Wall clock time and date at job start Mon Mar 30 2020 01:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35058 * 124.87814 * 2 1 4 4 C 1.35344 * 107.24545 * 180.16735 * 3 2 1 5 5 C 1.41562 * 105.50520 * 359.58745 * 4 3 2 6 6 C 1.47560 * 126.53181 * 180.24365 * 5 4 3 7 7 O 1.21589 * 119.99784 * 6.12986 * 6 5 4 8 8 N 1.34776 * 120.00162 * 186.13885 * 6 5 4 9 9 C 1.37042 * 119.99692 * 184.42718 * 8 6 5 10 10 H 1.07997 * 119.99433 * 227.60967 * 9 8 6 11 11 C 1.38949 * 120.00193 * 47.61220 * 9 8 6 12 12 N 1.31385 * 119.99944 * 20.58738 * 11 9 8 13 13 Si 1.86796 * 119.99739 * 200.58704 * 11 9 8 14 14 H 1.48507 * 109.47411 * 64.99143 * 13 11 9 15 15 H 1.48506 * 109.46936 * 184.98922 * 13 11 9 16 16 H 1.48500 * 109.47567 * 304.99046 * 13 11 9 17 17 C 1.39340 * 120.00093 * 4.41871 * 8 6 5 18 18 C 1.39088 * 119.69603 * 49.36283 * 17 8 6 19 19 C 1.38372 * 119.09945 * 179.97438 * 18 17 8 20 20 C 1.38835 * 118.49139 * 0.02562 * 19 18 17 21 21 C 1.38154 * 119.31543 * 359.97438 * 20 19 18 22 22 N 1.31875 * 120.85206 * 359.74468 * 21 20 19 23 23 N 1.28465 * 124.88015 * 179.69318 * 2 1 3 24 24 H 1.09006 * 109.46876 * 275.60921 * 1 2 3 25 25 H 1.08996 * 109.46932 * 35.60476 * 1 2 3 26 26 H 1.09000 * 109.47185 * 155.60836 * 1 2 3 27 27 H 1.07997 * 126.37975 * 0.02562 * 3 2 1 28 28 H 1.08004 * 127.25072 * 179.85090 * 4 3 2 29 29 H 0.97003 * 119.99385 * 184.88295 * 12 11 9 30 30 H 1.08003 * 120.45055 * 359.95974 * 18 17 8 31 31 H 1.08001 * 120.75943 * 180.02562 * 19 18 17 32 32 H 1.07999 * 120.34266 * 180.02562 * 20 19 18 33 33 H 1.08001 * 119.57213 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.1080 0.0000 4 6 3.5271 0.6980 -0.0038 5 6 3.4746 -0.7166 0.0038 6 6 4.6269 -1.6384 0.0084 7 8 5.7557 -1.1999 0.1181 8 7 4.4282 -2.9662 -0.1093 9 6 5.4888 -3.8288 -0.0141 10 1 5.6160 -4.6111 -0.7477 11 6 6.4005 -3.6969 1.0262 12 7 6.0623 -3.0486 2.1178 13 14 8.1068 -4.4413 0.8726 14 1 8.8484 -3.7586 -0.2180 15 1 8.8392 -4.2685 2.1529 16 1 7.9894 -5.8884 0.5609 17 6 3.1443 -3.4619 -0.3275 18 6 2.3553 -2.9128 -1.3327 19 6 1.0825 -3.4149 -1.5391 20 6 0.6406 -4.4526 -0.7295 21 6 1.4781 -4.9499 0.2502 22 7 2.6886 -4.4550 0.4203 23 7 2.1996 -1.0538 0.0056 24 1 -0.3633 0.1005 1.0228 25 1 -0.3633 0.8355 -0.5983 26 1 -0.3633 -0.9359 -0.4244 27 1 1.8903 2.1307 0.0004 28 1 4.4106 1.3193 -0.0071 29 1 6.7200 -2.8951 2.8140 30 1 2.7309 -2.1054 -1.9438 31 1 0.4472 -3.0088 -2.3123 32 1 -0.3473 -4.8673 -0.8648 33 1 1.1385 -5.7568 0.8827 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611470500.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:07 Heat of formation + Delta-G solvation = 127.065653 kcal Electronic energy + Delta-G solvation = -21122.137830 eV Core-core repulsion = 17958.830744 eV Total energy + Delta-G solvation = -3163.307086 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.13383 -39.54972 -37.79549 -34.35308 -33.13210 -31.91583 -31.63875 -30.16811 -28.96362 -27.29005 -25.00790 -23.02655 -22.49906 -21.62816 -20.84247 -19.29950 -17.52129 -17.21247 -16.12802 -15.97855 -15.63467 -15.22686 -14.55216 -14.06556 -13.94602 -13.60335 -13.34001 -13.07404 -12.83867 -12.56192 -12.44365 -12.29720 -12.23615 -11.46224 -11.21661 -10.83779 -10.74440 -10.42498 -10.27745 -9.18424 -9.01187 -8.75679 -8.66777 -8.51174 -8.38450 -8.17359 -7.07479 -6.17568 -3.96475 1.82929 2.11223 2.41317 2.77571 2.92390 3.36828 3.40966 3.44644 4.16924 4.52667 4.58761 4.69342 4.87131 5.07097 5.10431 5.22753 5.34251 5.41609 5.46807 5.51950 5.70992 5.80658 5.96663 6.10247 6.24923 6.37539 6.46341 6.80708 6.88068 6.93756 7.18079 7.42854 7.64132 8.20919 8.43344 8.65987 8.98913 9.17238 9.51111 9.99145 10.90182 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018919 B = 0.008551 C = 0.006361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.607278 B = 3273.581668 C = 4400.820137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.298 5.298 3 C -0.035 4.035 4 C -0.183 4.183 5 C -0.001 4.001 6 C 0.581 3.419 7 O -0.510 6.510 8 N -0.385 5.385 9 C -0.341 4.341 10 H 0.086 0.914 11 C 0.078 3.922 12 N -0.831 5.831 13 Si 0.918 3.082 14 H -0.271 1.271 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.375 3.625 18 C -0.140 4.140 19 C -0.077 4.077 20 C -0.220 4.220 21 C 0.107 3.893 22 N -0.479 5.479 23 N -0.250 5.250 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.173 0.827 28 H 0.156 0.844 29 H 0.269 0.731 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.509 5.540 -5.320 15.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.086 5.086 3 C -0.177 4.177 4 C -0.211 4.211 5 C -0.162 4.162 6 C 0.368 3.632 7 O -0.382 6.382 8 N -0.100 5.100 9 C -0.467 4.467 10 H 0.104 0.896 11 C -0.134 4.134 12 N -0.463 5.463 13 Si 0.744 3.256 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.199 1.199 17 C 0.146 3.854 18 C -0.165 4.165 19 C -0.104 4.104 20 C -0.241 4.241 21 C -0.053 4.053 22 N -0.193 5.193 23 N -0.085 5.085 24 H 0.096 0.904 25 H 0.106 0.894 26 H 0.112 0.888 27 H 0.190 0.810 28 H 0.174 0.826 29 H 0.079 0.921 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.054 4.599 -4.351 14.509 hybrid contribution 0.485 0.846 -0.390 1.050 sum -12.569 5.445 -4.741 14.495 Atomic orbital electron populations 1.22011 0.74380 1.04892 1.03640 1.45575 1.07335 1.03500 1.52156 1.22674 0.91225 0.93367 1.10481 1.21738 0.96885 0.93973 1.08545 1.22610 0.91105 0.94487 1.07976 1.16826 0.85853 0.80893 0.79668 1.90618 1.22992 1.75547 1.49078 1.40803 1.02696 1.04247 1.62260 1.18993 1.02119 1.14949 1.10616 0.89644 1.25348 0.99975 0.95404 0.92662 1.69920 1.34047 1.37531 1.04762 0.86186 0.82680 0.79036 0.77724 1.19617 1.21021 1.19872 1.18888 0.86425 0.90744 0.89323 1.21468 0.95805 1.00864 0.98398 1.20981 0.94945 0.96017 0.98417 1.21699 1.01036 1.00867 1.00538 1.22377 0.89228 0.97850 0.95797 1.67414 1.14389 1.12613 1.24852 1.74203 1.03285 1.11947 1.19035 0.90406 0.89438 0.88766 0.80967 0.82614 0.92129 0.86816 0.86659 0.86494 0.84167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.87 11.30 59.85 0.68 1.55 16 2 N -0.30 -4.55 3.70 -68.13 -0.25 -4.80 16 3 C -0.03 -0.50 11.46 -17.16 -0.20 -0.70 16 4 C -0.18 -3.43 10.81 -39.35 -0.43 -3.86 16 5 C 0.00 -0.02 6.02 -82.78 -0.50 -0.52 16 6 C 0.58 16.03 6.69 -12.46 -0.08 15.95 16 7 O -0.51 -15.37 15.35 5.29 0.08 -15.29 16 8 N -0.38 -10.75 2.65 -61.80 -0.16 -10.91 16 9 C -0.34 -10.04 8.85 -14.96 -0.13 -10.18 16 10 H 0.09 2.45 7.91 -52.49 -0.42 2.03 16 11 C 0.08 2.29 4.34 -17.48 -0.08 2.21 16 12 N -0.83 -25.61 12.38 55.49 0.69 -24.92 16 13 Si 0.92 22.52 29.60 -169.99 -5.03 17.48 16 14 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 17 C 0.38 9.21 5.56 -154.70 -0.86 8.35 16 18 C -0.14 -2.85 6.21 -39.22 -0.24 -3.09 16 19 C -0.08 -1.26 10.17 -39.31 -0.40 -1.66 16 20 C -0.22 -3.48 10.11 -39.39 -0.40 -3.87 16 21 C 0.11 2.02 11.18 -17.56 -0.20 1.82 16 22 N -0.48 -11.65 10.13 -12.35 -0.13 -11.78 16 23 N -0.25 -5.01 7.21 33.41 0.24 -4.77 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.16 2.75 8.06 -52.48 -0.42 2.32 16 29 H 0.27 7.84 8.31 -40.82 -0.34 7.50 16 30 H 0.11 2.31 7.03 -52.48 -0.37 1.94 16 31 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.14 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 293.01 15.07 4.42 4.42 Total: -1.00 -37.34 293.01 -6.28 -43.62 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -3.30 Total: 0.95 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -2.83 Total: 5.99 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.39 Total: -57.18 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.08 Total: -15.29 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.03 Total: 17.48 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -37.34 -6.28 -43.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611470500.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.687 kcal (2) G-P(sol) polarization free energy of solvation -37.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds