Wall clock time and date at job start Mon Mar 30 2020 00:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99735 * 2 1 4 4 H 1.48497 * 109.46854 * 269.99496 * 3 2 1 5 5 H 1.48498 * 109.47445 * 29.99898 * 3 2 1 6 6 H 1.48507 * 109.47073 * 149.99902 * 3 2 1 7 7 C 1.38805 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99868 * 179.59910 * 7 2 1 9 9 N 1.36933 * 120.00612 * 359.60463 * 7 2 1 10 10 C 1.46510 * 119.99753 * 344.94730 * 9 7 2 11 11 C 1.50696 * 109.46632 * 84.72790 * 10 9 7 12 12 O 1.20821 * 120.00405 * 5.56179 * 11 10 9 13 13 O 1.34232 * 119.99522 * 185.55335 * 11 10 9 14 14 C 1.46504 * 120.00509 * 164.95354 * 9 7 2 15 15 C 1.50692 * 109.47285 * 91.68288 * 14 9 7 16 16 N 1.30833 * 125.96134 * 84.20863 * 15 14 9 17 17 C 1.33246 * 109.82757 * 180.12109 * 16 15 14 18 18 N 1.30709 * 108.94403 * 359.59104 * 17 16 15 19 19 N 1.34435 * 125.96140 * 263.87644 * 15 14 9 20 20 C 1.46501 * 126.82203 * 0.02562 * 19 15 14 21 21 C 1.52999 * 109.46990 * 264.94008 * 20 19 15 22 22 F 1.39899 * 109.46740 * 184.95400 * 21 20 19 23 23 H 0.97002 * 119.99988 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.46982 * 204.73321 * 10 9 7 25 25 H 1.08998 * 109.46664 * 324.72985 * 10 9 7 26 26 H 0.96705 * 116.99915 * 180.02562 * 13 11 10 27 27 H 1.09003 * 109.46354 * 331.68053 * 14 9 7 28 28 H 1.09001 * 109.46500 * 211.68980 * 14 9 7 29 29 H 1.07994 * 125.52637 * 179.85804 * 17 16 15 30 30 H 1.09003 * 109.47202 * 24.93916 * 20 19 15 31 31 H 1.08994 * 109.46788 * 144.93657 * 20 19 15 32 32 H 1.09001 * 109.47409 * 304.95166 * 21 20 19 33 33 H 1.09004 * 109.47315 * 64.95474 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 -0.0060 9 7 1.3256 -2.3880 0.0093 10 6 -0.0998 -2.4085 0.3474 11 6 -0.9127 -2.1076 -0.8853 12 8 -0.3664 -1.9971 -1.9572 13 8 -2.2440 -1.9626 -0.7924 14 6 2.0184 -3.6363 -0.3194 15 6 2.5480 -4.2646 0.9438 16 7 1.8749 -5.0351 1.7593 17 6 2.6537 -5.4092 2.7737 18 7 3.8408 -4.8865 2.6125 19 7 3.7962 -4.1361 1.4262 20 6 4.8922 -3.3664 0.8323 21 6 5.7579 -4.2908 -0.0261 22 9 6.8667 -3.5826 -0.5016 23 1 -0.4850 0.8401 -0.0004 24 1 -0.3686 -3.3936 0.7286 25 1 -0.3032 -1.6561 1.1094 26 1 -2.7228 -1.7707 -1.6103 27 1 2.8472 -3.4248 -0.9951 28 1 1.3220 -4.3220 -0.8021 29 1 2.3540 -6.0449 3.5937 30 1 4.4820 -2.5711 0.2098 31 1 5.5008 -2.9304 1.6244 32 1 6.0963 -5.1342 0.5758 33 1 5.1724 -4.6578 -0.8691 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071866.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:47 Heat of formation + Delta-G solvation = -40.447608 kcal Electronic energy + Delta-G solvation = -21575.437606 eV Core-core repulsion = 17974.097376 eV Total energy + Delta-G solvation = -3601.340231 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.107 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.76991 -42.97310 -40.46121 -37.71479 -36.18995 -35.68153 -33.88946 -32.05021 -30.51986 -29.41101 -27.94137 -24.96964 -24.40986 -22.68114 -22.07114 -21.18729 -18.86320 -18.45101 -18.28899 -17.42343 -17.31302 -16.96130 -16.79621 -16.29219 -15.90537 -15.73121 -15.46702 -15.25340 -14.89405 -14.78524 -14.16783 -13.54699 -13.38276 -12.97783 -12.92816 -12.82088 -12.65600 -12.29670 -12.14645 -12.03586 -11.85044 -11.79432 -11.16107 -10.92972 -10.66815 -10.64971 -10.46894 -9.21123 -7.98244 -5.43734 0.64758 1.30877 1.45916 1.48619 1.54336 2.02758 2.13633 2.45657 2.86647 3.20365 3.38075 3.45469 3.48797 3.58977 3.86112 3.92341 4.01525 4.20810 4.37666 4.64425 4.68479 4.77624 4.79782 5.26483 5.30195 5.38783 5.52541 5.60216 5.87192 6.12391 6.25971 6.93356 7.23281 7.57298 7.79182 8.01231 9.05994 Molecular weight = 272.11amu Principal moments of inertia in cm(-1) A = 0.015342 B = 0.007538 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.632021 B = 3713.640380 C = 4714.243154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.047 4.047 3 Si 0.976 3.024 4 H -0.293 1.293 5 H -0.296 1.296 6 H -0.264 1.264 7 C -0.250 4.250 8 H 0.092 0.908 9 N -0.571 5.571 10 C 0.198 3.802 11 C 0.498 3.502 12 O -0.574 6.574 13 O -0.533 6.533 14 C 0.217 3.783 15 C 0.279 3.721 16 N -0.565 5.565 17 C 0.195 3.805 18 N -0.350 5.350 19 N -0.373 5.373 20 C 0.094 3.906 21 C 0.062 3.938 22 F -0.214 7.214 23 H 0.253 0.747 24 H 0.073 0.927 25 H 0.098 0.902 26 H 0.399 0.601 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.247 0.753 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.533 -8.515 1.706 10.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.240 4.240 3 Si 0.805 3.195 4 H -0.220 1.220 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.379 4.379 8 H 0.110 0.890 9 N -0.291 5.291 10 C 0.070 3.930 11 C 0.341 3.659 12 O -0.465 6.465 13 O -0.344 6.344 14 C 0.087 3.913 15 C 0.000 4.000 16 N -0.294 5.294 17 C -0.107 4.107 18 N -0.178 5.178 19 N -0.164 5.164 20 C -0.029 4.029 21 C 0.006 3.994 22 F -0.195 7.195 23 H 0.063 0.937 24 H 0.091 0.909 25 H 0.116 0.884 26 H 0.256 0.744 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.263 0.737 30 H 0.129 0.871 31 H 0.126 0.874 32 H 0.109 0.891 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.186 -8.553 2.213 10.785 hybrid contribution -0.138 1.566 -0.735 1.735 sum 6.048 -6.988 1.478 9.359 Atomic orbital electron populations 1.69595 1.06175 1.25621 1.57006 1.25560 0.96408 1.01188 1.00875 0.85117 0.78026 0.79260 0.77089 1.22004 1.22278 1.18886 1.19672 0.91509 0.83532 1.43138 0.89008 1.43863 1.04592 1.02488 1.78129 1.20230 0.81346 1.00070 0.91337 1.24743 0.79397 0.69924 0.91807 1.90457 1.72192 1.51346 1.32515 1.84533 1.22761 1.84127 1.42933 1.19488 0.97674 0.87289 0.86880 1.26188 0.82281 0.92825 0.98718 1.70516 1.33933 1.18699 1.06230 1.26605 0.86864 0.98880 0.98372 1.77891 1.23946 1.14341 1.01593 1.50168 1.10499 1.37938 1.17780 1.22424 0.87639 0.93941 0.98871 1.22220 0.84413 0.93630 0.99138 1.92780 1.55357 1.81322 1.90030 0.93705 0.90933 0.88446 0.74380 0.89069 0.89389 0.73702 0.87104 0.87386 0.89125 0.88661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -50.24 7.95 21.65 0.17 -50.07 16 2 C -0.05 -2.41 5.35 84.86 0.45 -1.95 16 3 Si 0.98 42.67 29.55 68.60 2.03 44.70 16 4 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.30 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 7 C -0.25 -12.06 9.72 84.03 0.82 -11.24 16 8 H 0.09 4.08 6.19 -2.91 -0.02 4.07 16 9 N -0.57 -25.48 2.03 -710.68 -1.44 -26.92 16 10 C 0.20 9.06 5.60 85.63 0.48 9.54 16 11 C 0.50 23.46 5.88 71.23 0.42 23.88 16 12 O -0.57 -30.34 17.03 21.98 0.37 -29.97 16 13 O -0.53 -21.49 13.42 -51.44 -0.69 -22.18 16 14 C 0.22 7.82 5.84 85.63 0.50 8.32 16 15 C 0.28 9.58 7.57 138.22 1.05 10.63 16 16 N -0.57 -19.48 11.19 -191.78 -2.15 -21.63 16 17 C 0.20 5.73 13.03 180.76 2.36 8.09 16 18 N -0.35 -10.95 12.70 -61.25 -0.78 -11.73 16 19 N -0.37 -11.64 3.64 -338.49 -1.23 -12.87 16 20 C 0.09 2.44 6.64 86.38 0.57 3.01 16 21 C 0.06 1.30 7.88 71.98 0.57 1.87 16 22 F -0.21 -5.13 17.36 44.97 0.78 -4.35 16 23 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 24 H 0.07 3.00 8.03 -2.39 -0.02 2.98 16 25 H 0.10 4.97 6.34 -2.39 -0.02 4.95 16 26 H 0.40 12.64 9.10 -74.05 -0.67 11.96 16 27 H 0.09 2.96 7.25 -2.39 -0.02 2.95 16 28 H 0.09 3.07 8.08 -2.39 -0.02 3.05 16 29 H 0.25 4.90 8.06 -2.91 -0.02 4.88 16 30 H 0.11 3.06 5.70 -2.39 -0.01 3.05 16 31 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -65.77 295.20 4.77 -60.99 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.49 Total: 21.90 kcal Atomic # 6 Polarization: 44.92 SS G_CDS: 7.21 Total: 52.14 kcal Atomic # 7 Polarization: -117.80 SS G_CDS: -5.42 Total: -123.22 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -0.32 Total: -52.15 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.78 Total: -4.35 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -65.77 4.77 -60.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071866.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.547 kcal (2) G-P(sol) polarization free energy of solvation -65.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds