Wall clock time and date at job start Mon Mar 30 2020 01:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33313 * 126.10640 * 2 1 4 4 C 1.30855 * 109.69116 * 179.97438 * 3 2 1 5 5 N 1.34502 * 109.17121 * 359.72274 * 4 3 2 6 6 H 0.97003 * 126.47569 * 180.27292 * 5 4 3 7 7 C 1.36694 * 126.11126 * 179.97438 * 2 1 3 8 8 C 1.46706 * 126.84996 * 0.02562 * 7 2 1 9 9 O 1.21680 * 120.00100 * 0.02562 * 8 7 2 10 10 N 1.34783 * 120.00190 * 179.97438 * 8 7 2 11 11 C 1.39144 * 119.99916 * 185.59151 * 10 8 7 12 12 C 1.39704 * 119.57947 * 18.96219 * 11 10 8 13 13 C 1.38643 * 119.49497 * 180.02562 * 12 11 10 14 14 C 1.38355 * 118.66986 * 0.02562 * 13 12 11 15 15 C 1.40577 * 119.13738 * 359.97438 * 14 13 12 16 16 C 1.41337 * 119.78573 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99776 * 8.93072 * 16 15 14 18 18 C 1.40018 * 119.99877 * 188.93347 * 16 15 14 19 19 N 1.30750 * 120.00150 * 196.07453 * 18 16 15 20 20 Si 1.86798 * 120.00144 * 16.07085 * 18 16 15 21 21 H 1.48498 * 109.47369 * 270.00155 * 20 18 16 22 22 H 1.48498 * 109.47128 * 30.00187 * 20 18 16 23 23 H 1.48505 * 109.47076 * 150.00261 * 20 18 16 24 24 N 1.31925 * 119.57516 * 199.24095 * 11 10 8 25 25 H 1.09004 * 109.47360 * 269.99997 * 1 2 3 26 26 H 1.08993 * 109.47422 * 30.00463 * 1 2 3 27 27 H 1.09005 * 109.46879 * 150.01001 * 1 2 3 28 28 H 1.08001 * 125.41676 * 179.97438 * 4 3 2 29 29 H 0.97003 * 119.99658 * 5.60127 * 10 8 7 30 30 H 1.07999 * 120.25403 * 359.97438 * 12 11 10 31 31 H 1.07999 * 120.66587 * 179.97438 * 13 12 11 32 32 H 1.08005 * 120.42987 * 180.02562 * 14 13 12 33 33 H 0.97003 * 119.99317 * 354.92462 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7073 0.0006 5 7 3.6125 -0.6362 0.0071 6 1 4.4193 -1.1746 0.0126 7 6 2.3126 -1.1043 0.0005 8 6 1.8827 -2.5070 0.0006 9 8 0.6969 -2.7799 -0.0003 10 7 2.8012 -3.4934 0.0006 11 6 2.3977 -4.8198 -0.1167 12 6 1.1292 -5.1124 -0.6237 13 6 0.7286 -6.4347 -0.7394 14 6 1.6046 -7.4305 -0.3454 15 6 2.8676 -7.0717 0.1570 16 6 3.7730 -8.0778 0.5639 17 1 3.5561 -9.1153 0.3569 18 6 4.9512 -7.7293 1.2355 19 7 5.9271 -8.5938 1.3350 20 14 5.1288 -6.0295 1.9893 21 1 5.7191 -5.1038 0.9894 22 1 3.7927 -5.5280 2.3999 23 1 6.0158 -6.1052 3.1779 24 7 3.2157 -5.7848 0.2574 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3633 -0.8901 -0.5137 28 1 4.3969 1.3747 0.0003 29 1 3.7436 -3.2785 0.0825 30 1 0.4653 -4.3147 -0.9225 31 1 -0.2479 -6.6824 -1.1284 32 1 1.3221 -8.4700 -0.4235 33 1 5.8078 -9.4995 1.0089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001636656279.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:41 Heat of formation + Delta-G solvation = 27.476068 kcal Electronic energy + Delta-G solvation = -20051.469056 eV Core-core repulsion = 16883.843442 eV Total energy + Delta-G solvation = -3167.625614 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.31381 -41.48815 -39.74155 -36.42816 -35.50129 -34.20229 -32.98236 -32.44242 -31.21297 -28.39585 -27.27477 -25.01782 -23.68982 -23.30962 -21.87896 -21.06071 -20.40074 -19.77784 -18.48319 -17.48415 -17.02989 -16.90625 -16.32268 -15.97194 -15.80111 -15.38314 -15.31450 -14.87910 -14.38818 -14.26914 -13.95713 -13.76176 -13.73597 -13.21562 -12.93888 -12.75032 -12.22523 -11.90440 -11.65406 -11.39648 -11.08322 -11.06044 -10.86139 -10.41881 -9.90178 -9.66950 -9.35203 -9.23217 -6.82090 0.00025 0.66703 0.77912 1.45519 1.61187 1.64950 1.81036 1.93508 1.98937 2.12496 2.36370 2.61340 3.44775 3.54461 3.65228 3.99806 4.08137 4.25553 4.35685 4.58370 4.64451 4.68988 4.77832 4.83113 4.97277 5.06492 5.31625 5.36936 5.38827 5.51261 5.71088 5.77657 5.90165 6.17978 6.31428 6.37841 6.62212 6.84550 6.87624 7.47610 7.90809 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.023875 B = 0.005723 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.503926 B = 4891.769117 C = 5899.530118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.096 3.904 3 N -0.532 5.532 4 C 0.253 3.747 5 N -0.546 5.546 6 H 0.439 0.561 7 C -0.115 4.115 8 C 0.600 3.400 9 O -0.521 6.521 10 N -0.650 5.650 11 C 0.373 3.627 12 C -0.306 4.306 13 C -0.028 4.028 14 C -0.291 4.291 15 C 0.259 3.741 16 C -0.513 4.513 17 H 0.069 0.931 18 C 0.022 3.978 19 N -0.824 5.824 20 Si 1.174 2.826 21 H -0.269 1.269 22 H -0.294 1.294 23 H -0.321 1.321 24 N -0.607 5.607 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.269 0.731 29 H 0.412 0.588 30 H 0.150 0.850 31 H 0.145 0.855 32 H 0.115 0.885 33 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.135 17.072 -2.684 17.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.039 4.039 3 N -0.253 5.253 4 C -0.032 4.032 5 N -0.153 5.153 6 H 0.280 0.720 7 C -0.231 4.231 8 C 0.389 3.611 9 O -0.397 6.397 10 N -0.295 5.295 11 C 0.141 3.859 12 C -0.330 4.330 13 C -0.053 4.053 14 C -0.314 4.314 15 C 0.133 3.867 16 C -0.546 4.546 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.447 5.447 20 Si 1.004 2.996 21 H -0.195 1.195 22 H -0.222 1.222 23 H -0.253 1.253 24 N -0.332 5.332 25 H 0.097 0.903 26 H 0.103 0.897 27 H 0.096 0.904 28 H 0.284 0.716 29 H 0.249 0.751 30 H 0.167 0.833 31 H 0.162 0.838 32 H 0.133 0.867 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.389 18.716 -1.643 18.839 hybrid contribution -0.498 -3.129 -1.111 3.358 sum -1.887 15.587 -2.753 15.940 Atomic orbital electron populations 1.20313 0.86173 1.03728 1.03372 1.21337 0.97597 0.86851 0.98079 1.70199 1.01877 1.30200 1.23010 1.26213 0.97771 0.81970 0.97199 1.43368 1.07363 1.09441 1.55082 0.71961 1.20373 0.86390 0.92779 1.23512 1.17082 0.85219 0.83096 0.75680 1.90716 1.17030 1.82558 1.49401 1.43086 1.11204 1.03617 1.71601 1.18330 0.91270 0.83811 0.92453 1.21880 0.98130 0.98204 1.14792 1.21336 0.98617 0.91849 0.93458 1.21809 0.96057 0.99584 1.13913 1.18358 0.91439 0.87731 0.89124 1.20670 1.05413 0.94196 1.34292 0.91257 1.28425 0.90051 1.09089 0.92034 1.70638 1.31231 1.06578 1.36262 0.81750 0.74271 0.69656 0.73961 1.19488 1.22210 1.25267 1.66150 1.36865 1.00932 1.29257 0.90301 0.89686 0.90434 0.71589 0.75096 0.83257 0.83750 0.86681 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.84 9.88 71.24 0.70 -1.13 16 2 C 0.10 2.46 7.15 41.97 0.30 2.76 16 3 N -0.53 -11.87 11.20 -187.57 -2.10 -13.97 16 4 C 0.25 3.53 13.01 180.33 2.35 5.87 16 5 N -0.55 -8.92 6.08 -188.06 -1.14 -10.06 16 6 H 0.44 4.60 8.33 -92.71 -0.77 3.82 16 7 C -0.11 -2.93 7.07 40.00 0.28 -2.65 16 8 C 0.60 19.46 7.63 86.45 0.66 20.12 16 9 O -0.52 -19.42 11.61 -4.28 -0.05 -19.47 16 10 N -0.65 -22.46 5.40 -311.95 -1.69 -24.15 16 11 C 0.37 16.28 7.51 133.29 1.00 17.28 16 12 C -0.31 -12.99 8.83 22.72 0.20 -12.79 16 13 C -0.03 -1.17 10.15 22.39 0.23 -0.94 16 14 C -0.29 -13.55 9.83 22.87 0.22 -13.33 16 15 C 0.26 13.43 6.27 40.19 0.25 13.68 16 16 C -0.51 -28.19 9.51 23.46 0.22 -27.97 16 17 H 0.07 3.87 8.06 -2.91 -0.02 3.85 16 18 C 0.02 1.17 5.51 85.29 0.47 1.64 16 19 N -0.82 -44.71 13.65 21.84 0.30 -44.41 16 20 Si 1.17 54.10 25.93 68.60 1.78 55.88 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.29 -14.10 6.55 99.48 0.65 -13.45 16 23 H -0.32 -14.35 7.11 99.48 0.71 -13.65 16 24 N -0.61 -29.71 5.07 -186.42 -0.94 -30.65 16 25 H 0.08 1.76 8.14 -2.38 -0.02 1.75 16 26 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.08 2.02 6.48 -2.38 -0.02 2.01 16 28 H 0.27 0.60 8.06 -2.91 -0.02 0.58 16 29 H 0.41 11.86 8.08 -92.71 -0.75 11.11 16 30 H 0.15 6.10 5.33 -3.20 -0.02 6.08 16 31 H 0.14 4.80 8.06 -2.91 -0.02 4.78 16 32 H 0.12 5.02 8.06 -2.91 -0.02 4.99 16 33 H 0.28 14.88 8.73 -92.71 -0.81 14.07 16 Total: -1.00 -69.81 287.50 2.61 -67.20 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -0.43 Total: 17.09 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 6.89 Total: 2.55 kcal Atomic # 7 Polarization: -117.67 SS G_CDS: -5.58 Total: -123.25 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.05 Total: -19.47 kcal Atomic # 14 Polarization: 54.10 SS G_CDS: 1.78 Total: 55.88 kcal Total: -69.81 2.61 -67.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001636656279.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.672 kcal (2) G-P(sol) polarization free energy of solvation -69.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds