Wall clock time and date at job start Mon Mar 30 2020 01:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33313 * 126.10640 * 2 1 4 4 C 1.30855 * 109.69116 * 179.97438 * 3 2 1 5 5 N 1.34502 * 109.17121 * 359.72274 * 4 3 2 6 6 H 0.97003 * 126.47569 * 180.27292 * 5 4 3 7 7 C 1.36694 * 126.11126 * 179.97438 * 2 1 3 8 8 C 1.46706 * 126.84996 * 0.02562 * 7 2 1 9 9 O 1.21680 * 120.00100 * 0.02562 * 8 7 2 10 10 N 1.34783 * 120.00190 * 179.97438 * 8 7 2 11 11 C 1.39144 * 119.99916 * 185.59151 * 10 8 7 12 12 C 1.39704 * 119.57947 * 18.96219 * 11 10 8 13 13 C 1.38643 * 119.49497 * 180.02562 * 12 11 10 14 14 C 1.38355 * 118.66986 * 0.02562 * 13 12 11 15 15 C 1.40577 * 119.13738 * 359.97438 * 14 13 12 16 16 C 1.41337 * 119.78573 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99776 * 8.93072 * 16 15 14 18 18 C 1.40018 * 119.99877 * 188.93347 * 16 15 14 19 19 N 1.30750 * 120.00150 * 196.07453 * 18 16 15 20 20 Si 1.86798 * 120.00144 * 16.07085 * 18 16 15 21 21 H 1.48498 * 109.47369 * 270.00155 * 20 18 16 22 22 H 1.48498 * 109.47128 * 30.00187 * 20 18 16 23 23 H 1.48505 * 109.47076 * 150.00261 * 20 18 16 24 24 N 1.31925 * 119.57516 * 199.24095 * 11 10 8 25 25 H 1.09004 * 109.47360 * 269.99997 * 1 2 3 26 26 H 1.08993 * 109.47422 * 30.00463 * 1 2 3 27 27 H 1.09005 * 109.46879 * 150.01001 * 1 2 3 28 28 H 1.08001 * 125.41676 * 179.97438 * 4 3 2 29 29 H 0.97003 * 119.99658 * 5.60127 * 10 8 7 30 30 H 1.07999 * 120.25403 * 359.97438 * 12 11 10 31 31 H 1.07999 * 120.66587 * 179.97438 * 13 12 11 32 32 H 1.08005 * 120.42987 * 180.02562 * 14 13 12 33 33 H 0.97003 * 119.99317 * 354.92462 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7073 0.0006 5 7 3.6125 -0.6362 0.0071 6 1 4.4193 -1.1746 0.0126 7 6 2.3126 -1.1043 0.0005 8 6 1.8827 -2.5070 0.0006 9 8 0.6969 -2.7799 -0.0003 10 7 2.8012 -3.4934 0.0006 11 6 2.3977 -4.8198 -0.1167 12 6 1.1292 -5.1124 -0.6237 13 6 0.7286 -6.4347 -0.7394 14 6 1.6046 -7.4305 -0.3454 15 6 2.8676 -7.0717 0.1570 16 6 3.7730 -8.0778 0.5639 17 1 3.5561 -9.1153 0.3569 18 6 4.9512 -7.7293 1.2355 19 7 5.9271 -8.5938 1.3350 20 14 5.1288 -6.0295 1.9893 21 1 5.7191 -5.1038 0.9894 22 1 3.7927 -5.5280 2.3999 23 1 6.0158 -6.1052 3.1779 24 7 3.2157 -5.7848 0.2574 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3633 -0.8901 -0.5137 28 1 4.3969 1.3747 0.0003 29 1 3.7436 -3.2785 0.0825 30 1 0.4653 -4.3147 -0.9225 31 1 -0.2479 -6.6824 -1.1284 32 1 1.3221 -8.4700 -0.4235 33 1 5.8078 -9.4995 1.0089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001636656279.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:42 Heat of formation + Delta-G solvation = 48.124656 kcal Electronic energy + Delta-G solvation = -20050.573666 eV Core-core repulsion = 16883.843442 eV Total energy + Delta-G solvation = -3166.730224 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.38239 -39.96926 -38.08243 -34.87256 -33.72672 -33.17329 -31.35577 -31.14946 -29.58222 -27.30768 -25.44832 -23.73820 -22.26705 -21.80994 -20.52145 -19.81274 -18.98726 -18.23831 -16.98672 -16.19371 -15.84582 -15.16896 -14.81621 -14.70799 -14.39979 -14.15591 -13.71508 -13.13966 -13.02448 -12.82036 -12.63383 -12.31508 -12.19084 -11.94322 -11.30374 -10.97910 -10.45381 -10.41426 -10.18026 -10.08805 -9.84220 -9.40483 -9.17866 -8.66876 -8.59192 -8.00998 -7.51152 -7.35324 -4.83234 1.11484 2.33796 2.59350 2.70194 2.76153 3.11187 3.32586 3.36906 3.53533 3.81035 4.23484 4.28027 4.51617 4.66506 4.92497 5.08433 5.45843 5.52663 5.76989 5.77942 5.87954 5.91629 6.05699 6.36959 6.43882 6.46945 6.51034 6.98239 7.04266 7.10405 7.36563 7.45663 7.52428 7.67749 7.73929 8.03483 8.16301 8.31305 8.57474 9.34109 9.90006 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.023875 B = 0.005723 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.503926 B = 4891.769117 C = 5899.530118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.100 3.900 3 N -0.501 5.501 4 C 0.221 3.779 5 N -0.556 5.556 6 H 0.425 0.575 7 C -0.089 4.089 8 C 0.596 3.404 9 O -0.495 6.495 10 N -0.653 5.653 11 C 0.382 3.618 12 C -0.308 4.308 13 C -0.036 4.036 14 C -0.274 4.274 15 C 0.274 3.726 16 C -0.481 4.481 17 H 0.085 0.915 18 C 0.049 3.951 19 N -0.802 5.802 20 Si 1.143 2.857 21 H -0.291 1.291 22 H -0.280 1.280 23 H -0.325 1.325 24 N -0.596 5.596 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.216 0.784 29 H 0.400 0.600 30 H 0.140 0.860 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.266 14.184 -2.289 14.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.035 4.035 3 N -0.221 5.221 4 C -0.063 4.063 5 N -0.161 5.161 6 H 0.264 0.736 7 C -0.205 4.205 8 C 0.383 3.617 9 O -0.368 6.368 10 N -0.297 5.297 11 C 0.151 3.849 12 C -0.332 4.332 13 C -0.060 4.060 14 C -0.297 4.297 15 C 0.150 3.850 16 C -0.513 4.513 17 H 0.103 0.897 18 C -0.173 4.173 19 N -0.424 5.424 20 Si 0.977 3.023 21 H -0.218 1.218 22 H -0.207 1.207 23 H -0.258 1.258 24 N -0.321 5.321 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.109 0.891 28 H 0.233 0.767 29 H 0.234 0.766 30 H 0.157 0.843 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.557 15.820 -1.232 15.944 hybrid contribution -0.314 -2.435 -1.163 2.717 sum -1.870 13.385 -2.395 13.725 Atomic orbital electron populations 1.20317 0.86360 1.03742 1.03182 1.21076 0.96955 0.86433 0.99013 1.70146 1.00458 1.30382 1.21130 1.25147 0.97443 0.82006 1.01732 1.43404 1.08154 1.08938 1.55593 0.73638 1.20898 0.84471 0.94721 1.20394 1.16714 0.85776 0.82263 0.76931 1.90753 1.15973 1.81901 1.48217 1.43110 1.10116 1.05079 1.71408 1.18000 0.91207 0.82526 0.93194 1.21514 0.98112 0.97547 1.16066 1.20928 0.97514 0.92589 0.94964 1.21640 0.96332 0.98412 1.13298 1.18171 0.90679 0.87241 0.88889 1.20672 1.04092 0.94451 1.32053 0.89714 1.27629 0.90244 1.07284 0.92155 1.70613 1.30839 1.06371 1.34587 0.82136 0.74925 0.71423 0.73838 1.21818 1.20725 1.25779 1.66164 1.36072 1.00902 1.28926 0.90631 0.91076 0.89089 0.76723 0.76567 0.84310 0.87458 0.87588 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 9.88 36.01 0.36 -0.61 16 2 C 0.10 1.38 7.15 -82.51 -0.59 0.79 16 3 N -0.50 -6.39 11.20 -10.64 -0.12 -6.51 16 4 C 0.22 2.03 13.01 -90.57 -1.18 0.86 16 5 N -0.56 -5.52 6.08 -10.79 -0.07 -5.58 16 6 H 0.42 3.02 8.33 -40.82 -0.34 2.68 16 7 C -0.09 -1.24 7.07 -82.15 -0.58 -1.82 16 8 C 0.60 10.13 7.63 -12.84 -0.10 10.03 16 9 O -0.49 -9.48 11.61 5.21 0.06 -9.42 16 10 N -0.65 -11.84 5.40 -12.58 -0.07 -11.90 16 11 C 0.38 8.57 7.51 -155.07 -1.16 7.41 16 12 C -0.31 -6.79 8.83 -38.88 -0.34 -7.13 16 13 C -0.04 -0.77 10.15 -39.39 -0.40 -1.17 16 14 C -0.27 -6.44 9.83 -38.66 -0.38 -6.82 16 15 C 0.27 7.08 6.27 -85.00 -0.53 6.55 16 16 C -0.48 -12.84 9.51 -37.74 -0.36 -13.20 16 17 H 0.08 2.26 8.06 -52.49 -0.42 1.83 16 18 C 0.05 1.30 5.51 -17.35 -0.10 1.20 16 19 N -0.80 -21.31 13.65 55.55 0.76 -20.55 16 20 Si 1.14 26.86 25.93 -169.99 -4.41 22.46 16 21 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.80 6.55 56.52 0.37 -6.43 16 23 H -0.33 -7.52 7.11 56.52 0.40 -7.12 16 24 N -0.60 -14.76 5.07 -10.27 -0.05 -14.82 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.09 1.21 6.48 -51.93 -0.34 0.88 16 28 H 0.22 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.40 6.18 8.08 -40.82 -0.33 5.85 16 30 H 0.14 2.96 5.33 -52.50 -0.28 2.68 16 31 H 0.11 1.95 8.06 -52.49 -0.42 1.53 16 32 H 0.11 2.31 8.06 -52.48 -0.42 1.89 16 33 H 0.29 7.25 8.73 -40.82 -0.36 6.90 16 LS Contribution 287.50 15.07 4.33 4.33 Total: -1.00 -32.01 287.50 -7.93 -39.94 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -3.01 Total: 5.97 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -5.37 Total: -3.92 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.45 Total: -59.36 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.06 Total: -9.42 kcal Atomic # 14 Polarization: 26.86 SS G_CDS: -4.41 Total: 22.46 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.01 -7.93 -39.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001636656279.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.063 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds