -0.10 0.83 16 22 H 0.13 1.03 7.75 -51.93 -0.40 0.62 16 23 C 0.47 4.78 7.52 36.00 0.27 5.05 16 24 O -0.49 -7.12 17.28 -25.40 -0.44 -7.56 16 25 O -0.51 -3.31 13.42 -39.25 -0.53 -3.84 16 26 H 0.06 0.36 8.06 -51.92 -0.42 -0.06 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.09 0.92 7.95 -51.93 -0.41 0.51 16 31 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 32 H 0.06 1.34 8.13 -51.93 -0.42 0.92 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 36 H 0.41 1.03 9.10 45.56 0.41 1.44 16 LS Contribution 319.14 15.07 4.81 4.81 Total: -1.00 -35.31 319.14 -6.15 -41.46 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -4.15 Total: -3.65 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -0.11 Total: 1.28 kcal Atomic # 7 Polarization: -26.10 SS G_CDS: 0.74 Total: -25.36 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -2.41 Total: -34.82 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.31 -6.15 -41.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599879618.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.836 kcal (2) G-P(sol) polarization free energy of solvation -35.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds