Wall clock time and date at job start Mon Mar 30 2020 01:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46933 * 2 1 4 4 H 1.09003 * 109.46976 * 304.99717 * 3 2 1 5 5 C 1.50698 * 109.47456 * 184.99888 * 3 2 1 6 6 H 1.08006 * 120.00272 * 240.00446 * 5 3 2 7 7 C 1.37878 * 120.00303 * 59.99310 * 5 3 2 8 8 N 1.31513 * 119.99520 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00298 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47110 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46878 * 120.00166 * 9 7 5 12 12 H 1.48495 * 109.47392 * 240.00136 * 9 7 5 13 13 O 1.45202 * 109.47569 * 64.99758 * 3 2 1 14 14 C 1.34230 * 116.99836 * 270.00626 * 13 3 2 15 15 O 1.20833 * 119.99930 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00262 * 180.27336 * 14 13 3 17 17 H 1.09001 * 110.33271 * 56.97078 * 16 14 13 18 18 C 1.54484 * 110.37034 * 294.72324 * 16 14 13 19 19 C 1.54516 * 104.06089 * 217.19037 * 18 16 14 20 20 C 1.54475 * 104.06266 * 359.97438 * 19 18 16 21 21 H 1.09002 * 110.37417 * 265.03778 * 20 19 18 22 22 C 1.50700 * 110.37099 * 142.81308 * 20 19 18 23 23 O 1.20831 * 119.99759 * 245.00061 * 22 20 19 24 24 O 1.34224 * 119.99763 * 65.00002 * 22 20 19 25 25 O 1.44421 * 110.37808 * 179.33844 * 16 14 13 26 26 H 1.09000 * 109.46880 * 60.00514 * 1 2 3 27 27 H 1.09009 * 109.46979 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47703 * 299.99908 * 1 2 3 29 29 H 1.08997 * 109.47454 * 239.99601 * 2 1 3 30 30 H 1.09000 * 109.46880 * 119.99486 * 2 1 3 31 31 H 0.97008 * 120.00169 * 179.97438 * 8 7 5 32 32 H 1.08998 * 110.50944 * 335.82967 * 18 16 14 33 33 H 1.08996 * 110.51481 * 98.40578 * 18 16 14 34 34 H 1.08993 * 110.50927 * 118.64482 * 19 18 16 35 35 H 1.09002 * 110.50796 * 241.35225 * 19 18 16 36 36 H 0.96706 * 116.99732 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1433 0.8785 -1.2278 8 7 3.4063 0.3374 -2.1731 9 14 6.0050 0.8802 -1.3809 10 1 6.5987 1.5446 -0.1929 11 1 6.4962 -0.5188 -1.4623 12 1 6.4000 1.6158 -2.6090 13 8 1.6558 2.0918 1.2407 14 6 0.4725 2.7254 1.2558 15 8 -0.2191 2.7375 0.2651 16 6 0.0097 3.4274 2.5064 17 1 0.7441 4.1704 2.8175 18 6 -0.2334 2.4048 3.6385 19 6 -1.4748 2.9518 4.3783 20 6 -1.8343 4.2405 3.6061 21 1 -1.3858 5.1092 4.0880 22 6 -3.3303 4.4020 3.5230 23 8 -3.8845 4.3537 2.4503 24 8 -4.0471 4.5996 4.6404 25 8 -1.2757 4.0486 2.2880 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8294 -0.0605 -2.9501 32 1 -0.4399 1.4181 3.2240 33 1 0.6258 2.3645 4.3079 34 1 -2.2948 2.2355 4.3296 35 1 -1.2301 3.1837 5.4149 36 1 -5.0037 4.6973 4.5369 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604981170.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:01 Heat of formation + Delta-G solvation = -223.673869 kcal Electronic energy + Delta-G solvation = -21597.909306 eV Core-core repulsion = 18047.498592 eV Total energy + Delta-G solvation = -3550.410715 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.90129 -39.87301 -38.62216 -36.31039 -35.70453 -33.56373 -32.43161 -31.43835 -30.55432 -27.34866 -25.56641 -23.21921 -22.39673 -21.47307 -20.83793 -19.53691 -18.33235 -17.66305 -17.04071 -16.69231 -16.53408 -15.65098 -15.43466 -15.19200 -14.97897 -14.52364 -14.07070 -13.78331 -13.00973 -12.84906 -12.59456 -12.25586 -12.00961 -11.81630 -11.64640 -11.47711 -11.31825 -11.16669 -11.10894 -10.98242 -10.70777 -10.63235 -10.29014 -10.20880 -9.79984 -9.51708 -9.35169 -8.82394 -8.47501 -6.20102 -4.27576 1.94048 2.26910 2.90614 3.21328 3.23034 3.30702 3.36564 3.97862 4.26354 4.37439 4.52214 4.62516 4.79017 4.92588 5.07264 5.12071 5.32544 5.50043 5.61166 5.67534 5.85028 6.20036 6.22373 6.28886 6.39148 6.46577 6.84870 6.95577 7.15622 7.22532 7.59935 7.64900 7.71593 7.92858 8.12965 8.60678 8.86050 9.37694 10.86708 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.039392 B = 0.004133 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.639497 B = 6772.347796 C = 6976.877771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.522 4.522 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.912 3.088 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.282 1.282 13 O -0.351 6.351 14 C 0.455 3.545 15 O -0.490 6.490 16 C 0.081 3.919 17 H 0.111 0.889 18 C -0.140 4.140 19 C -0.138 4.138 20 C 0.082 3.918 21 H 0.115 0.885 22 C 0.482 3.518 23 O -0.486 6.486 24 O -0.514 6.514 25 O -0.319 6.319 26 H 0.053 0.947 27 H 0.033 0.967 28 H 0.031 0.969 29 H 0.109 0.891 30 H 0.042 0.958 31 H 0.266 0.734 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.010 5.326 15.771 18.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.560 4.560 6 H 0.088 0.912 7 C -0.140 4.140 8 N -0.524 5.524 9 Si 0.739 3.261 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.207 1.207 13 O -0.268 6.268 14 C 0.295 3.705 15 O -0.378 6.378 16 C 0.022 3.978 17 H 0.129 0.871 18 C -0.178 4.178 19 C -0.176 4.176 20 C 0.023 3.977 21 H 0.132 0.868 22 C 0.322 3.678 23 O -0.370 6.370 24 O -0.327 6.327 25 O -0.237 6.237 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.127 0.873 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -8.995 5.196 14.768 18.056 hybrid contribution 0.235 -0.024 -0.254 0.347 sum -8.761 5.172 14.514 17.724 Atomic orbital electron populations 1.21873 0.98316 0.99049 1.00849 1.22026 0.92621 0.99266 1.03428 1.20746 0.95083 0.88763 0.78450 0.93409 1.21065 0.89503 1.39049 1.06333 0.91196 1.24894 0.99291 0.94747 0.95039 1.69903 1.35340 1.37763 1.09437 0.86218 0.83800 0.77876 0.78234 1.19468 1.20717 1.20749 1.86446 1.33348 1.62543 1.44497 1.22534 0.81510 0.77876 0.88551 1.90672 1.55063 1.57053 1.34986 1.22493 0.87074 0.95449 0.92783 0.87134 1.22901 0.98578 0.99907 0.96386 1.22910 0.99024 0.95365 1.00306 1.22371 0.87743 1.01071 0.86525 0.86776 1.22862 0.90311 0.73040 0.81618 1.90806 1.72161 1.44099 1.29972 1.84458 1.26442 1.84426 1.37407 1.89389 1.31073 1.80456 1.22789 0.92741 0.94742 0.95040 0.87255 0.93902 0.92389 0.89366 0.88097 0.89812 0.88334 0.72634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.57 37.16 0.32 -2.88 16 2 C -0.14 -3.34 5.49 -26.73 -0.15 -3.49 16 3 C 0.22 5.85 2.25 -27.89 -0.06 5.79 16 4 H 0.05 1.42 7.16 -51.93 -0.37 1.04 16 5 C -0.52 -14.38 8.90 -34.44 -0.31 -14.68 16 6 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.93 11.29 55.43 0.63 -24.31 16 9 Si 0.91 20.78 29.54 -169.99 -5.02 15.76 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 O -0.35 -8.10 9.81 -39.26 -0.39 -8.48 16 14 C 0.45 9.59 5.65 36.00 0.20 9.79 16 15 O -0.49 -12.14 13.70 -25.29 -0.35 -12.49 16 16 C 0.08 1.22 3.82 -27.11 -0.10 1.12 16 17 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 18 C -0.14 -1.61 6.62 -25.16 -0.17 -1.77 16 19 C -0.14 -1.24 6.62 -25.16 -0.17 -1.41 16 20 C 0.08 0.91 3.82 -27.11 -0.10 0.81 16 21 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 22 C 0.48 5.70 7.57 36.01 0.27 5.97 16 23 O -0.49 -8.05 17.31 -25.29 -0.44 -8.49 16 24 O -0.51 -3.88 13.42 -39.24 -0.53 -4.41 16 25 O -0.32 -5.24 10.17 -64.26 -0.65 -5.90 16 26 H 0.05 1.30 7.80 -51.93 -0.40 0.89 16 27 H 0.03 0.67 8.14 -51.92 -0.42 0.25 16 28 H 0.03 0.67 6.06 -51.93 -0.31 0.35 16 29 H 0.11 2.93 5.95 -51.93 -0.31 2.63 16 30 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.09 1.15 7.86 -51.93 -0.41 0.75 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.08 0.76 7.87 -51.93 -0.41 0.36 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.41 1.43 9.10 45.56 0.41 1.85 16 LS Contribution 307.92 15.07 4.64 4.64 Total: -1.00 -35.12 307.92 -6.34 -41.46 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -3.88 Total: 1.36 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -0.36 Total: 0.85 kcal Atomic # 7 Polarization: -24.93 SS G_CDS: 0.63 Total: -24.31 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -2.35 Total: -39.77 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.12 -6.34 -41.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604981170.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.214 kcal (2) G-P(sol) polarization free energy of solvation -35.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds