Wall clock time and date at job start Mon Mar 30 2020 01:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46933 * 2 1 4 4 H 1.09003 * 109.46976 * 304.99717 * 3 2 1 5 5 C 1.50698 * 109.47456 * 184.99888 * 3 2 1 6 6 H 1.08006 * 120.00272 * 240.00446 * 5 3 2 7 7 C 1.37878 * 120.00303 * 59.99310 * 5 3 2 8 8 N 1.31513 * 119.99520 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00298 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47110 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46878 * 120.00166 * 9 7 5 12 12 H 1.48495 * 109.47392 * 240.00136 * 9 7 5 13 13 O 1.45202 * 109.47569 * 64.99758 * 3 2 1 14 14 C 1.34230 * 116.99836 * 270.00626 * 13 3 2 15 15 O 1.20833 * 119.99930 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00262 * 180.27336 * 14 13 3 17 17 H 1.09001 * 110.33271 * 56.97078 * 16 14 13 18 18 C 1.54484 * 110.37034 * 294.72324 * 16 14 13 19 19 C 1.54516 * 104.06089 * 217.19037 * 18 16 14 20 20 C 1.54475 * 104.06266 * 359.97438 * 19 18 16 21 21 H 1.09002 * 110.37417 * 265.03778 * 20 19 18 22 22 C 1.50700 * 110.37099 * 142.81308 * 20 19 18 23 23 O 1.20831 * 119.99759 * 245.00061 * 22 20 19 24 24 O 1.34224 * 119.99763 * 65.00002 * 22 20 19 25 25 O 1.44421 * 110.37808 * 179.33844 * 16 14 13 26 26 H 1.09000 * 109.46880 * 60.00514 * 1 2 3 27 27 H 1.09009 * 109.46979 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47703 * 299.99908 * 1 2 3 29 29 H 1.08997 * 109.47454 * 239.99601 * 2 1 3 30 30 H 1.09000 * 109.46880 * 119.99486 * 2 1 3 31 31 H 0.97008 * 120.00169 * 179.97438 * 8 7 5 32 32 H 1.08998 * 110.50944 * 335.82967 * 18 16 14 33 33 H 1.08996 * 110.51481 * 98.40578 * 18 16 14 34 34 H 1.08993 * 110.50927 * 118.64482 * 19 18 16 35 35 H 1.09002 * 110.50796 * 241.35225 * 19 18 16 36 36 H 0.96706 * 116.99732 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1433 0.8785 -1.2278 8 7 3.4063 0.3374 -2.1731 9 14 6.0050 0.8802 -1.3809 10 1 6.5987 1.5446 -0.1929 11 1 6.4962 -0.5188 -1.4623 12 1 6.4000 1.6158 -2.6090 13 8 1.6558 2.0918 1.2407 14 6 0.4725 2.7254 1.2558 15 8 -0.2191 2.7375 0.2651 16 6 0.0097 3.4274 2.5064 17 1 0.7441 4.1704 2.8175 18 6 -0.2334 2.4048 3.6385 19 6 -1.4748 2.9518 4.3783 20 6 -1.8343 4.2405 3.6061 21 1 -1.3858 5.1092 4.0880 22 6 -3.3303 4.4020 3.5230 23 8 -3.8845 4.3537 2.4503 24 8 -4.0471 4.5996 4.6404 25 8 -1.2757 4.0486 2.2880 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8294 -0.0605 -2.9501 32 1 -0.4399 1.4181 3.2240 33 1 0.6258 2.3645 4.3079 34 1 -2.2948 2.2355 4.3296 35 1 -1.2301 3.1837 5.4149 36 1 -5.0037 4.6973 4.5369 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604981170.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:00 Heat of formation + Delta-G solvation = -248.380195 kcal Electronic energy + Delta-G solvation = -21598.980653 eV Core-core repulsion = 18047.498592 eV Total energy + Delta-G solvation = -3551.482061 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.99026 -41.27424 -39.84352 -37.57406 -37.15275 -35.54427 -33.47441 -33.32030 -31.65672 -29.32262 -26.77125 -25.14233 -23.43861 -22.46114 -22.28609 -21.33975 -19.41799 -18.87064 -18.69458 -17.97707 -17.89124 -17.12893 -16.85508 -16.63686 -16.23453 -16.05452 -15.13869 -14.87944 -14.78968 -14.50605 -14.12519 -13.48477 -13.37985 -13.15684 -13.13019 -12.87398 -12.85196 -12.78790 -12.59606 -12.55761 -12.11928 -12.00078 -11.78010 -11.68200 -11.44829 -11.27469 -10.99817 -10.83764 -10.53581 -8.27232 -6.44639 1.05658 1.23770 1.32325 1.44052 1.44803 1.58701 1.98662 2.39841 2.97453 3.02868 3.42000 3.58737 3.78643 3.91814 3.97774 4.11886 4.33081 4.34933 4.35699 4.51437 4.53576 4.79566 4.84059 4.92474 4.97188 5.05257 5.18226 5.32396 5.43070 5.51256 5.56407 5.65106 5.95745 6.09121 6.61189 6.91360 6.95485 7.26891 8.79963 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.039392 B = 0.004133 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.639497 B = 6772.347796 C = 6976.877771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.128 4.128 3 C 0.224 3.776 4 H 0.001 0.999 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 0.984 3.016 10 H -0.260 1.260 11 H -0.272 1.272 12 H -0.279 1.279 13 O -0.350 6.350 14 C 0.446 3.554 15 O -0.537 6.537 16 C 0.086 3.914 17 H 0.148 0.852 18 C -0.136 4.136 19 C -0.124 4.124 20 C 0.072 3.928 21 H 0.157 0.843 22 C 0.489 3.511 23 O -0.547 6.547 24 O -0.493 6.493 25 O -0.364 6.364 26 H 0.028 0.972 27 H 0.063 0.937 28 H 0.035 0.965 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.270 0.730 32 H 0.064 0.936 33 H 0.135 0.865 34 H 0.078 0.922 35 H 0.146 0.854 36 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.159 5.644 18.941 21.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.019 0.981 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.555 5.555 9 Si 0.807 3.193 10 H -0.184 1.184 11 H -0.197 1.197 12 H -0.205 1.205 13 O -0.267 6.267 14 C 0.289 3.711 15 O -0.427 6.427 16 C 0.028 3.972 17 H 0.165 0.835 18 C -0.174 4.174 19 C -0.162 4.162 20 C 0.014 3.986 21 H 0.174 0.826 22 C 0.332 3.668 23 O -0.437 6.437 24 O -0.308 6.308 25 O -0.284 6.284 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.104 0.896 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.153 0.847 34 H 0.097 0.903 35 H 0.164 0.836 36 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -8.174 5.523 18.004 20.530 hybrid contribution -0.151 -0.063 -1.192 1.203 sum -8.324 5.460 16.813 19.539 Atomic orbital electron populations 1.21723 0.96712 1.00529 0.99810 1.21861 0.93971 0.98061 1.02684 1.20431 0.94775 0.89258 0.78443 0.98120 1.21363 0.90136 1.39904 1.07042 0.91014 1.25852 1.04400 0.93867 0.94326 1.70038 1.37501 1.38024 1.09907 0.85116 0.77464 0.78293 0.78417 1.18357 1.19713 1.20478 1.86427 1.34829 1.62901 1.42549 1.23911 0.80051 0.76809 0.90320 1.90651 1.55990 1.58685 1.37386 1.22718 0.87695 0.96799 0.90012 0.83504 1.22987 1.01230 0.97609 0.95548 1.22954 0.97444 0.93818 1.01962 1.22863 0.87187 1.03846 0.84702 0.82583 1.23137 0.90932 0.71366 0.81384 1.90796 1.73340 1.47216 1.32308 1.84414 1.28026 1.83250 1.35075 1.89349 1.31750 1.80717 1.26561 0.95292 0.91823 0.94569 0.89569 0.92807 0.92079 0.91666 0.84688 0.90297 0.83638 0.70392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.97 8.57 71.98 0.62 -5.35 16 2 C -0.13 -6.48 5.49 30.59 0.17 -6.31 16 3 C 0.22 12.29 2.25 29.85 0.07 12.35 16 4 H 0.00 0.06 7.16 -2.39 -0.02 0.05 16 5 C -0.55 -30.71 8.90 25.60 0.23 -30.48 16 6 H 0.07 3.89 7.81 -2.91 -0.02 3.87 16 7 C 0.02 0.83 5.29 84.66 0.45 1.28 16 8 N -0.92 -52.85 11.29 21.45 0.24 -52.60 16 9 Si 0.98 42.48 29.54 68.60 2.03 44.50 16 10 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 11 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 12 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 13 O -0.35 -16.44 9.81 -51.41 -0.50 -16.95 16 14 C 0.45 19.21 5.65 71.23 0.40 19.61 16 15 O -0.54 -28.05 13.70 28.19 0.39 -27.66 16 16 C 0.09 2.48 3.82 30.35 0.12 2.59 16 17 H 0.15 3.14 8.14 -2.39 -0.02 3.12 16 18 C -0.14 -2.73 6.62 31.61 0.21 -2.52 16 19 C -0.12 -1.73 6.62 31.61 0.21 -1.52 16 20 C 0.07 1.39 3.82 30.35 0.12 1.50 16 21 H 0.16 1.68 8.14 -2.39 -0.02 1.66 16 22 C 0.49 10.76 7.57 71.24 0.54 11.30 16 23 O -0.55 -18.37 17.31 28.20 0.49 -17.88 16 24 O -0.49 -5.96 13.42 -51.36 -0.69 -6.65 16 25 O -0.36 -11.75 10.17 -121.22 -1.23 -12.98 16 26 H 0.03 1.43 7.80 -2.39 -0.02 1.41 16 27 H 0.06 2.48 8.14 -2.38 -0.02 2.47 16 28 H 0.04 1.58 6.06 -2.39 -0.01 1.57 16 29 H 0.09 4.79 5.95 -2.39 -0.01 4.78 16 30 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.27 14.53 8.31 -92.70 -0.77 13.76 16 32 H 0.06 1.62 7.86 -2.39 -0.02 1.60 16 33 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 1.20 7.87 -2.39 -0.02 1.18 16 35 H 0.15 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.43 1.87 9.10 -74.05 -0.67 1.20 16 Total: -1.00 -82.07 307.92 4.27 -77.80 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.43 Total: 9.97 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 3.12 Total: 2.45 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.24 Total: -52.60 kcal Atomic # 8 Polarization: -80.57 SS G_CDS: -1.55 Total: -82.12 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -82.07 4.27 -77.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604981170.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.580 kcal (2) G-P(sol) polarization free energy of solvation -82.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds