Wall clock time and date at job start Mon Mar 30 2020 00:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86799 * 119.99866 * 2 1 4 4 H 1.48495 * 109.47246 * 240.00352 * 3 2 1 5 5 H 1.48504 * 109.47385 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46878 * 120.00502 * 3 2 1 7 7 C 1.40028 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99721 * 179.97438 * 7 2 1 9 9 C 1.41336 * 119.99982 * 359.97438 * 7 2 1 10 10 C 1.40617 * 119.78602 * 179.97438 * 9 7 2 11 11 C 1.38302 * 119.12993 * 179.97438 * 10 9 7 12 12 C 1.38699 * 118.66774 * 0.02562 * 11 10 9 13 13 C 1.39632 * 119.49520 * 359.97438 * 12 11 10 14 14 N 1.39277 * 119.57267 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99995 * 174.63595 * 14 13 12 16 16 O 1.21279 * 119.99699 * 5.14095 * 15 14 13 17 17 C 1.50695 * 120.00026 * 185.14570 * 15 14 13 18 18 C 1.50700 * 109.47100 * 179.97438 * 17 15 14 19 19 C 1.39873 * 125.89404 * 124.99727 * 18 17 15 20 20 C 1.35317 * 107.91863 * 180.02562 * 19 18 17 21 21 N 1.34946 * 107.74850 * 0.02562 * 20 19 18 22 22 H 0.97002 * 126.04424 * 179.97438 * 21 20 19 23 23 N 1.30833 * 125.90048 * 304.69374 * 18 17 15 24 24 N 1.31927 * 120.85397 * 0.25645 * 13 12 11 25 25 H 0.97003 * 119.99691 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.43407 * 359.97438 * 10 9 7 27 27 H 1.07992 * 120.66725 * 179.97438 * 11 10 9 28 28 H 1.07999 * 120.25309 * 180.02562 * 12 11 10 29 29 H 0.96997 * 119.99790 * 354.63583 * 14 13 12 30 30 H 1.08994 * 109.47455 * 299.99857 * 17 15 14 31 31 H 1.09007 * 109.47111 * 60.00019 * 17 15 14 32 32 H 1.07996 * 126.04157 * 0.03081 * 19 18 17 33 33 H 1.07999 * 126.12944 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2764 2.7465 0.0006 6 1 3.0952 1.6963 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0010 9 6 1.3009 -2.4367 -0.0005 10 6 2.0085 -3.6518 -0.0016 11 6 1.3033 -4.8416 -0.0011 12 6 -0.0829 -4.7934 0.0000 13 6 -0.7278 -3.5549 0.0010 14 7 -2.1196 -3.5047 0.0016 15 6 -2.7511 -2.3191 0.1117 16 8 -2.1108 -1.2892 0.1164 17 6 -4.2528 -2.2733 0.2290 18 6 -4.7046 -0.8398 0.3390 19 6 -5.6392 -0.2088 -0.4886 20 6 -5.7708 1.0706 -0.0680 21 7 -4.9482 1.2433 0.9877 22 1 -4.8332 2.0629 1.4936 23 7 -4.2945 0.0278 1.2283 24 7 -0.0357 -2.4317 -0.0041 25 1 -0.4850 0.8401 0.0004 26 1 3.0885 -3.6560 -0.0029 27 1 1.8215 -5.7890 -0.0023 28 1 -0.6591 -5.7069 0.0009 29 1 -2.6345 -4.3230 -0.0773 30 1 -4.7004 -2.7289 -0.6542 31 1 -4.5647 -2.8214 1.1182 32 1 -6.1632 -0.6625 -1.3167 33 1 -6.4176 1.8197 -0.5004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001636654335.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:27 Heat of formation + Delta-G solvation = 75.628525 kcal Electronic energy + Delta-G solvation = -20242.662923 eV Core-core repulsion = 17077.125356 eV Total energy + Delta-G solvation = -3165.537567 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.98957 -40.76378 -39.13074 -35.86986 -34.77603 -33.75291 -32.19060 -31.11470 -30.73787 -29.22538 -27.36767 -24.05790 -23.14972 -22.34724 -21.31632 -20.30000 -19.45170 -18.91321 -17.88074 -17.49226 -16.49167 -16.23706 -16.13667 -15.52982 -15.29748 -15.04532 -14.64115 -14.31259 -14.24642 -13.95264 -13.74505 -13.40184 -12.95027 -12.74238 -12.69216 -12.56699 -12.30795 -11.80114 -11.45314 -11.39986 -10.81780 -10.55972 -10.25217 -9.86751 -9.52955 -9.01900 -8.75679 -8.02815 -6.40566 0.96390 1.13923 1.28714 1.34964 1.46770 1.51146 1.86893 2.16509 2.24328 2.26460 2.58175 3.01609 3.77002 4.00931 4.09923 4.20953 4.42418 4.45639 4.64252 4.79209 4.86098 4.93846 4.95690 4.97984 5.12002 5.19572 5.29669 5.71006 5.79943 5.91965 5.95536 6.16462 6.41928 6.59745 6.79194 6.89217 6.92464 7.11228 7.83839 8.39389 8.57550 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.015100 B = 0.007356 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.864285 B = 3805.546627 C = 5530.369028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.683 5.683 2 C 0.009 3.991 3 Si 0.972 3.028 4 H -0.258 1.258 5 H -0.278 1.278 6 H -0.260 1.260 7 C -0.469 4.469 8 H 0.084 0.916 9 C 0.237 3.763 10 C -0.332 4.332 11 C -0.035 4.035 12 C -0.345 4.345 13 C 0.350 3.650 14 N -0.656 5.656 15 C 0.456 3.544 16 O -0.446 6.446 17 C -0.047 4.047 18 C 0.070 3.930 19 C -0.285 4.285 20 C 0.063 3.937 21 N -0.481 5.481 22 H 0.445 0.555 23 N -0.318 5.318 24 N -0.509 5.509 25 H 0.265 0.735 26 H 0.102 0.898 27 H 0.137 0.863 28 H 0.134 0.866 29 H 0.422 0.578 30 H 0.144 0.856 31 H 0.124 0.876 32 H 0.171 0.829 33 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.330 -0.692 -1.218 14.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.302 5.302 2 C -0.216 4.216 3 Si 0.793 3.207 4 H -0.182 1.182 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.500 4.500 8 H 0.102 0.898 9 C 0.111 3.889 10 C -0.355 4.355 11 C -0.060 4.060 12 C -0.371 4.371 13 C 0.111 3.889 14 N -0.307 5.307 15 C 0.238 3.762 16 O -0.311 6.311 17 C -0.088 4.088 18 C -0.098 4.098 19 C -0.314 4.314 20 C -0.085 4.085 21 N -0.190 5.190 22 H 0.290 0.710 23 N -0.142 5.142 24 N -0.229 5.229 25 H 0.076 0.924 26 H 0.120 0.880 27 H 0.154 0.846 28 H 0.152 0.848 29 H 0.260 0.740 30 H 0.162 0.838 31 H 0.142 0.858 32 H 0.189 0.811 33 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -13.821 1.271 -0.209 13.881 hybrid contribution 0.412 -0.180 -0.379 0.588 sum -13.409 1.090 -0.588 13.466 Atomic orbital electron populations 1.70547 1.07067 1.27586 1.25014 1.27036 0.96022 1.03924 0.94651 0.85432 0.78630 0.76680 0.79954 1.18220 1.20247 1.18484 1.19843 0.94345 0.90516 1.45275 0.89765 1.18879 0.88108 0.93332 0.88579 1.21791 0.99106 0.93924 1.20721 1.21037 0.93689 0.97226 0.93998 1.21004 0.95130 0.95850 1.25070 1.19205 0.85522 0.90966 0.93247 1.43411 1.03349 1.10613 1.73294 1.21580 0.91197 0.84312 0.79067 1.91178 1.66795 1.32491 1.40625 1.20114 0.90211 0.91207 1.07282 1.22029 0.96594 0.96062 0.95088 1.21761 1.07419 0.95252 1.06954 1.23255 0.95745 0.99097 0.90364 1.46457 1.33658 1.11682 1.27238 0.71007 1.77418 1.18820 0.92184 1.25786 1.68683 1.07231 1.25601 1.21338 0.92424 0.87963 0.84565 0.84807 0.74002 0.83805 0.85813 0.81123 0.76424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -41.36 9.00 21.84 0.20 -41.17 16 2 C 0.01 0.53 5.50 85.29 0.47 0.99 16 3 Si 0.97 42.70 29.56 68.60 2.03 44.73 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 7 C -0.47 -27.82 9.14 23.47 0.21 -27.61 16 8 H 0.08 4.67 7.85 -2.91 -0.02 4.65 16 9 C 0.24 14.21 6.55 40.21 0.26 14.47 16 10 C -0.33 -17.42 9.83 22.87 0.22 -17.19 16 11 C -0.04 -1.58 10.15 22.40 0.23 -1.35 16 12 C -0.35 -15.07 9.95 22.72 0.23 -14.85 16 13 C 0.35 17.41 7.43 133.23 0.99 18.40 16 14 N -0.66 -25.56 5.38 -308.37 -1.66 -27.22 16 15 C 0.46 18.85 7.78 87.66 0.68 19.53 16 16 O -0.45 -24.02 11.35 -3.03 -0.03 -24.06 16 17 C -0.05 -1.29 6.28 29.10 0.18 -1.11 16 18 C 0.07 2.25 6.01 43.10 0.26 2.51 16 19 C -0.28 -7.04 10.72 21.99 0.24 -6.80 16 20 C 0.06 1.33 11.99 83.54 1.00 2.33 16 21 N -0.48 -13.11 7.36 -57.59 -0.42 -13.54 16 22 H 0.45 9.40 8.96 -213.32 -1.91 7.49 16 23 N -0.32 -11.91 12.06 -47.38 -0.57 -12.49 16 24 N -0.51 -30.32 5.74 -186.36 -1.07 -31.39 16 25 H 0.27 15.47 8.29 -92.71 -0.77 14.70 16 26 H 0.10 5.01 8.06 -2.91 -0.02 4.98 16 27 H 0.14 4.88 8.06 -2.91 -0.02 4.86 16 28 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 29 H 0.42 11.52 8.70 -92.71 -0.81 10.71 16 30 H 0.14 2.71 8.12 -2.39 -0.02 2.69 16 31 H 0.12 2.81 8.14 -2.38 -0.02 2.79 16 32 H 0.17 3.08 8.06 -2.91 -0.02 3.05 16 33 H 0.22 2.25 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -86.52 293.44 1.89 -84.63 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: -1.55 Total: 31.19 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 4.98 Total: -10.68 kcal Atomic # 7 Polarization: -122.28 SS G_CDS: -3.53 Total: -125.81 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.03 Total: -24.06 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -86.52 1.89 -84.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001636654335.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.255 kcal (2) G-P(sol) polarization free energy of solvation -86.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds