Wall clock time and date at job start Mon Mar 30 2020 01:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 110.90738 * 2 1 4 4 C 1.55306 * 110.84690 * 236.41051 * 2 1 3 5 5 C 1.54949 * 100.94002 * 207.67600 * 4 2 1 6 6 H 1.09000 * 110.30764 * 277.43226 * 5 4 2 7 7 C 1.50699 * 110.30812 * 155.36538 * 5 4 2 8 8 O 1.20825 * 119.99862 * 245.00348 * 7 5 4 9 9 O 1.34229 * 120.00094 * 64.99513 * 7 5 4 10 10 C 1.45199 * 117.00070 * 179.97438 * 9 7 5 11 11 C 1.52996 * 109.47330 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47159 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 O 1.43638 * 105.13749 * 36.45079 * 5 4 2 21 21 C 1.43242 * 109.97198 * 335.56870 * 20 5 4 22 22 H 1.08999 * 109.83035 * 121.22243 * 21 20 5 23 23 C 1.50696 * 109.90682 * 242.15844 * 21 20 5 24 24 O 1.20831 * 120.00144 * 3.17914 * 23 21 20 25 25 O 1.34228 * 120.00107 * 183.17463 * 23 21 20 26 26 H 1.09009 * 109.47327 * 183.58555 * 1 2 3 27 27 H 1.08996 * 109.47457 * 303.58393 * 1 2 3 28 28 H 1.08997 * 109.47348 * 63.58819 * 1 2 3 29 29 H 1.09003 * 111.11977 * 89.76129 * 4 2 1 30 30 H 1.09001 * 111.12726 * 325.59684 * 4 2 1 31 31 H 1.09004 * 109.46786 * 60.00344 * 10 9 7 32 32 H 1.09000 * 109.47637 * 300.00777 * 10 9 7 33 33 H 1.09004 * 109.47066 * 60.00318 * 11 10 9 34 34 H 1.08994 * 109.47405 * 300.00148 * 11 10 9 35 35 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 36 36 H 0.96698 * 117.00216 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9189 1.0181 0.0000 4 6 2.0827 -0.8030 -1.2090 5 6 3.4464 -1.2784 -0.6476 6 1 4.1939 -0.4922 -0.7535 7 6 3.8981 -2.5276 -1.3592 8 8 3.9949 -3.5675 -0.7516 9 8 4.1928 -2.4852 -2.6681 10 6 4.6219 -3.7262 -3.2878 11 6 4.9114 -3.4826 -4.7702 12 6 5.3561 -4.7709 -5.4135 13 1 5.4249 -5.6732 -4.8240 14 6 5.6692 -4.7989 -6.7560 15 7 5.5850 -3.7002 -7.4739 16 14 6.2130 -6.3973 -7.5550 17 1 6.2248 -7.4799 -6.5386 18 1 5.2686 -6.7524 -8.6447 19 1 7.5774 -6.2307 -8.1172 20 8 3.2044 -1.5554 0.7409 21 6 2.0794 -0.7981 1.2020 22 1 1.3107 -1.4715 1.5811 23 6 2.5107 0.1501 2.2910 24 8 3.6757 0.2216 2.6034 25 8 1.6006 0.9153 2.9138 26 1 -0.3634 -1.0257 0.0643 27 1 -0.3634 0.5684 0.8561 28 1 -0.3634 0.4571 -0.9204 29 1 2.2185 -0.1598 -2.0786 30 1 1.4385 -1.6498 -1.4458 31 1 3.8339 -4.4730 -3.1890 32 1 5.5259 -4.0847 -2.7955 33 1 5.6995 -2.7360 -4.8686 34 1 4.0077 -3.1240 -5.2628 35 1 5.8056 -3.7198 -8.4183 36 1 1.9249 1.5077 3.6059 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599879618.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:17 Heat of formation + Delta-G solvation = -256.017548 kcal Electronic energy + Delta-G solvation = -20805.873716 eV Core-core repulsion = 17254.060474 eV Total energy + Delta-G solvation = -3551.813242 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.20978 -41.33797 -39.95365 -37.70707 -37.15698 -35.47213 -34.82835 -32.73013 -31.74292 -28.35090 -27.33256 -25.84896 -23.24323 -22.72767 -22.29484 -21.38970 -19.56328 -19.05325 -18.41492 -18.18284 -17.75660 -17.63190 -17.05684 -16.78277 -16.50354 -15.87616 -15.33818 -14.85512 -14.64193 -14.40310 -14.30868 -14.02397 -13.43775 -13.38391 -13.15129 -12.97908 -12.66325 -12.63268 -12.60203 -12.55176 -12.25060 -11.95502 -11.89148 -11.75439 -11.52605 -11.48817 -11.28726 -10.91072 -10.61732 -8.27570 -6.40283 0.98823 1.05127 1.17240 1.41630 1.42404 1.55883 1.89548 2.39021 2.68715 3.07119 3.10889 3.45388 3.56714 3.80903 3.89020 3.99211 4.19701 4.22550 4.23156 4.40159 4.47661 4.66957 4.74772 4.85922 5.03759 5.12193 5.19812 5.39568 5.41523 5.46539 5.47727 5.56359 5.73187 6.06257 6.62460 6.73338 6.92184 7.29419 8.85076 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.043802 B = 0.003163 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.080319 B = 8850.071960 C = 9140.268851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 H 0.110 0.890 4 C -0.133 4.133 5 C 0.088 3.912 6 H 0.131 0.869 7 C 0.456 3.544 8 O -0.532 6.532 9 O -0.353 6.353 10 C 0.090 3.910 11 C 0.032 3.968 12 C -0.551 4.551 13 H 0.063 0.937 14 C 0.008 3.992 15 N -0.925 5.925 16 Si 0.972 3.028 17 H -0.264 1.264 18 H -0.274 1.274 19 H -0.276 1.276 20 O -0.355 6.355 21 C 0.082 3.918 22 H 0.145 0.855 23 C 0.476 3.524 24 O -0.544 6.544 25 O -0.496 6.496 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.128 0.872 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.008 0.992 34 H 0.013 0.987 35 H 0.268 0.732 36 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.271 12.121 16.663 24.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 H 0.128 0.872 4 C -0.170 4.170 5 C 0.030 3.970 6 H 0.148 0.852 7 C 0.299 3.701 8 O -0.421 6.421 9 O -0.269 6.269 10 C 0.017 3.983 11 C -0.005 4.005 12 C -0.589 4.589 13 H 0.081 0.919 14 C -0.191 4.191 15 N -0.564 5.564 16 Si 0.796 3.204 17 H -0.188 1.188 18 H -0.199 1.199 19 H -0.201 1.201 20 O -0.274 6.274 21 C 0.024 3.976 22 H 0.162 0.838 23 C 0.319 3.681 24 O -0.434 6.434 25 O -0.310 6.310 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.146 0.854 30 H 0.111 0.889 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.026 0.974 34 H 0.031 0.969 35 H 0.077 0.923 36 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -12.918 11.484 16.559 23.937 hybrid contribution 0.973 -0.513 -0.015 1.099 sum -11.946 10.971 16.544 23.168 Atomic orbital electron populations 1.21777 0.89971 1.03572 1.04373 1.22692 0.99820 0.99677 0.89214 0.87196 1.23465 0.91517 1.01940 1.00124 1.22628 1.02016 0.91106 0.81284 0.85213 1.24000 0.73883 0.91042 0.81175 1.90641 1.49608 1.34189 1.67654 1.86480 1.76720 1.40253 1.23466 1.23243 0.98560 0.82253 0.94293 1.18981 0.96593 0.97110 0.87798 1.21397 1.46702 0.95564 0.95192 0.91896 1.25925 0.95035 1.00445 0.97720 1.70089 1.48866 1.29285 1.08142 0.85293 0.78052 0.78718 0.78342 1.18819 1.19913 1.20122 1.88611 1.50235 1.65094 1.23442 1.22726 0.88569 0.92905 0.93445 0.83784 1.23803 0.83394 0.79153 0.81772 1.90760 1.21749 1.66417 1.64433 1.84442 1.42040 1.52494 1.52058 0.91590 0.90051 0.90041 0.85411 0.88940 0.91912 0.92528 0.97373 0.96898 0.92292 0.70597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.17 71.98 0.66 -0.43 16 2 C -0.10 -1.18 3.11 -9.53 -0.03 -1.21 16 3 H 0.11 1.10 7.84 -2.39 -0.02 1.08 16 4 C -0.13 -2.28 6.02 32.05 0.19 -2.09 16 5 C 0.09 2.28 3.97 30.51 0.12 2.41 16 6 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 7 C 0.46 16.41 7.30 71.24 0.52 16.93 16 8 O -0.53 -22.87 16.30 28.25 0.46 -22.41 16 9 O -0.35 -13.89 10.22 -51.41 -0.53 -14.42 16 10 C 0.09 4.03 5.40 71.98 0.39 4.42 16 11 C 0.03 1.71 5.35 29.85 0.16 1.87 16 12 C -0.55 -31.10 9.11 25.60 0.23 -30.87 16 13 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 14 C 0.01 0.45 5.46 84.66 0.46 0.91 16 15 N -0.92 -54.65 13.29 21.45 0.28 -54.37 16 16 Si 0.97 43.44 29.54 68.60 2.03 45.47 16 17 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 20 O -0.36 -10.11 9.82 -121.03 -1.19 -11.30 16 21 C 0.08 1.50 3.66 30.32 0.11 1.61 16 22 H 0.15 2.05 7.75 -2.39 -0.02 2.03 16 23 C 0.48 9.01 7.52 71.23 0.54 9.54 16 24 O -0.54 -15.42 17.28 28.30 0.49 -14.93 16 25 O -0.50 -5.03 13.42 -51.40 -0.69 -5.72 16 26 H 0.07 0.53 8.06 -2.38 -0.02 0.51 16 27 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.09 1.65 7.95 -2.39 -0.02 1.63 16 31 H 0.06 2.78 8.13 -2.38 -0.02 2.76 16 32 H 0.06 2.57 8.13 -2.39 -0.02 2.55 16 33 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 34 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.27 14.73 8.31 -92.70 -0.77 13.96 16 36 H 0.43 0.98 9.10 -74.06 -0.67 0.31 16 Total: -1.00 -77.26 319.14 4.64 -72.63 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: 0.42 Total: 1.93 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 3.36 Total: 3.10 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: 0.28 Total: -54.37 kcal Atomic # 8 Polarization: -67.31 SS G_CDS: -1.45 Total: -68.77 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -77.26 4.64 -72.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599879618.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.390 kcal (2) G-P(sol) polarization free energy of solvation -77.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -260.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -256.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds