Wall clock time and date at job start Mon Mar 30 2020 00:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31365 * 1 3 3 Si 1.86804 * 120.00067 * 2 1 4 4 H 1.48501 * 109.46856 * 92.22446 * 3 2 1 5 5 H 1.48497 * 109.47041 * 212.22480 * 3 2 1 6 6 H 1.48500 * 109.46979 * 332.22650 * 3 2 1 7 7 C 1.39042 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00007 * 339.53528 * 7 2 1 9 9 N 1.36866 * 120.00144 * 159.52446 * 7 2 1 10 10 C 1.34771 * 119.99540 * 128.29513 * 9 7 2 11 11 O 1.21632 * 119.99905 * 184.81720 * 10 9 7 12 12 C 1.47504 * 120.00533 * 4.81571 * 10 9 7 13 13 C 1.40953 * 119.82814 * 327.53343 * 12 10 9 14 14 N 1.30551 * 122.25339 * 179.97438 * 13 12 10 15 15 C 1.33979 * 121.39366 * 0.02562 * 14 13 12 16 16 C 1.38162 * 135.89041 * 179.97438 * 15 14 13 17 17 N 1.34299 * 107.00671 * 180.02562 * 16 15 14 18 18 H 0.96994 * 123.97173 * 180.02562 * 17 16 15 19 19 N 1.28504 * 112.05076 * 0.02562 * 17 16 15 20 20 C 1.31963 * 110.68742 * 359.97438 * 19 17 16 21 21 C 1.38802 * 119.83325 * 147.25246 * 12 10 9 22 22 C 1.46494 * 120.00132 * 308.30104 * 9 7 2 23 23 C 1.53003 * 117.50048 * 2.52270 * 22 9 7 24 24 C 1.53004 * 117.49588 * 293.90008 * 22 9 7 25 25 H 0.97003 * 120.00074 * 359.97438 * 1 2 3 26 26 H 1.07995 * 118.87129 * 359.97074 * 13 12 10 27 27 H 1.07998 * 126.49510 * 0.05378 * 16 15 14 28 28 H 1.08000 * 121.05557 * 0.02562 * 21 12 10 29 29 H 1.08997 * 115.55389 * 148.23626 * 22 9 7 30 30 H 1.09002 * 117.49944 * 0.02562 * 23 22 9 31 31 H 1.08990 * 117.49974 * 145.02454 * 23 22 9 32 32 H 1.09002 * 117.49601 * 214.97975 * 24 22 9 33 33 H 1.09001 * 117.49991 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.5422 2.0192 1.3990 5 1 3.5209 1.4542 -0.7466 6 1 1.4224 2.6658 -0.6524 7 6 2.0089 -1.2041 -0.0005 8 1 1.5200 -2.1101 0.3261 9 7 3.3127 -1.2414 -0.4152 10 6 4.2518 -1.8119 0.3652 11 8 5.4226 -1.7679 0.0385 12 6 3.8599 -2.4895 1.6154 13 6 2.7555 -2.0168 2.3526 14 7 2.3672 -2.5804 3.4643 15 6 3.0049 -3.6465 3.9661 16 6 2.8629 -4.4551 5.0774 17 7 3.8371 -5.3776 5.0191 18 1 3.9652 -6.0733 5.6827 19 7 4.5797 -5.2300 3.9808 20 6 4.1715 -4.2044 3.2576 21 6 4.5770 -3.5930 2.0567 22 6 3.6874 -0.6611 -1.7071 23 6 2.5868 0.0240 -2.5196 24 6 3.1380 -1.3309 -2.9683 25 1 -0.4850 0.8401 0.0004 26 1 2.2120 -1.1589 1.9853 27 1 2.1106 -4.3629 5.8469 28 1 5.4225 -3.9675 1.4988 29 1 4.6899 -0.2366 -1.7587 30 1 1.5840 0.0434 -2.0928 31 1 2.8652 0.8997 -3.1059 32 1 3.7791 -1.3465 -3.8497 33 1 2.4982 -2.2035 -2.8367 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625755444.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:52 Heat of formation + Delta-G solvation = 103.268802 kcal Electronic energy + Delta-G solvation = -20613.891582 eV Core-core repulsion = 17449.552587 eV Total energy + Delta-G solvation = -3164.338995 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.59785 -41.20206 -39.12878 -38.04536 -35.22744 -33.95393 -33.76577 -31.98106 -30.90330 -27.17218 -26.76422 -24.65904 -23.43253 -22.82524 -21.77135 -21.15410 -19.77838 -19.18916 -18.88693 -17.65817 -17.23617 -16.80367 -16.44502 -16.29261 -15.83783 -15.68375 -14.93719 -14.62806 -14.46121 -14.05760 -13.83948 -13.79165 -13.36008 -13.03781 -12.72651 -12.49496 -12.20315 -11.89536 -11.79094 -11.67621 -11.10906 -11.04586 -10.56263 -10.11628 -9.89361 -9.42359 -9.04872 -8.49692 -6.23890 -0.62795 0.29488 1.32270 1.38532 1.43800 1.53852 1.86126 1.95742 2.26001 2.40740 2.73264 2.90255 3.04189 3.26752 3.49229 3.76658 3.99781 4.00973 4.09815 4.20476 4.30913 4.35944 4.52859 4.79668 4.82213 4.87902 4.93938 5.15289 5.22034 5.42182 5.54519 5.70083 6.06184 6.10227 6.23197 6.76063 6.91767 7.03565 7.31135 7.69960 8.59326 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.025386 B = 0.006496 C = 0.005678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.696698 B = 4308.996834 C = 4930.448006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.065 3.935 3 Si 0.902 3.098 4 H -0.285 1.285 5 H -0.237 1.237 6 H -0.270 1.270 7 C -0.354 4.354 8 H 0.075 0.925 9 N -0.436 5.436 10 C 0.532 3.468 11 O -0.606 6.606 12 C -0.149 4.149 13 C 0.157 3.843 14 N -0.466 5.466 15 C -0.028 4.028 16 C 0.040 3.960 17 N -0.303 5.303 18 H 0.474 0.526 19 N -0.302 5.302 20 C -0.018 4.018 21 C 0.004 3.996 22 C 0.049 3.951 23 C -0.189 4.189 24 C -0.166 4.166 25 H 0.284 0.716 26 H 0.181 0.819 27 H 0.245 0.755 28 H 0.144 0.856 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.302 -5.929 6.836 9.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.212 1.212 5 H -0.160 1.160 6 H -0.195 1.195 7 C -0.481 4.481 8 H 0.092 0.908 9 N -0.154 5.154 10 C 0.322 3.678 11 O -0.492 6.492 12 C -0.158 4.158 13 C -0.023 4.023 14 N -0.175 5.175 15 C -0.152 4.152 16 C -0.117 4.117 17 N -0.014 5.014 18 H 0.325 0.675 19 N -0.141 5.141 20 C -0.165 4.165 21 C -0.026 4.026 22 C -0.055 4.055 23 C -0.226 4.226 24 C -0.204 4.204 25 H 0.094 0.906 26 H 0.198 0.802 27 H 0.261 0.739 28 H 0.162 0.838 29 H 0.134 0.866 30 H 0.120 0.880 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.804 -6.481 7.267 10.454 hybrid contribution 0.106 0.754 -0.300 0.819 sum 3.909 -5.727 6.967 9.829 Atomic orbital electron populations 1.69812 1.07403 1.29627 1.44132 1.25814 0.95204 1.00500 0.92830 0.86531 0.81672 0.80429 0.78880 1.21182 1.16017 1.19495 1.18585 0.86049 0.95606 1.47900 0.90757 1.42984 1.07055 1.51467 1.13919 1.18378 0.84616 0.81394 0.83426 1.90622 1.18788 1.64708 1.75113 1.20554 0.99100 0.98558 0.97604 1.24008 0.91448 0.99157 0.87651 1.67341 1.29220 1.08603 1.12375 1.20891 0.96935 0.98484 0.98911 1.23060 0.97254 0.91282 1.00106 1.43384 1.17818 1.23013 1.17144 0.67502 1.73478 1.20447 1.20106 1.00028 1.21192 0.99508 0.97241 0.98519 1.20597 0.97605 0.92273 0.92116 1.21893 0.97628 1.03301 0.82678 1.23513 0.99421 0.96933 1.02775 1.23278 1.03351 0.96025 0.97744 0.90590 0.80231 0.73886 0.83792 0.86619 0.87997 0.86728 0.86198 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.38 13.95 21.68 0.30 -45.08 16 2 C 0.06 3.20 3.04 84.96 0.26 3.45 16 3 Si 0.90 39.48 25.34 68.60 1.74 41.22 16 4 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.24 -10.09 5.31 99.48 0.53 -9.56 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.35 -17.77 5.69 84.10 0.48 -17.29 16 8 H 0.07 4.14 7.08 -2.91 -0.02 4.12 16 9 N -0.44 -20.75 2.20 -616.74 -1.36 -22.11 16 10 C 0.53 25.75 7.38 86.69 0.64 26.39 16 11 O -0.61 -30.98 16.53 -4.13 -0.07 -31.04 16 12 C -0.15 -6.71 5.57 -20.03 -0.11 -6.82 16 13 C 0.16 7.14 9.06 85.55 0.78 7.91 16 14 N -0.47 -19.48 10.42 -184.34 -1.92 -21.40 16 15 C -0.03 -0.99 7.55 41.23 0.31 -0.68 16 16 C 0.04 0.86 12.13 84.30 1.02 1.88 16 17 N -0.30 -5.61 6.68 -56.22 -0.38 -5.99 16 18 H 0.47 3.37 8.96 -219.98 -1.97 1.40 16 19 N -0.30 -8.81 12.21 -48.78 -0.60 -9.41 16 20 C -0.02 -0.67 7.54 42.16 0.32 -0.35 16 21 C 0.00 0.16 9.76 23.01 0.22 0.39 16 22 C 0.05 2.07 4.05 44.99 0.18 2.25 16 23 C -0.19 -7.22 6.93 30.60 0.21 -7.01 16 24 C -0.17 -6.01 10.37 30.60 0.32 -5.70 16 25 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 26 H 0.18 8.84 4.98 -2.91 -0.01 8.82 16 27 H 0.25 2.69 8.06 -2.91 -0.02 2.67 16 28 H 0.14 5.54 7.98 -2.91 -0.02 5.52 16 29 H 0.12 4.85 7.76 -2.39 -0.02 4.84 16 30 H 0.10 4.48 4.93 -2.39 -0.01 4.47 16 31 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 32 H 0.12 3.50 8.14 -2.39 -0.02 3.48 16 33 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -67.97 278.39 1.38 -66.59 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -0.97 Total: 22.78 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 4.63 Total: 4.43 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -3.94 Total: -103.98 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -0.07 Total: -31.04 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 1.74 Total: 41.22 kcal Total: -67.97 1.38 -66.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625755444.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.858 kcal (2) G-P(sol) polarization free energy of solvation -67.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds