Wall clock time and date at job start Mon Mar 30 2020 01:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35375 * 126.97490 * 2 1 4 4 N 1.33770 * 106.53619 * 179.84849 * 3 2 1 5 5 N 1.28609 * 109.05992 * 0.42709 * 4 3 2 6 6 N 1.28730 * 110.23907 * 359.72849 * 5 4 3 7 7 C 1.40192 * 125.94408 * 180.02562 * 6 5 4 8 8 C 1.38951 * 119.98192 * 144.73037 * 7 6 5 9 9 C 1.37924 * 120.02024 * 179.72587 * 8 7 6 10 10 C 1.39113 * 119.97905 * 0.54381 * 9 8 7 11 11 N 1.39463 * 120.02014 * 179.70293 * 10 9 8 12 12 C 1.34777 * 120.00150 * 213.27032 * 11 10 9 13 13 O 1.21769 * 119.99759 * 5.14055 * 12 11 10 14 14 C 1.41801 * 119.99915 * 185.12956 * 12 11 10 15 15 H 1.08001 * 120.00348 * 6.25677 * 14 12 11 16 16 C 1.40141 * 119.99835 * 186.25505 * 14 12 11 17 17 N 1.30629 * 119.99902 * 353.72326 * 16 14 12 18 18 Si 1.86802 * 119.99927 * 173.72741 * 16 14 12 19 19 H 1.48508 * 109.47268 * 94.98243 * 18 16 14 20 20 H 1.48496 * 109.47081 * 214.98104 * 18 16 14 21 21 H 1.48499 * 109.47030 * 334.98521 * 18 16 14 22 22 C 1.39115 * 119.96256 * 359.72910 * 10 9 8 23 23 C 1.37921 * 119.98072 * 359.97438 * 22 10 9 24 24 H 1.08993 * 109.47355 * 269.68454 * 1 2 3 25 25 H 1.09003 * 109.46941 * 149.68238 * 1 2 3 26 26 H 1.09004 * 109.47057 * 29.69136 * 1 2 3 27 27 H 1.07999 * 126.72875 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.99387 * 359.97438 * 8 7 6 29 29 H 1.08006 * 120.01200 * 180.25089 * 9 8 7 30 30 H 0.96999 * 119.99469 * 33.27477 * 11 10 9 31 31 H 0.97007 * 119.99499 * 180.02562 * 17 16 14 32 32 H 1.08006 * 120.01291 * 179.97438 * 22 10 9 33 33 H 1.08001 * 119.98920 * 180.02562 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3213 1.0815 0.0000 4 7 3.5748 0.6144 0.0034 5 7 3.5439 -0.6713 -0.0037 6 7 2.3257 -1.0875 -0.0060 7 6 1.9139 -2.4275 -0.0128 8 6 0.7705 -2.8061 0.6801 9 6 0.3615 -4.1233 0.6692 10 6 1.1003 -5.0749 -0.0264 11 7 0.6909 -6.4080 -0.0329 12 6 1.6084 -7.3945 -0.0730 13 8 2.7944 -7.1260 -0.0092 14 6 1.1925 -8.7452 -0.1894 15 1 0.1496 -8.9775 -0.3473 16 6 2.1347 -9.7787 -0.0995 17 7 3.4085 -9.4971 -0.0317 18 14 1.5691 -11.5589 -0.0766 19 1 1.6188 -12.1118 -1.4540 20 1 2.4620 -12.3506 0.8071 21 1 0.1768 -11.6293 0.4350 22 6 2.2481 -4.6960 -0.7152 23 6 2.6522 -3.3773 -0.7083 24 1 -0.3634 -0.0057 1.0276 25 1 -0.3633 -0.8871 -0.5188 26 1 -0.3633 0.8928 -0.5090 27 1 2.0183 2.1181 -0.0004 28 1 0.1997 -2.0681 1.2241 29 1 -0.5295 -4.4167 1.2045 30 1 -0.2541 -6.6252 -0.0085 31 1 4.0607 -10.2126 0.0301 32 1 2.8225 -5.4341 -1.2552 33 1 3.5430 -3.0829 -1.2433 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638947273.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:14 Heat of formation + Delta-G solvation = 90.543099 kcal Electronic energy + Delta-G solvation = -19617.541466 eV Core-core repulsion = 16452.650643 eV Total energy + Delta-G solvation = -3164.890823 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.28581 -39.53161 -37.48048 -34.72585 -33.16527 -32.92135 -32.41157 -30.68098 -28.79571 -27.54471 -26.55685 -23.50607 -23.17889 -21.61958 -20.87755 -19.99278 -17.96214 -17.75561 -16.56331 -16.41937 -15.70742 -14.92329 -14.52127 -14.28455 -14.12543 -13.89459 -13.56572 -13.34379 -13.18492 -12.84766 -12.58571 -12.33638 -12.08166 -11.58475 -11.44211 -11.30228 -11.12738 -10.87648 -10.77934 -10.45397 -10.39970 -9.38508 -9.09532 -9.00025 -8.81318 -7.91974 -7.28692 -6.52674 -5.05428 1.01220 1.60873 2.04744 2.47729 2.61814 2.96779 3.05263 3.08920 3.84769 3.89584 4.32443 4.38961 4.39901 4.67940 4.92002 4.97628 5.04192 5.26190 5.35273 5.49683 5.55191 5.58869 5.64862 5.80245 5.95610 6.15030 6.19242 6.24970 6.58297 6.76124 6.90545 7.09081 7.12923 7.64573 7.83105 7.94606 8.59365 8.66103 9.06037 10.21585 10.40363 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.049817 B = 0.003664 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.924667 B = 7639.309445 C = 8105.512324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.024 4.024 3 C -0.056 4.056 4 N -0.277 5.277 5 N -0.082 5.082 6 N -0.220 5.220 7 C 0.046 3.954 8 C -0.083 4.083 9 C -0.168 4.168 10 C 0.219 3.781 11 N -0.696 5.696 12 C 0.539 3.461 13 O -0.563 6.563 14 C -0.536 4.536 15 H 0.072 0.928 16 C 0.087 3.913 17 N -0.743 5.743 18 Si 0.914 3.086 19 H -0.270 1.270 20 H -0.276 1.276 21 H -0.262 1.262 22 C -0.118 4.118 23 C -0.066 4.066 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.188 0.812 28 H 0.128 0.872 29 H 0.132 0.868 30 H 0.396 0.604 31 H 0.275 0.725 32 H 0.153 0.847 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.914 11.905 -0.234 15.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.155 4.155 3 C -0.213 4.213 4 N -0.141 5.141 5 N -0.060 5.060 6 N -0.008 5.008 7 C -0.045 4.045 8 C -0.104 4.104 9 C -0.190 4.190 10 C 0.117 3.883 11 N -0.338 5.338 12 C 0.348 3.652 13 O -0.446 6.446 14 C -0.571 4.571 15 H 0.091 0.909 16 C -0.137 4.137 17 N -0.370 5.370 18 Si 0.738 3.262 19 H -0.195 1.195 20 H -0.201 1.201 21 H -0.186 1.186 22 C -0.140 4.140 23 C -0.087 4.087 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.104 0.896 27 H 0.205 0.795 28 H 0.146 0.854 29 H 0.150 0.850 30 H 0.230 0.770 31 H 0.086 0.914 32 H 0.170 0.830 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.322 11.496 -0.194 13.631 hybrid contribution -1.822 -0.691 0.160 1.955 sum -9.144 10.806 -0.034 14.155 Atomic orbital electron populations 1.20429 0.86103 1.04302 1.03285 1.22430 0.96575 0.86556 1.09932 1.23288 0.89074 0.99906 1.09040 1.75052 1.21327 1.00940 1.16828 1.78431 1.01139 1.06551 1.19908 1.44609 1.04995 1.06133 1.45052 1.17414 0.99892 0.79202 1.08010 1.20617 0.95110 0.96490 0.98149 1.20739 1.03349 0.92028 1.02890 1.18188 0.93615 0.85702 0.90825 1.44413 1.10958 1.02725 1.75729 1.17148 0.84778 0.84818 0.78409 1.90682 1.16199 1.82998 1.54750 1.20055 0.95720 0.89897 1.51441 0.90942 1.25781 0.94246 1.01219 0.92423 1.69999 1.01461 1.34210 1.31311 0.86241 0.79698 0.81350 0.78928 1.19485 1.20084 1.18570 1.21328 0.97916 0.94772 0.99960 1.20839 0.98602 0.91958 0.97301 0.90190 0.90324 0.89554 0.79474 0.85419 0.85047 0.77043 0.91400 0.82976 0.85128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 8.66 36.01 0.31 -0.36 16 2 C -0.02 -0.31 6.83 -81.71 -0.56 -0.87 16 3 C -0.06 -0.72 11.99 -17.73 -0.21 -0.93 16 4 N -0.28 -4.65 12.39 30.24 0.37 -4.28 16 5 N -0.08 -1.50 12.84 60.35 0.77 -0.72 16 6 N -0.22 -3.52 3.50 -6.72 -0.02 -3.54 16 7 C 0.05 0.75 6.27 -83.50 -0.52 0.22 16 8 C -0.08 -1.15 8.33 -39.43 -0.33 -1.48 16 9 C -0.17 -2.49 9.96 -39.37 -0.39 -2.88 16 10 C 0.22 4.10 6.28 -83.74 -0.53 3.57 16 11 N -0.70 -14.13 5.31 -12.40 -0.07 -14.19 16 12 C 0.54 13.94 7.30 -14.90 -0.11 13.83 16 13 O -0.56 -16.65 12.57 5.13 0.06 -16.58 16 14 C -0.54 -13.72 9.31 -37.51 -0.35 -14.07 16 15 H 0.07 1.66 7.86 -52.49 -0.41 1.25 16 16 C 0.09 2.23 5.49 -17.35 -0.10 2.13 16 17 N -0.74 -20.57 11.76 55.56 0.65 -19.92 16 18 Si 0.91 18.41 29.56 -169.99 -5.03 13.39 16 19 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 22 C -0.12 -2.34 8.64 -39.37 -0.34 -2.68 16 23 C -0.07 -1.18 9.70 -39.43 -0.38 -1.56 16 24 H 0.08 0.53 7.79 -51.93 -0.40 0.12 16 25 H 0.08 0.66 7.00 -51.93 -0.36 0.29 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.19 1.62 8.06 -52.49 -0.42 1.19 16 28 H 0.13 1.40 6.18 -52.49 -0.32 1.07 16 29 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 30 H 0.40 6.64 8.77 -40.82 -0.36 6.28 16 31 H 0.28 6.88 8.29 -40.82 -0.34 6.54 16 32 H 0.15 3.44 6.39 -52.48 -0.34 3.11 16 33 H 0.13 2.25 8.03 -52.49 -0.42 1.83 16 LS Contribution 292.59 15.07 4.41 4.41 Total: -1.00 -32.92 292.59 -5.37 -38.28 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -3.02 Total: 8.22 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -3.51 Total: -5.06 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 1.71 Total: -42.65 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: 0.06 Total: -16.58 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.39 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.92 -5.37 -38.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638947273.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.826 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds