Wall clock time and date at job start Mon Mar 30 2020 01:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35058 * 124.87814 * 2 1 4 4 C 1.35344 * 107.24545 * 180.16735 * 3 2 1 5 5 C 1.41562 * 105.50520 * 359.58745 * 4 3 2 6 6 C 1.47560 * 126.53181 * 180.24365 * 5 4 3 7 7 O 1.21589 * 119.99784 * 6.12986 * 6 5 4 8 8 N 1.34776 * 120.00162 * 186.13885 * 6 5 4 9 9 C 1.37042 * 119.99692 * 184.42718 * 8 6 5 10 10 H 1.07997 * 119.99433 * 227.60967 * 9 8 6 11 11 C 1.38949 * 120.00193 * 47.61220 * 9 8 6 12 12 N 1.31385 * 119.99944 * 20.58738 * 11 9 8 13 13 Si 1.86796 * 119.99739 * 200.58704 * 11 9 8 14 14 H 1.48507 * 109.47411 * 64.99143 * 13 11 9 15 15 H 1.48506 * 109.46936 * 184.98922 * 13 11 9 16 16 H 1.48500 * 109.47567 * 304.99046 * 13 11 9 17 17 C 1.39340 * 120.00093 * 4.41871 * 8 6 5 18 18 C 1.39088 * 119.69603 * 49.36283 * 17 8 6 19 19 C 1.38372 * 119.09945 * 179.97438 * 18 17 8 20 20 C 1.38835 * 118.49139 * 0.02562 * 19 18 17 21 21 C 1.38154 * 119.31543 * 359.97438 * 20 19 18 22 22 N 1.31875 * 120.85206 * 359.74468 * 21 20 19 23 23 N 1.28465 * 124.88015 * 179.69318 * 2 1 3 24 24 H 1.09006 * 109.46876 * 275.60921 * 1 2 3 25 25 H 1.08996 * 109.46932 * 35.60476 * 1 2 3 26 26 H 1.09000 * 109.47185 * 155.60836 * 1 2 3 27 27 H 1.07997 * 126.37975 * 0.02562 * 3 2 1 28 28 H 1.08004 * 127.25072 * 179.85090 * 4 3 2 29 29 H 0.97003 * 119.99385 * 184.88295 * 12 11 9 30 30 H 1.08003 * 120.45055 * 359.95974 * 18 17 8 31 31 H 1.08001 * 120.75943 * 180.02562 * 19 18 17 32 32 H 1.07999 * 120.34266 * 180.02562 * 20 19 18 33 33 H 1.08001 * 119.57213 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.1080 0.0000 4 6 3.5271 0.6980 -0.0038 5 6 3.4746 -0.7166 0.0038 6 6 4.6269 -1.6384 0.0084 7 8 5.7557 -1.1999 0.1181 8 7 4.4282 -2.9662 -0.1093 9 6 5.4888 -3.8288 -0.0141 10 1 5.6160 -4.6111 -0.7477 11 6 6.4005 -3.6969 1.0262 12 7 6.0623 -3.0486 2.1178 13 14 8.1068 -4.4413 0.8726 14 1 8.8484 -3.7586 -0.2180 15 1 8.8392 -4.2685 2.1529 16 1 7.9894 -5.8884 0.5609 17 6 3.1443 -3.4619 -0.3275 18 6 2.3553 -2.9128 -1.3327 19 6 1.0825 -3.4149 -1.5391 20 6 0.6406 -4.4526 -0.7295 21 6 1.4781 -4.9499 0.2502 22 7 2.6886 -4.4550 0.4203 23 7 2.1996 -1.0538 0.0056 24 1 -0.3633 0.1005 1.0228 25 1 -0.3633 0.8355 -0.5983 26 1 -0.3633 -0.9359 -0.4244 27 1 1.8903 2.1307 0.0004 28 1 4.4106 1.3193 -0.0071 29 1 6.7200 -2.8951 2.8140 30 1 2.7309 -2.1054 -1.9438 31 1 0.4472 -3.0088 -2.3123 32 1 -0.3473 -4.8673 -0.8648 33 1 1.1385 -5.7568 0.8827 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611470500.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:07 Heat of formation + Delta-G solvation = 99.763492 kcal Electronic energy + Delta-G solvation = -21123.321740 eV Core-core repulsion = 17958.830744 eV Total energy + Delta-G solvation = -3164.490996 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.48717 -41.21497 -39.62316 -36.29424 -34.54746 -33.76766 -33.15979 -31.54533 -30.60193 -28.62584 -26.83346 -24.65231 -24.01919 -23.23687 -22.11276 -21.00941 -19.33072 -18.76328 -17.55071 -17.41272 -17.26113 -16.58217 -16.46067 -15.96532 -15.57437 -15.17064 -14.79415 -14.54557 -14.34254 -13.98729 -13.77211 -13.56389 -13.38689 -13.24900 -12.97147 -12.77893 -12.59593 -12.19064 -11.88206 -11.07255 -10.77338 -10.56081 -10.29993 -9.99941 -9.89215 -9.82981 -8.89520 -8.33326 -6.18630 0.28661 0.68354 0.99139 1.31824 1.36330 1.45638 1.48405 1.83691 2.26909 2.64918 2.84839 3.07203 3.36362 3.54087 3.93184 4.07261 4.10903 4.21841 4.45527 4.46280 4.48672 4.54794 4.73200 4.76963 4.87041 4.92620 5.02105 5.35371 5.37576 5.43566 5.47381 5.95770 6.08908 6.16227 6.72711 6.84789 7.12853 7.26442 7.68141 7.98817 8.74331 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018919 B = 0.008551 C = 0.006361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.607278 B = 3273.581668 C = 4400.820137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.285 5.285 3 C 0.003 3.997 4 C -0.215 4.215 5 C -0.050 4.050 6 C 0.567 3.433 7 O -0.566 6.566 8 N -0.407 5.407 9 C -0.362 4.362 10 H 0.076 0.924 11 C 0.027 3.973 12 N -0.876 5.876 13 Si 0.982 3.018 14 H -0.273 1.273 15 H -0.277 1.277 16 H -0.255 1.255 17 C 0.337 3.663 18 C -0.137 4.137 19 C -0.062 4.062 20 C -0.184 4.184 21 C 0.086 3.914 22 N -0.533 5.533 23 N -0.260 5.260 24 H 0.093 0.907 25 H 0.134 0.866 26 H 0.098 0.902 27 H 0.233 0.767 28 H 0.151 0.849 29 H 0.265 0.735 30 H 0.105 0.895 31 H 0.166 0.834 32 H 0.173 0.827 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.992 6.131 -6.662 20.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.073 5.073 3 C -0.140 4.140 4 C -0.243 4.243 5 C -0.208 4.208 6 C 0.356 3.644 7 O -0.443 6.443 8 N -0.122 5.122 9 C -0.489 4.489 10 H 0.094 0.906 11 C -0.180 4.180 12 N -0.510 5.510 13 Si 0.804 3.196 14 H -0.198 1.198 15 H -0.202 1.202 16 H -0.179 1.179 17 C 0.110 3.890 18 C -0.161 4.161 19 C -0.089 4.089 20 C -0.204 4.204 21 C -0.072 4.072 22 N -0.247 5.247 23 N -0.097 5.097 24 H 0.112 0.888 25 H 0.152 0.848 26 H 0.117 0.883 27 H 0.250 0.750 28 H 0.169 0.831 29 H 0.074 0.926 30 H 0.123 0.877 31 H 0.184 0.816 32 H 0.190 0.810 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -17.610 5.136 -5.715 19.213 hybrid contribution 1.462 0.662 -0.067 1.606 sum -16.148 5.798 -5.783 18.105 Atomic orbital electron populations 1.22598 0.70465 1.07268 1.05771 1.46195 1.09375 1.02743 1.48999 1.23345 0.89103 0.95310 1.06252 1.21931 0.99271 0.92414 1.10689 1.22093 0.91025 0.95184 1.12466 1.17516 0.86948 0.81475 0.78482 1.90525 1.25296 1.76621 1.51904 1.40949 1.04073 1.04380 1.62835 1.19150 1.04234 1.15084 1.10417 0.90580 1.26294 1.03755 0.95862 0.92085 1.70035 1.35000 1.40243 1.05700 0.85215 0.77661 0.78965 0.77715 1.19820 1.20202 1.17938 1.18983 0.86300 0.92350 0.91387 1.21425 0.97069 1.00546 0.97100 1.21523 0.93337 0.95151 0.98841 1.22243 1.02203 0.98661 0.97315 1.22986 0.88098 0.98673 0.97431 1.67243 1.17329 1.13460 1.26627 1.74069 1.02420 1.13835 1.19353 0.88830 0.84757 0.88335 0.75024 0.83105 0.92562 0.87721 0.81629 0.80996 0.81630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.02 11.30 127.77 1.44 2.47 16 2 N -0.28 -7.70 3.70 -369.46 -1.37 -9.07 16 3 C 0.00 0.09 11.46 83.53 0.96 1.04 16 4 C -0.21 -8.15 10.81 22.42 0.24 -7.91 16 5 C -0.05 -2.37 6.02 42.42 0.26 -2.12 16 6 C 0.57 33.72 6.69 86.70 0.58 34.30 16 7 O -0.57 -37.27 15.35 -4.00 -0.06 -37.33 16 8 N -0.41 -24.29 2.65 -467.70 -1.24 -25.52 16 9 C -0.36 -22.93 8.85 84.05 0.74 -22.18 16 10 H 0.08 4.71 7.91 -2.91 -0.02 4.69 16 11 C 0.03 1.66 4.34 84.93 0.37 2.03 16 12 N -0.88 -57.88 12.38 21.66 0.27 -57.61 16 13 Si 0.98 48.96 29.60 68.60 2.03 50.99 16 14 H -0.27 -13.50 7.11 99.48 0.71 -12.80 16 15 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 16 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 17 C 0.34 17.09 5.56 132.94 0.74 17.83 16 18 C -0.14 -5.47 6.21 22.51 0.14 -5.33 16 19 C -0.06 -1.76 10.17 22.44 0.23 -1.53 16 20 C -0.18 -4.89 10.11 22.39 0.23 -4.66 16 21 C 0.09 3.10 11.18 84.67 0.95 4.04 16 22 N -0.53 -26.46 10.13 -192.99 -1.95 -28.41 16 23 N -0.26 -10.22 7.21 -48.21 -0.35 -10.56 16 24 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.23 2.96 8.06 -2.91 -0.02 2.93 16 28 H 0.15 5.63 8.06 -2.91 -0.02 5.60 16 29 H 0.27 16.61 8.31 -92.71 -0.77 15.84 16 30 H 0.10 4.31 7.03 -2.91 -0.02 4.29 16 31 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 32 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 33 H 0.17 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -94.43 293.01 5.33 -89.09 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 1.13 Total: 10.43 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 6.87 Total: 17.99 kcal Atomic # 7 Polarization: -126.53 SS G_CDS: -4.64 Total: -131.17 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -0.06 Total: -37.33 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 2.03 Total: 50.99 kcal Total: -94.43 5.33 -89.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611470500.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.857 kcal (2) G-P(sol) polarization free energy of solvation -94.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds