Wall clock time and date at job start Mon Mar 30 2020 01:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 O 1.45202 * 109.47203 * 239.99344 * 2 1 3 13 13 C 1.34237 * 116.99443 * 90.00402 * 12 2 1 14 14 O 1.20822 * 120.00184 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99347 * 180.02562 * 13 12 2 16 16 H 1.09003 * 110.27705 * 305.63171 * 15 13 12 17 17 C 1.54939 * 110.31308 * 67.83378 * 15 13 12 18 18 C 1.55304 * 100.94323 * 155.35628 * 17 15 13 19 19 H 1.09002 * 111.02440 * 84.13624 * 18 17 15 20 20 C 1.52998 * 110.84717 * 207.67417 * 18 17 15 21 21 C 1.54377 * 102.25446 * 325.86644 * 18 17 15 22 22 H 1.09001 * 109.83125 * 261.84181 * 21 18 17 23 23 C 1.50698 * 109.83240 * 140.86811 * 21 18 17 24 24 O 1.20825 * 120.00473 * 245.41462 * 23 21 18 25 25 O 1.34230 * 119.99959 * 65.41477 * 23 21 18 26 26 O 1.43244 * 107.58857 * 21.35528 * 21 18 17 27 27 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 29 29 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 31 31 H 1.09005 * 111.12316 * 273.27418 * 17 15 13 32 32 H 1.09000 * 111.12972 * 37.43696 * 17 15 13 33 33 H 1.09005 * 109.47479 * 174.28522 * 20 18 17 34 34 H 1.09001 * 109.47378 * 294.28147 * 20 18 17 35 35 H 1.08997 * 109.47102 * 54.28879 * 20 18 17 36 36 H 0.96697 * 117.00025 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.1571 -2.2791 3.6039 10 1 3.1606 -0.1759 4.8105 11 1 1.1811 -1.5768 4.8222 12 8 2.0140 -0.6846 -1.1855 13 6 2.2172 0.0639 -2.2811 14 8 1.9974 1.2516 -2.2506 15 6 2.7183 -0.5775 -3.5494 16 1 3.6378 -1.1299 -3.3555 17 6 1.6377 -1.5178 -4.1399 18 6 2.0450 -1.5305 -5.6385 19 1 2.8272 -2.2664 -5.8250 20 6 0.8301 -1.7928 -6.5307 21 6 2.5790 -0.0968 -5.8451 22 1 1.8031 0.5263 -6.2899 23 6 3.7898 -0.1265 -6.7418 24 8 4.8708 0.1950 -6.3083 25 8 3.6674 -0.5101 -8.0223 26 8 2.9396 0.4203 -4.5588 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 0.7164 1.1670 3.4843 31 1 1.7054 -2.5154 -3.7059 32 1 0.6393 -1.1009 -4.0077 33 1 1.1201 -1.6967 -7.5771 34 1 0.4563 -2.8004 -6.3486 35 1 0.0484 -1.0684 -6.3024 36 1 4.4719 -0.5126 -8.5586 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604065733.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:19 Heat of formation + Delta-G solvation = -250.873294 kcal Electronic energy + Delta-G solvation = -21406.089666 eV Core-core repulsion = 17854.499496 eV Total energy + Delta-G solvation = -3551.590170 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.15403 -41.23998 -39.91278 -37.57788 -37.15287 -35.37509 -34.80925 -32.42570 -31.32020 -28.31588 -27.46966 -26.22872 -23.63573 -22.68438 -22.00828 -21.14673 -19.52140 -18.93791 -18.71900 -18.20451 -17.54936 -17.15565 -17.05902 -16.65397 -16.43537 -15.72177 -15.05563 -14.88818 -14.50742 -14.18149 -14.07373 -13.94124 -13.41434 -13.26816 -13.20287 -12.96535 -12.82035 -12.64818 -12.56246 -12.40468 -12.22047 -12.14268 -11.93661 -11.82685 -11.63432 -11.28592 -11.02061 -10.87644 -10.61079 -8.29831 -6.47022 1.03712 1.15823 1.33636 1.43189 1.44687 1.58375 1.97567 2.37887 2.74295 3.01230 3.16253 3.51767 3.65030 3.83852 3.94954 4.03134 4.23302 4.40359 4.48774 4.51637 4.74901 4.77214 4.80919 4.87218 5.04474 5.10812 5.13417 5.41660 5.42929 5.47252 5.57421 5.60912 5.88618 6.02755 6.58153 6.88188 6.92844 7.24576 8.78297 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.036208 B = 0.003941 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.134463 B = 7103.645020 C = 7283.176580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.215 3.785 3 H 0.003 0.997 4 C -0.548 4.548 5 H 0.071 0.929 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.985 3.015 9 H -0.262 1.262 10 H -0.278 1.278 11 H -0.270 1.270 12 O -0.351 6.351 13 C 0.448 3.552 14 O -0.543 6.543 15 C 0.089 3.911 16 H 0.126 0.874 17 C -0.130 4.130 18 C -0.094 4.094 19 H 0.111 0.889 20 C -0.139 4.139 21 C 0.080 3.920 22 H 0.143 0.857 23 C 0.477 3.523 24 O -0.544 6.544 25 O -0.495 6.495 26 O -0.358 6.358 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.024 0.976 30 H 0.271 0.729 31 H 0.129 0.871 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.011 -9.238 -20.476 22.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.162 3.838 3 H 0.021 0.979 4 C -0.585 4.585 5 H 0.089 0.911 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.808 3.192 9 H -0.185 1.185 10 H -0.204 1.204 11 H -0.195 1.195 12 O -0.267 6.267 13 C 0.291 3.709 14 O -0.433 6.433 15 C 0.030 3.970 16 H 0.143 0.857 17 C -0.167 4.167 18 C -0.112 4.112 19 H 0.130 0.870 20 C -0.196 4.196 21 C 0.021 3.979 22 H 0.160 0.840 23 C 0.320 3.680 24 O -0.434 6.434 25 O -0.309 6.309 26 O -0.277 6.277 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.147 0.853 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -0.135 -8.477 -19.914 21.643 hybrid contribution 0.927 0.488 0.721 1.271 sum 0.792 -7.988 -19.193 20.804 Atomic orbital electron populations 1.21967 0.96207 1.00789 1.00837 1.20437 0.92432 0.91982 0.78928 0.97926 1.21330 1.33556 1.13901 0.89731 0.91123 1.25858 0.94707 0.95628 1.02217 1.70033 1.36655 1.23636 1.25228 0.85101 0.78366 0.78387 0.77339 1.18544 1.20394 1.19464 1.86449 1.76164 1.43213 1.20913 1.24047 0.74408 0.85786 0.86611 1.90604 1.49159 1.18586 1.84957 1.22618 1.01802 0.88495 0.84047 0.85707 1.23430 0.97540 1.01160 0.94560 1.22692 1.01236 0.92601 0.94720 0.87047 1.21780 0.94725 1.03683 0.99416 1.22738 0.92102 1.00085 0.82934 0.83955 1.23780 0.90212 0.72025 0.82008 1.90757 1.30763 1.45632 1.76242 1.84441 1.45390 1.79257 1.21818 1.88619 1.86880 1.37567 1.14620 0.92854 0.90152 0.95733 0.91964 0.85262 0.89246 0.89945 0.89760 0.91796 0.70604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.17 9.33 71.98 0.67 -6.49 16 2 C 0.22 11.96 2.56 29.85 0.08 12.04 16 3 H 0.00 0.18 7.16 -2.39 -0.02 0.17 16 4 C -0.55 -31.12 8.89 25.60 0.23 -30.89 16 5 H 0.07 3.90 7.81 -2.91 -0.02 3.88 16 6 C 0.02 0.86 5.31 84.66 0.45 1.31 16 7 N -0.92 -52.97 11.33 21.45 0.24 -52.73 16 8 Si 0.99 42.79 29.54 68.60 2.03 44.82 16 9 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 10 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 12 O -0.35 -16.83 9.86 -51.48 -0.51 -17.34 16 13 C 0.45 19.73 7.28 71.23 0.52 20.25 16 14 O -0.54 -28.42 15.77 28.25 0.45 -27.97 16 15 C 0.09 2.79 3.97 30.51 0.12 2.91 16 16 H 0.13 3.53 8.14 -2.39 -0.02 3.51 16 17 C -0.13 -2.69 6.02 32.05 0.19 -2.50 16 18 C -0.09 -1.41 3.11 -9.54 -0.03 -1.44 16 19 H 0.11 1.36 7.84 -2.39 -0.02 1.34 16 20 C -0.14 -1.34 9.14 71.98 0.66 -0.68 16 21 C 0.08 1.73 3.67 30.31 0.11 1.84 16 22 H 0.14 2.52 7.81 -2.39 -0.02 2.50 16 23 C 0.48 10.30 7.51 71.24 0.54 10.83 16 24 O -0.54 -16.98 17.28 28.33 0.49 -16.49 16 25 O -0.49 -5.96 13.42 -51.42 -0.69 -6.65 16 26 O -0.36 -11.96 9.82 -121.03 -1.19 -13.15 16 27 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.08 4.43 6.08 -2.39 -0.01 4.42 16 29 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.27 14.56 8.31 -92.70 -0.77 13.79 16 31 H 0.13 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.09 1.95 7.93 -2.39 -0.02 1.94 16 33 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.06 0.66 8.12 -2.39 -0.02 0.64 16 36 H 0.43 1.70 9.10 -74.06 -0.67 1.02 16 Total: -1.00 -78.82 314.15 4.78 -74.04 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 0.43 Total: 8.29 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 3.53 Total: 7.18 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.24 Total: -52.73 kcal Atomic # 8 Polarization: -80.15 SS G_CDS: -1.45 Total: -81.60 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -78.82 4.78 -74.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604065733.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.835 kcal (2) G-P(sol) polarization free energy of solvation -78.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds