Wall clock time and date at job start Mon Mar 30 2020 01:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47237 * 2 1 4 4 H 1.08995 * 109.46866 * 55.00272 * 3 2 1 5 5 C 1.50694 * 109.46981 * 175.00467 * 3 2 1 6 6 H 1.08003 * 120.00181 * 120.00032 * 5 3 2 7 7 C 1.37886 * 120.00086 * 299.99833 * 5 3 2 8 8 N 1.31510 * 119.99736 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99706 * 0.02562 * 7 5 3 10 10 H 1.48492 * 109.47014 * 89.99913 * 9 7 5 11 11 H 1.48496 * 109.46869 * 210.00168 * 9 7 5 12 12 H 1.48500 * 109.46926 * 329.99832 * 9 7 5 13 13 O 1.45200 * 109.47064 * 295.00277 * 3 2 1 14 14 C 1.34226 * 117.00054 * 89.99976 * 13 3 2 15 15 O 1.20827 * 120.00113 * 0.02562 * 14 13 3 16 16 C 1.50701 * 120.00100 * 179.97438 * 14 13 3 17 17 H 1.09006 * 110.41527 * 57.31473 * 16 14 13 18 18 C 1.54477 * 110.37389 * 295.00369 * 16 14 13 19 19 C 1.54510 * 104.18108 * 217.25757 * 18 16 14 20 20 C 1.54478 * 104.06500 * 359.93120 * 19 18 16 21 21 H 1.09004 * 110.36996 * 265.03321 * 20 19 18 22 22 C 1.50700 * 110.37139 * 142.81210 * 20 19 18 23 23 O 1.20827 * 119.99870 * 245.00005 * 22 20 19 24 24 O 1.34223 * 120.00077 * 64.99871 * 22 20 19 25 25 O 1.44415 * 104.80258 * 23.97587 * 20 19 18 26 26 H 1.08997 * 109.47135 * 59.99840 * 1 2 3 27 27 H 1.09001 * 109.46991 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46670 * 299.99649 * 1 2 3 29 29 H 1.09007 * 109.46834 * 239.99865 * 2 1 3 30 30 H 1.08994 * 109.47542 * 120.00489 * 2 1 3 31 31 H 0.97005 * 119.99594 * 180.02562 * 8 7 5 32 32 H 1.09002 * 110.51371 * 98.54272 * 18 16 14 33 33 H 1.08994 * 110.51108 * 335.96920 * 18 16 14 34 34 H 1.09000 * 110.51039 * 118.57850 * 19 18 16 35 35 H 1.08999 * 110.50726 * 241.28208 * 19 18 16 36 36 H 0.96700 * 117.00013 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1237 6 1 4.1472 1.8888 -0.6525 7 6 4.1434 0.8783 1.2279 8 7 5.4540 0.8803 1.3360 9 14 3.0965 0.1087 2.5700 10 1 2.8756 -1.3273 2.2633 11 1 3.7938 0.2347 3.8750 12 1 1.7878 0.8073 2.6386 13 8 1.6559 2.0917 -1.2407 14 6 0.4727 2.7254 -1.2559 15 8 -0.2188 2.7378 -0.2652 16 6 0.0074 3.4226 -2.5083 17 1 -0.0312 2.7213 -3.3419 18 6 0.9419 4.6060 -2.8439 19 6 -0.0083 5.6964 -3.3873 20 6 -1.4069 5.0440 -3.3184 21 1 -1.6635 4.5945 -4.2778 22 6 -2.4431 6.0648 -2.9246 23 8 -3.0305 5.9552 -1.8744 24 8 -2.7136 7.0957 -3.7404 25 8 -1.2899 4.0272 -2.2995 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 5.8772 0.4817 2.1126 32 1 1.6664 4.3166 -3.6052 33 1 1.4518 4.9564 -1.9465 34 1 0.0300 6.5850 -2.7572 35 1 0.2464 5.9461 -4.4173 36 1 -3.3863 7.7245 -3.4451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604981171.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:02 Heat of formation + Delta-G solvation = -240.732339 kcal Electronic energy + Delta-G solvation = -21620.723397 eV Core-core repulsion = 18069.572971 eV Total energy + Delta-G solvation = -3551.150425 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.03179 -41.34966 -39.88774 -37.71353 -37.15607 -35.58903 -33.99010 -33.35567 -31.67706 -29.79061 -26.81911 -24.79349 -23.52197 -22.75124 -22.29419 -21.48786 -19.58794 -19.00739 -18.57466 -18.22828 -17.99570 -17.48563 -16.95328 -16.47391 -16.32922 -16.06828 -15.35472 -15.07073 -14.89567 -14.56607 -14.13783 -13.89903 -13.75937 -13.26415 -13.20431 -13.13409 -12.87118 -12.85032 -12.61908 -12.56713 -12.05488 -12.01722 -11.74002 -11.56889 -11.53592 -11.28155 -11.17383 -10.99959 -10.75834 -8.46112 -6.53943 1.05240 1.17161 1.21228 1.23910 1.29920 1.38683 1.93238 2.17813 2.85939 2.94731 3.36105 3.56666 3.72146 3.87939 3.96971 4.03149 4.07082 4.15032 4.25766 4.35074 4.50334 4.54922 4.83415 4.90052 4.90832 4.92310 4.97773 4.99579 5.28892 5.32262 5.39862 5.55063 5.61938 6.12953 6.50223 6.83848 6.91217 7.10646 8.69336 Molecular weight = 272.12amu Principal moments of inertia in cm(-1) A = 0.033761 B = 0.004513 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.150230 B = 6202.427542 C = 6538.976372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.146 4.146 3 C 0.201 3.799 4 H 0.024 0.976 5 C -0.537 4.537 6 H 0.054 0.946 7 C 0.036 3.964 8 N -0.926 5.926 9 Si 0.931 3.069 10 H -0.248 1.248 11 H -0.284 1.284 12 H -0.263 1.263 13 O -0.340 6.340 14 C 0.449 3.551 15 O -0.531 6.531 16 C 0.088 3.912 17 H 0.155 0.845 18 C -0.140 4.140 19 C -0.126 4.126 20 C 0.074 3.926 21 H 0.160 0.840 22 C 0.489 3.511 23 O -0.546 6.546 24 O -0.494 6.494 25 O -0.362 6.362 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.039 0.961 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.275 0.725 32 H 0.133 0.867 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.145 0.855 36 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.283 8.597 -14.950 21.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.183 4.183 3 C 0.146 3.854 4 H 0.041 0.959 5 C -0.574 4.574 6 H 0.072 0.928 7 C -0.164 4.164 8 N -0.564 5.564 9 Si 0.757 3.243 10 H -0.173 1.173 11 H -0.210 1.210 12 H -0.187 1.187 13 O -0.256 6.256 14 C 0.292 3.708 15 O -0.420 6.420 16 C 0.030 3.970 17 H 0.172 0.828 18 C -0.178 4.178 19 C -0.163 4.163 20 C 0.016 3.984 21 H 0.177 0.823 22 C 0.332 3.668 23 O -0.436 6.436 24 O -0.308 6.308 25 O -0.281 6.281 26 H 0.066 0.934 27 H 0.095 0.905 28 H 0.059 0.941 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.151 0.849 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.163 0.837 36 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -13.320 8.184 -14.204 21.122 hybrid contribution -0.463 0.074 1.519 1.590 sum -13.783 8.258 -12.685 20.471 Atomic orbital electron populations 1.21818 0.94852 1.02047 1.01202 1.22277 0.96155 0.97408 1.02492 1.20692 0.94191 0.89756 0.80736 0.95858 1.20939 0.89329 1.39840 1.07317 0.92765 1.25455 0.95955 0.95608 0.99426 1.69936 1.10134 1.45405 1.30974 0.86111 0.79191 0.80488 0.78540 1.17339 1.21036 1.18724 1.86449 1.35222 1.62837 1.41133 1.23908 0.79804 0.76507 0.90599 1.90647 1.55878 1.58349 1.37139 1.22742 0.84147 0.97621 0.92498 0.82839 1.22986 0.98472 0.92694 1.03642 1.22953 0.89326 0.97822 1.06192 1.22838 0.94439 0.87335 0.93750 0.82337 1.23138 0.81428 0.81352 0.80913 1.90791 1.50960 1.75425 1.26437 1.84414 1.60217 1.36241 1.49969 1.89354 1.33462 1.50938 1.54390 0.93410 0.90457 0.94139 0.90064 0.92305 0.91517 0.84900 0.92071 0.90501 0.83725 0.70384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.49 8.57 71.98 0.62 -4.87 16 2 C -0.15 -6.43 5.14 30.59 0.16 -6.28 16 3 C 0.20 10.10 1.84 29.85 0.05 10.15 16 4 H 0.02 1.29 6.21 -2.39 -0.01 1.28 16 5 C -0.54 -30.98 9.48 25.60 0.24 -30.74 16 6 H 0.05 3.40 8.06 -2.91 -0.02 3.38 16 7 C 0.04 2.06 5.45 84.66 0.46 2.52 16 8 N -0.93 -56.03 13.96 21.45 0.30 -55.73 16 9 Si 0.93 44.50 24.41 68.60 1.67 46.17 16 10 H -0.25 -10.89 6.83 99.48 0.68 -10.21 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.26 -12.58 6.53 99.48 0.65 -11.93 16 13 O -0.34 -15.02 9.81 -51.38 -0.50 -15.53 16 14 C 0.45 17.79 5.65 71.24 0.40 18.19 16 15 O -0.53 -25.11 13.71 28.18 0.39 -24.73 16 16 C 0.09 2.34 3.83 30.35 0.12 2.46 16 17 H 0.15 2.80 8.14 -2.38 -0.02 2.78 16 18 C -0.14 -2.85 6.61 31.61 0.21 -2.64 16 19 C -0.13 -1.75 6.62 31.61 0.21 -1.54 16 20 C 0.07 1.34 3.83 30.35 0.12 1.46 16 21 H 0.16 1.46 8.14 -2.38 -0.02 1.44 16 22 C 0.49 10.25 7.57 71.24 0.54 10.79 16 23 O -0.55 -17.63 17.31 28.21 0.49 -17.14 16 24 O -0.49 -5.68 13.42 -51.35 -0.69 -6.37 16 25 O -0.36 -10.80 10.18 -121.26 -1.24 -12.04 16 26 H 0.05 1.80 6.06 -2.39 -0.01 1.79 16 27 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.04 1.68 7.80 -2.39 -0.02 1.66 16 29 H 0.08 3.37 8.14 -2.38 -0.02 3.35 16 30 H 0.06 2.65 3.21 -2.39 -0.01 2.64 16 31 H 0.28 15.42 8.31 -92.70 -0.77 14.65 16 32 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.06 1.61 7.86 -2.39 -0.02 1.59 16 34 H 0.08 1.21 7.86 -2.39 -0.02 1.19 16 35 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.43 1.64 9.10 -74.06 -0.67 0.97 16 Total: -1.00 -82.65 301.19 3.90 -78.75 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 0.36 Total: 7.10 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 3.13 Total: -0.50 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.30 Total: -55.73 kcal Atomic # 8 Polarization: -74.24 SS G_CDS: -1.55 Total: -75.80 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.67 Total: 46.17 kcal Total: -82.65 3.90 -78.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604981171.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.987 kcal (2) G-P(sol) polarization free energy of solvation -82.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds