Wall clock time and date at job start Mon Mar 30 2020 01:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35375 * 126.97490 * 2 1 4 4 N 1.33770 * 106.53619 * 179.84849 * 3 2 1 5 5 N 1.28609 * 109.05992 * 0.42709 * 4 3 2 6 6 N 1.28730 * 110.23907 * 359.72849 * 5 4 3 7 7 C 1.40192 * 125.94408 * 180.02562 * 6 5 4 8 8 C 1.38951 * 119.98192 * 144.73037 * 7 6 5 9 9 C 1.37924 * 120.02024 * 179.72587 * 8 7 6 10 10 C 1.39113 * 119.97905 * 0.54381 * 9 8 7 11 11 N 1.39463 * 120.02014 * 179.70293 * 10 9 8 12 12 C 1.34777 * 120.00150 * 213.27032 * 11 10 9 13 13 O 1.21769 * 119.99759 * 5.14055 * 12 11 10 14 14 C 1.41801 * 119.99915 * 185.12956 * 12 11 10 15 15 H 1.08001 * 120.00348 * 6.25677 * 14 12 11 16 16 C 1.40141 * 119.99835 * 186.25505 * 14 12 11 17 17 N 1.30629 * 119.99902 * 353.72326 * 16 14 12 18 18 Si 1.86802 * 119.99927 * 173.72741 * 16 14 12 19 19 H 1.48508 * 109.47268 * 94.98243 * 18 16 14 20 20 H 1.48496 * 109.47081 * 214.98104 * 18 16 14 21 21 H 1.48499 * 109.47030 * 334.98521 * 18 16 14 22 22 C 1.39115 * 119.96256 * 359.72910 * 10 9 8 23 23 C 1.37921 * 119.98072 * 359.97438 * 22 10 9 24 24 H 1.08993 * 109.47355 * 269.68454 * 1 2 3 25 25 H 1.09003 * 109.46941 * 149.68238 * 1 2 3 26 26 H 1.09004 * 109.47057 * 29.69136 * 1 2 3 27 27 H 1.07999 * 126.72875 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.99387 * 359.97438 * 8 7 6 29 29 H 1.08006 * 120.01200 * 180.25089 * 9 8 7 30 30 H 0.96999 * 119.99469 * 33.27477 * 11 10 9 31 31 H 0.97007 * 119.99499 * 180.02562 * 17 16 14 32 32 H 1.08006 * 120.01291 * 179.97438 * 22 10 9 33 33 H 1.08001 * 119.98920 * 180.02562 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3213 1.0815 0.0000 4 7 3.5748 0.6144 0.0034 5 7 3.5439 -0.6713 -0.0037 6 7 2.3257 -1.0875 -0.0060 7 6 1.9139 -2.4275 -0.0128 8 6 0.7705 -2.8061 0.6801 9 6 0.3615 -4.1233 0.6692 10 6 1.1003 -5.0749 -0.0264 11 7 0.6909 -6.4080 -0.0329 12 6 1.6084 -7.3945 -0.0730 13 8 2.7944 -7.1260 -0.0092 14 6 1.1925 -8.7452 -0.1894 15 1 0.1496 -8.9775 -0.3473 16 6 2.1347 -9.7787 -0.0995 17 7 3.4085 -9.4971 -0.0317 18 14 1.5691 -11.5589 -0.0766 19 1 1.6188 -12.1118 -1.4540 20 1 2.4620 -12.3506 0.8071 21 1 0.1768 -11.6293 0.4350 22 6 2.2481 -4.6960 -0.7152 23 6 2.6522 -3.3773 -0.7083 24 1 -0.3634 -0.0057 1.0276 25 1 -0.3633 -0.8871 -0.5188 26 1 -0.3633 0.8928 -0.5090 27 1 2.0183 2.1181 -0.0004 28 1 0.1997 -2.0681 1.2241 29 1 -0.5295 -4.4167 1.2045 30 1 -0.2541 -6.6252 -0.0085 31 1 4.0607 -10.2126 0.0301 32 1 2.8225 -5.4341 -1.2552 33 1 3.5430 -3.0829 -1.2433 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638947273.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:14 Heat of formation + Delta-G solvation = 66.997595 kcal Electronic energy + Delta-G solvation = -19618.562476 eV Core-core repulsion = 16452.650643 eV Total energy + Delta-G solvation = -3165.911832 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.42015 -41.02920 -39.14684 -36.21360 -34.78119 -34.26141 -33.86294 -32.00005 -30.31522 -28.58546 -28.16587 -24.84859 -24.51035 -22.81476 -22.34292 -21.47475 -19.52745 -19.13759 -18.09853 -17.72530 -17.47780 -16.26769 -15.80523 -15.68692 -15.32277 -15.14061 -14.94093 -14.64695 -14.48282 -14.02391 -13.86157 -13.75737 -13.32084 -13.01601 -12.86470 -12.73746 -12.67886 -12.48368 -12.05132 -12.01582 -11.66302 -11.04566 -10.74041 -10.19538 -10.11273 -9.86636 -8.82590 -8.42984 -7.04872 -0.25875 0.28629 0.85359 1.33643 1.39536 1.40706 1.53790 1.57668 2.19113 2.28934 2.66031 2.87165 3.45157 3.58601 3.67614 3.78981 3.91102 4.06289 4.23608 4.25776 4.46911 4.59903 4.75601 4.82746 4.92145 4.97368 5.05323 5.20125 5.25985 5.29566 5.39432 5.50174 5.84909 5.86187 6.12564 6.26496 6.71282 7.33077 7.44708 8.33214 8.52105 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.049817 B = 0.003664 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.924667 B = 7639.309445 C = 8105.512324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.010 4.010 3 C -0.058 4.058 4 N -0.303 5.303 5 N -0.138 5.138 6 N -0.234 5.234 7 C 0.053 3.947 8 C -0.065 4.065 9 C -0.141 4.141 10 C 0.189 3.811 11 N -0.689 5.689 12 C 0.527 3.473 13 O -0.614 6.614 14 C -0.562 4.562 15 H 0.096 0.904 16 C 0.031 3.969 17 N -0.800 5.800 18 Si 1.001 2.999 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.243 1.243 22 C -0.140 4.140 23 C -0.078 4.078 24 H 0.107 0.893 25 H 0.079 0.921 26 H 0.116 0.884 27 H 0.230 0.770 28 H 0.173 0.827 29 H 0.173 0.827 30 H 0.413 0.587 31 H 0.279 0.721 32 H 0.108 0.892 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.879 13.238 0.909 19.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.141 4.141 3 C -0.216 4.216 4 N -0.167 5.167 5 N -0.115 5.115 6 N -0.022 5.022 7 C -0.038 4.038 8 C -0.085 4.085 9 C -0.163 4.163 10 C 0.089 3.911 11 N -0.332 5.332 12 C 0.337 3.663 13 O -0.501 6.501 14 C -0.596 4.596 15 H 0.114 0.886 16 C -0.187 4.187 17 N -0.429 5.429 18 Si 0.819 3.181 19 H -0.187 1.187 20 H -0.199 1.199 21 H -0.166 1.166 22 C -0.162 4.162 23 C -0.098 4.098 24 H 0.125 0.875 25 H 0.098 0.902 26 H 0.135 0.865 27 H 0.246 0.754 28 H 0.191 0.809 29 H 0.191 0.809 30 H 0.250 0.750 31 H 0.089 0.911 32 H 0.126 0.874 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.324 12.882 0.943 17.178 hybrid contribution -0.635 -0.814 -0.220 1.055 sum -11.960 12.069 0.722 17.006 Atomic orbital electron populations 1.20731 0.82257 1.05929 1.05404 1.23343 0.98645 0.85135 1.07009 1.24077 0.87647 1.01964 1.07863 1.74991 1.23733 1.00768 1.17182 1.78439 1.02671 1.07350 1.23016 1.44711 1.05253 1.06490 1.45754 1.17558 0.99945 0.79333 1.07012 1.21047 0.93937 0.96900 0.96649 1.21096 1.03289 0.91183 1.00732 1.18399 0.94340 0.85746 0.92590 1.43825 1.10965 1.02692 1.75765 1.17468 0.84763 0.86265 0.77846 1.90650 1.18539 1.84126 1.56750 1.20612 0.97068 0.90313 1.51631 0.88567 1.27048 0.93954 1.06721 0.90996 1.70166 1.03338 1.36184 1.33166 0.84952 0.79796 0.74151 0.79157 1.18715 1.19918 1.16613 1.20996 0.98976 0.94793 1.01459 1.20697 0.98971 0.91800 0.98351 0.87506 0.90221 0.86514 0.75381 0.80936 0.80938 0.74995 0.91063 0.87354 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.89 8.66 71.24 0.62 -0.28 16 2 C -0.01 -0.23 6.83 41.24 0.28 0.05 16 3 C -0.06 -1.32 11.99 83.74 1.00 -0.32 16 4 N -0.30 -10.00 12.39 -58.24 -0.72 -10.72 16 5 N -0.14 -5.06 12.84 37.02 0.48 -4.59 16 6 N -0.23 -7.18 3.50 -175.18 -0.61 -7.80 16 7 C 0.05 1.66 6.27 38.15 0.24 1.90 16 8 C -0.06 -1.57 8.33 22.37 0.19 -1.38 16 9 C -0.14 -3.76 9.96 22.41 0.22 -3.54 16 10 C 0.19 7.13 6.28 38.35 0.24 7.38 16 11 N -0.69 -28.26 5.31 -311.33 -1.65 -29.91 16 12 C 0.53 28.40 7.30 85.12 0.62 29.02 16 13 O -0.61 -38.77 12.57 -4.57 -0.06 -38.83 16 14 C -0.56 -29.23 9.31 23.61 0.22 -29.01 16 15 H 0.10 4.35 7.86 -2.91 -0.02 4.33 16 16 C 0.03 1.63 5.49 85.33 0.47 2.10 16 17 N -0.80 -46.43 11.76 21.85 0.26 -46.18 16 18 Si 1.00 37.79 29.56 68.60 2.03 39.82 16 19 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 20 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 21 H -0.24 -8.37 7.11 99.48 0.71 -7.66 16 22 C -0.14 -5.96 8.64 22.41 0.19 -5.76 16 23 C -0.08 -2.91 9.70 22.37 0.22 -2.69 16 24 H 0.11 0.66 7.79 -2.39 -0.02 0.64 16 25 H 0.08 0.90 7.00 -2.39 -0.02 0.88 16 26 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.23 2.94 8.06 -2.91 -0.02 2.91 16 28 H 0.17 2.68 6.18 -2.91 -0.02 2.66 16 29 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16 30 H 0.41 13.46 8.77 -92.71 -0.81 12.64 16 31 H 0.28 14.65 8.29 -92.70 -0.77 13.88 16 32 H 0.11 5.52 6.39 -2.91 -0.02 5.50 16 33 H 0.12 4.59 8.03 -2.91 -0.02 4.56 16 Total: -1.00 -79.46 292.59 4.58 -74.88 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: 0.35 Total: 25.85 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 4.51 Total: -2.52 kcal Atomic # 7 Polarization: -96.94 SS G_CDS: -2.26 Total: -99.19 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -0.06 Total: -38.83 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.82 kcal Total: -79.46 4.58 -74.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638947273.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.876 kcal (2) G-P(sol) polarization free energy of solvation -79.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds