Wall clock time and date at job start Mon Mar 30 2020 01:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47237 * 2 1 4 4 H 1.08995 * 109.46866 * 55.00272 * 3 2 1 5 5 C 1.50694 * 109.46981 * 175.00467 * 3 2 1 6 6 H 1.08003 * 120.00181 * 120.00032 * 5 3 2 7 7 C 1.37886 * 120.00086 * 299.99833 * 5 3 2 8 8 N 1.31510 * 119.99736 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99706 * 0.02562 * 7 5 3 10 10 H 1.48492 * 109.47014 * 89.99913 * 9 7 5 11 11 H 1.48496 * 109.46869 * 210.00168 * 9 7 5 12 12 H 1.48500 * 109.46926 * 329.99832 * 9 7 5 13 13 O 1.45200 * 109.47064 * 295.00277 * 3 2 1 14 14 C 1.34226 * 117.00054 * 89.99976 * 13 3 2 15 15 O 1.20827 * 120.00113 * 0.02562 * 14 13 3 16 16 C 1.50701 * 120.00100 * 179.97438 * 14 13 3 17 17 H 1.09006 * 110.41527 * 57.31473 * 16 14 13 18 18 C 1.54477 * 110.37389 * 295.00369 * 16 14 13 19 19 C 1.54510 * 104.18108 * 217.25757 * 18 16 14 20 20 C 1.54478 * 104.06500 * 359.93120 * 19 18 16 21 21 H 1.09004 * 110.36996 * 265.03321 * 20 19 18 22 22 C 1.50700 * 110.37139 * 142.81210 * 20 19 18 23 23 O 1.20827 * 119.99870 * 245.00005 * 22 20 19 24 24 O 1.34223 * 120.00077 * 64.99871 * 22 20 19 25 25 O 1.44415 * 104.80258 * 23.97587 * 20 19 18 26 26 H 1.08997 * 109.47135 * 59.99840 * 1 2 3 27 27 H 1.09001 * 109.46991 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46670 * 299.99649 * 1 2 3 29 29 H 1.09007 * 109.46834 * 239.99865 * 2 1 3 30 30 H 1.08994 * 109.47542 * 120.00489 * 2 1 3 31 31 H 0.97005 * 119.99594 * 180.02562 * 8 7 5 32 32 H 1.09002 * 110.51371 * 98.54272 * 18 16 14 33 33 H 1.08994 * 110.51108 * 335.96920 * 18 16 14 34 34 H 1.09000 * 110.51039 * 118.57850 * 19 18 16 35 35 H 1.08999 * 110.50726 * 241.28208 * 19 18 16 36 36 H 0.96700 * 117.00013 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1237 6 1 4.1472 1.8888 -0.6525 7 6 4.1434 0.8783 1.2279 8 7 5.4540 0.8803 1.3360 9 14 3.0965 0.1087 2.5700 10 1 2.8756 -1.3273 2.2633 11 1 3.7938 0.2347 3.8750 12 1 1.7878 0.8073 2.6386 13 8 1.6559 2.0917 -1.2407 14 6 0.4727 2.7254 -1.2559 15 8 -0.2188 2.7378 -0.2652 16 6 0.0074 3.4226 -2.5083 17 1 -0.0312 2.7213 -3.3419 18 6 0.9419 4.6060 -2.8439 19 6 -0.0083 5.6964 -3.3873 20 6 -1.4069 5.0440 -3.3184 21 1 -1.6635 4.5945 -4.2778 22 6 -2.4431 6.0648 -2.9246 23 8 -3.0305 5.9552 -1.8744 24 8 -2.7136 7.0957 -3.7404 25 8 -1.2899 4.0272 -2.2995 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 5.8772 0.4817 2.1126 32 1 1.6664 4.3166 -3.6052 33 1 1.4518 4.9564 -1.9465 34 1 0.0300 6.5850 -2.7572 35 1 0.2464 5.9461 -4.4173 36 1 -3.3863 7.7245 -3.4451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604981171.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:02 Heat of formation + Delta-G solvation = -214.026280 kcal Electronic energy + Delta-G solvation = -21619.565335 eV Core-core repulsion = 18069.572971 eV Total energy + Delta-G solvation = -3549.992364 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.95774 -40.02824 -38.76650 -36.35268 -35.95970 -33.69176 -32.47091 -31.95976 -30.65216 -27.88197 -25.68782 -22.94775 -22.42310 -21.52163 -21.27117 -19.82318 -18.42149 -17.79276 -17.08469 -16.82564 -16.64866 -16.11551 -15.62452 -15.29335 -14.99347 -14.65830 -14.09763 -13.81718 -13.51636 -12.94128 -12.50294 -12.40760 -12.14831 -12.03302 -11.97727 -11.78940 -11.57015 -11.48153 -11.25509 -11.13172 -10.77192 -10.72225 -10.29532 -10.06446 -9.84188 -9.64373 -9.46669 -9.11687 -8.68392 -6.26274 -4.28957 1.90040 2.19735 2.71374 3.09637 3.17222 3.30092 3.33565 3.90898 4.24250 4.27935 4.47638 4.56265 4.73641 4.85626 5.01760 5.03601 5.26210 5.35545 5.49565 5.63998 5.80383 5.86124 5.89826 5.96866 6.16573 6.30862 6.41661 6.55796 6.65321 6.72641 7.02178 7.32196 7.47537 7.61052 8.18737 8.53881 8.80009 9.30718 10.85503 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.033761 B = 0.004513 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.150230 B = 6202.427542 C = 6538.976372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.148 4.148 3 C 0.198 3.802 4 H 0.047 0.953 5 C -0.526 4.526 6 H 0.088 0.912 7 C 0.081 3.919 8 N -0.887 5.887 9 Si 0.875 3.125 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.260 1.260 13 O -0.336 6.336 14 C 0.456 3.544 15 O -0.491 6.491 16 C 0.083 3.917 17 H 0.112 0.888 18 C -0.141 4.141 19 C -0.138 4.138 20 C 0.083 3.917 21 H 0.115 0.885 22 C 0.482 3.518 23 O -0.487 6.487 24 O -0.513 6.513 25 O -0.320 6.320 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.270 0.730 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.017 8.737 -12.868 19.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.186 4.186 3 C 0.144 3.856 4 H 0.065 0.935 5 C -0.564 4.564 6 H 0.106 0.894 7 C -0.122 4.122 8 N -0.524 5.524 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.185 1.185 13 O -0.252 6.252 14 C 0.296 3.704 15 O -0.378 6.378 16 C 0.024 3.976 17 H 0.130 0.870 18 C -0.179 4.179 19 C -0.176 4.176 20 C 0.024 3.976 21 H 0.133 0.867 22 C 0.322 3.678 23 O -0.371 6.371 24 O -0.327 6.327 25 O -0.239 6.239 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.121 0.879 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -12.047 8.291 -12.068 18.960 hybrid contribution -0.858 -0.129 0.979 1.308 sum -12.904 8.162 -11.089 18.871 Atomic orbital electron populations 1.21907 0.96884 1.00117 1.01889 1.22372 0.94407 0.99497 1.02311 1.21030 0.96370 0.88103 0.80062 0.93488 1.20766 0.87548 1.40108 1.07934 0.89409 1.24717 0.94940 0.95215 0.97331 1.69829 1.08479 1.44212 1.29844 0.87016 0.81081 0.80188 0.81310 1.19855 1.21621 1.18455 1.86467 1.33561 1.62375 1.42823 1.22655 0.81278 0.77575 0.88883 1.90670 1.55107 1.56999 1.35070 1.22497 0.83707 0.96260 0.95138 0.87007 1.22909 0.98040 0.93010 1.03895 1.22920 0.91391 0.99432 1.03876 1.22365 0.93761 0.88065 0.93458 0.86739 1.22845 0.82187 0.80989 0.81760 1.90802 1.48580 1.73896 1.23866 1.84455 1.59844 1.37002 1.51369 1.89394 1.33192 1.49333 1.51967 0.93594 0.93820 0.92494 0.91117 0.91710 0.92008 0.87924 0.89063 0.89725 0.88248 0.72587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.57 37.16 0.32 -2.71 16 2 C -0.15 -3.34 5.14 -26.73 -0.14 -3.48 16 3 C 0.20 4.90 1.84 -27.89 -0.05 4.85 16 4 H 0.05 1.25 6.21 -51.93 -0.32 0.93 16 5 C -0.53 -14.75 9.48 -34.44 -0.33 -15.08 16 6 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 7 C 0.08 2.31 5.45 -17.82 -0.10 2.21 16 8 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 9 Si 0.88 21.54 24.41 -169.99 -4.15 17.39 16 10 H -0.27 -6.41 6.83 56.52 0.39 -6.02 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.26 -6.35 6.53 56.52 0.37 -5.99 16 13 O -0.34 -7.36 9.81 -39.25 -0.38 -7.74 16 14 C 0.46 9.02 5.65 36.01 0.20 9.22 16 15 O -0.49 -11.36 13.71 -25.26 -0.35 -11.70 16 16 C 0.08 1.18 3.83 -27.11 -0.10 1.07 16 17 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 18 C -0.14 -1.58 6.61 -25.16 -0.17 -1.75 16 19 C -0.14 -1.21 6.62 -25.16 -0.17 -1.37 16 20 C 0.08 0.87 3.83 -27.11 -0.10 0.77 16 21 H 0.12 0.82 8.14 -51.93 -0.42 0.39 16 22 C 0.48 5.49 7.57 36.01 0.27 5.76 16 23 O -0.49 -7.83 17.31 -25.29 -0.44 -8.27 16 24 O -0.51 -3.72 13.42 -39.24 -0.53 -4.24 16 25 O -0.32 -4.98 10.18 -64.22 -0.65 -5.64 16 26 H 0.04 0.89 6.06 -51.93 -0.31 0.58 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 1.21 7.80 -51.93 -0.40 0.80 16 29 H 0.07 1.52 8.14 -51.92 -0.42 1.09 16 30 H 0.06 1.51 3.21 -51.93 -0.17 1.34 16 31 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.20 7.86 -51.93 -0.41 0.79 16 34 H 0.08 0.76 7.86 -51.93 -0.41 0.35 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.41 1.31 9.10 45.56 0.41 1.73 16 LS Contribution 301.19 15.07 4.54 4.54 Total: -1.00 -35.96 301.19 -5.30 -41.26 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -3.75 Total: 0.45 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -0.36 Total: -0.50 kcal Atomic # 7 Polarization: -26.31 SS G_CDS: 0.77 Total: -25.54 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -2.35 Total: -37.60 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.15 Total: 17.39 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -35.96 -5.30 -41.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604981171.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.768 kcal (2) G-P(sol) polarization free energy of solvation -35.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds