Wall clock time and date at job start Mon Mar 30 2020 01:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 O 1.45202 * 109.47203 * 239.99344 * 2 1 3 13 13 C 1.34237 * 116.99443 * 90.00402 * 12 2 1 14 14 O 1.20822 * 120.00184 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99347 * 180.02562 * 13 12 2 16 16 H 1.09003 * 110.27705 * 305.63171 * 15 13 12 17 17 C 1.54939 * 110.31308 * 67.83378 * 15 13 12 18 18 C 1.55304 * 100.94323 * 155.35628 * 17 15 13 19 19 H 1.09002 * 111.02440 * 84.13624 * 18 17 15 20 20 C 1.52998 * 110.84717 * 207.67417 * 18 17 15 21 21 C 1.54377 * 102.25446 * 325.86644 * 18 17 15 22 22 H 1.09001 * 109.83125 * 261.84181 * 21 18 17 23 23 C 1.50698 * 109.83240 * 140.86811 * 21 18 17 24 24 O 1.20825 * 120.00473 * 245.41462 * 23 21 18 25 25 O 1.34230 * 119.99959 * 65.41477 * 23 21 18 26 26 O 1.43244 * 107.58857 * 21.35528 * 21 18 17 27 27 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 29 29 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 31 31 H 1.09005 * 111.12316 * 273.27418 * 17 15 13 32 32 H 1.09000 * 111.12972 * 37.43696 * 17 15 13 33 33 H 1.09005 * 109.47479 * 174.28522 * 20 18 17 34 34 H 1.09001 * 109.47378 * 294.28147 * 20 18 17 35 35 H 1.08997 * 109.47102 * 54.28879 * 20 18 17 36 36 H 0.96697 * 117.00025 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.1571 -2.2791 3.6039 10 1 3.1606 -0.1759 4.8105 11 1 1.1811 -1.5768 4.8222 12 8 2.0140 -0.6846 -1.1855 13 6 2.2172 0.0639 -2.2811 14 8 1.9974 1.2516 -2.2506 15 6 2.7183 -0.5775 -3.5494 16 1 3.6378 -1.1299 -3.3555 17 6 1.6377 -1.5178 -4.1399 18 6 2.0450 -1.5305 -5.6385 19 1 2.8272 -2.2664 -5.8250 20 6 0.8301 -1.7928 -6.5307 21 6 2.5790 -0.0968 -5.8451 22 1 1.8031 0.5263 -6.2899 23 6 3.7898 -0.1265 -6.7418 24 8 4.8708 0.1950 -6.3083 25 8 3.6674 -0.5101 -8.0223 26 8 2.9396 0.4203 -4.5588 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 0.7164 1.1670 3.4843 31 1 1.7054 -2.5154 -3.7059 32 1 0.6393 -1.1009 -4.0077 33 1 1.1201 -1.6967 -7.5771 34 1 0.4563 -2.8004 -6.3486 35 1 0.0484 -1.0684 -6.3024 36 1 4.4719 -0.5126 -8.5586 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604065733.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:20 Heat of formation + Delta-G solvation = -226.954792 kcal Electronic energy + Delta-G solvation = -21405.052482 eV Core-core repulsion = 17854.499496 eV Total energy + Delta-G solvation = -3550.552986 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.07615 -39.79780 -38.65194 -36.31230 -35.68593 -33.93120 -33.29301 -31.07528 -29.46281 -27.54543 -25.36622 -24.99079 -22.15085 -21.63211 -20.86503 -19.53077 -18.58350 -17.54246 -17.18097 -16.78137 -16.13477 -15.85799 -15.59344 -15.22104 -14.78006 -14.40453 -13.92828 -13.67113 -13.36725 -13.06640 -12.64816 -12.40194 -12.18884 -11.89948 -11.76286 -11.67369 -11.39037 -11.27432 -11.14059 -11.07167 -10.87823 -10.81186 -10.38570 -10.29630 -10.03426 -9.60431 -9.42006 -8.92699 -8.51338 -6.20138 -4.27187 1.93608 2.39667 2.85963 3.17655 3.23259 3.30765 3.36527 3.81229 4.09873 4.32017 4.48674 4.52640 4.78538 4.94818 5.02529 5.07210 5.13362 5.32700 5.46172 5.52974 5.66011 5.67799 5.80906 5.92183 6.21932 6.52201 6.61245 6.85122 6.87468 7.11455 7.57644 7.66180 7.69540 7.90876 8.10788 8.59607 8.85243 9.38331 10.87434 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.036208 B = 0.003941 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.134463 B = 7103.645020 C = 7283.176580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H 0.048 0.952 4 C -0.521 4.521 5 H 0.070 0.930 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.913 3.087 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.352 6.352 13 C 0.454 3.546 14 O -0.499 6.499 15 C 0.084 3.916 16 H 0.111 0.889 17 C -0.136 4.136 18 C -0.111 4.111 19 H 0.095 0.905 20 C -0.143 4.143 21 C 0.093 3.907 22 H 0.126 0.874 23 C 0.465 3.535 24 O -0.494 6.494 25 O -0.514 6.514 26 O -0.321 6.321 27 H 0.037 0.963 28 H 0.100 0.900 29 H 0.016 0.984 30 H 0.266 0.734 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.230 -6.925 -19.247 20.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.559 4.559 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.526 5.526 8 Si 0.740 3.260 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.269 6.269 13 C 0.294 3.706 14 O -0.387 6.387 15 C 0.026 3.974 16 H 0.128 0.872 17 C -0.173 4.173 18 C -0.129 4.129 19 H 0.113 0.887 20 C -0.200 4.200 21 C 0.033 3.967 22 H 0.143 0.857 23 C 0.305 3.695 24 O -0.380 6.380 25 O -0.327 6.327 26 O -0.239 6.239 27 H 0.057 0.943 28 H 0.118 0.882 29 H 0.035 0.965 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 0.096 -6.140 -18.619 19.605 hybrid contribution 0.855 -0.297 0.482 1.025 sum 0.951 -6.437 -18.137 19.269 Atomic orbital electron populations 1.22162 0.97419 1.00136 1.01477 1.20706 0.91467 0.94068 0.77468 0.93452 1.21056 1.32621 1.13451 0.88769 0.91172 1.24896 0.94928 0.95077 0.99096 1.69911 1.36095 1.22491 1.24139 0.86205 0.78637 0.79475 0.81731 1.19454 1.20728 1.20701 1.86463 1.75986 1.43462 1.20942 1.22806 0.75849 0.86124 0.85794 1.90633 1.47184 1.16579 1.84312 1.22493 0.99931 0.88462 0.86523 0.87193 1.23344 0.99420 1.01490 0.93052 1.22680 0.99863 0.94152 0.96240 0.88694 1.21761 0.96031 1.02835 0.99378 1.22362 0.91530 0.97974 0.84792 0.85684 1.23878 0.91216 0.73224 0.81148 1.90764 1.29052 1.43108 1.75068 1.84498 1.44141 1.80519 1.23569 1.88665 1.86494 1.36094 1.12626 0.94339 0.88181 0.96502 0.92405 0.87462 0.88826 0.91260 0.91270 0.91649 0.73037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.86 9.33 37.16 0.35 -3.52 16 2 C 0.21 5.78 2.56 -27.88 -0.07 5.71 16 3 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 4 C -0.52 -14.58 8.89 -34.44 -0.31 -14.89 16 5 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 6 C 0.06 1.71 5.31 -17.82 -0.09 1.62 16 7 N -0.89 -25.24 11.33 55.43 0.63 -24.61 16 8 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 16 9 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 O -0.35 -8.27 9.86 -39.28 -0.39 -8.65 16 13 C 0.45 9.72 7.28 36.00 0.26 9.99 16 14 O -0.50 -12.47 15.77 -25.31 -0.40 -12.86 16 15 C 0.08 1.34 3.97 -26.86 -0.11 1.24 16 16 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 17 C -0.14 -1.55 6.02 -24.49 -0.15 -1.70 16 18 C -0.11 -1.00 3.11 -88.68 -0.28 -1.27 16 19 H 0.09 0.76 7.84 -51.93 -0.41 0.36 16 20 C -0.14 -0.96 9.14 37.16 0.34 -0.62 16 21 C 0.09 1.08 3.67 -27.16 -0.10 0.99 16 22 H 0.13 1.22 7.81 -51.93 -0.41 0.82 16 23 C 0.46 5.42 7.51 36.00 0.27 5.69 16 24 O -0.49 -7.82 17.28 -25.40 -0.44 -8.25 16 25 O -0.51 -3.89 13.42 -39.26 -0.53 -4.42 16 26 O -0.32 -5.35 9.82 -64.46 -0.63 -5.99 16 27 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.10 2.69 6.08 -51.93 -0.32 2.37 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.09 1.10 7.93 -51.93 -0.41 0.69 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 36 H 0.41 1.44 9.10 45.56 0.41 1.85 16 LS Contribution 314.15 15.07 4.73 4.73 Total: -1.00 -34.97 314.15 -5.93 -40.90 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -4.00 Total: -0.07 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 0.12 Total: 3.23 kcal Atomic # 7 Polarization: -25.24 SS G_CDS: 0.63 Total: -24.61 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -2.39 Total: -40.18 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.97 -5.93 -40.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604065733.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.054 kcal (2) G-P(sol) polarization free energy of solvation -34.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds