Wall clock time and date at job start Mon Mar 30 2020 00:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00195 * 2 1 4 4 H 1.48507 * 109.47057 * 240.00360 * 3 2 1 5 5 H 1.48503 * 109.46823 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47218 * 120.00322 * 3 2 1 7 7 C 1.37884 * 119.99545 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99582 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00367 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47132 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99733 * 180.02562 * 10 9 7 12 12 O 1.21546 * 120.00336 * 359.97438 * 11 10 9 13 13 C 1.47940 * 119.99681 * 179.97438 * 11 10 9 14 14 C 1.39497 * 119.59336 * 179.97438 * 13 11 10 15 15 C 1.38235 * 119.18611 * 180.02562 * 14 13 11 16 16 C 1.39782 * 118.38950 * 359.97438 * 15 14 13 17 17 C 1.48267 * 120.43944 * 179.97438 * 16 15 14 18 18 C 1.40948 * 126.24557 * 0.02940 * 17 16 15 19 19 N 1.30636 * 108.07007 * 179.73359 * 18 17 16 20 20 N 1.40000 * 108.56450 * 0.26290 * 19 18 17 21 21 H 0.96998 * 125.86850 * 180.02562 * 20 19 18 22 22 C 1.34716 * 108.26010 * 0.02562 * 20 19 18 23 23 C 1.39748 * 119.12309 * 0.27801 * 16 15 14 24 24 N 1.31302 * 120.72745 * 359.44649 * 23 16 15 25 25 H 0.97001 * 120.00322 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47165 * 59.99581 * 9 7 2 27 27 H 1.08999 * 109.46682 * 299.99963 * 9 7 2 28 28 H 0.96996 * 119.99552 * 359.97438 * 10 9 7 29 29 H 1.07998 * 120.41096 * 0.02562 * 14 13 11 30 30 H 1.07995 * 120.80232 * 179.97438 * 15 14 13 31 31 H 1.08002 * 125.96843 * 0.02562 * 18 17 16 32 32 H 1.08005 * 126.19482 * 179.97438 * 22 20 19 33 33 H 1.08001 * 119.63458 * 179.72521 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6128 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5586 -5.1055 -0.0011 13 6 2.7150 -6.0079 -0.0016 14 6 2.2407 -7.3197 -0.0016 15 6 3.1464 -8.3640 -0.0016 16 6 4.5108 -8.0604 -0.0022 17 6 5.5217 -9.1450 -0.0016 18 6 5.2584 -10.5297 -0.0011 19 7 6.4027 -11.1598 -0.0065 20 7 7.4333 -10.2122 -0.0045 21 1 8.3837 -10.4062 -0.0079 22 6 6.8782 -8.9848 0.0028 23 6 4.9095 -6.7210 0.0032 24 7 4.0192 -5.7560 -0.0022 25 1 -0.4851 0.8400 0.0004 26 1 0.6239 -2.5567 -0.8902 27 1 0.6247 -2.5571 0.8897 28 1 3.1566 -3.4355 -0.0009 29 1 1.1789 -7.5172 -0.0016 30 1 2.8080 -9.3896 -0.0012 31 1 4.2812 -10.9895 -0.0015 32 1 7.4095 -8.0445 0.0064 33 1 5.9616 -6.4770 0.0073 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001639707810.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:13 Heat of formation + Delta-G solvation = 67.065564 kcal Electronic energy + Delta-G solvation = -18875.741589 eV Core-core repulsion = 15709.832704 eV Total energy + Delta-G solvation = -3165.908885 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.65053 -40.14946 -38.18064 -34.23691 -33.55177 -32.24912 -31.98949 -31.71536 -29.21552 -27.19524 -24.49600 -24.03242 -22.46437 -21.87926 -20.76502 -19.92677 -18.56181 -17.96963 -16.32193 -16.04589 -15.36373 -15.14701 -15.05518 -14.89021 -14.64401 -14.45449 -14.05786 -13.52916 -13.37999 -13.20523 -12.74495 -12.09831 -11.87487 -11.77483 -11.27318 -10.96833 -10.84572 -10.48512 -10.29894 -10.12787 -9.77321 -9.60355 -9.37954 -9.10747 -8.69258 -8.22752 -7.81060 -6.12512 -4.18863 0.51399 1.26842 1.52840 2.41125 2.41828 3.29360 3.33528 3.35524 3.36754 3.92385 4.17973 4.20697 4.34109 4.39237 4.49022 4.71156 4.76183 5.00404 5.05356 5.20398 5.23606 5.38922 5.63218 5.73876 6.03852 6.07064 6.17845 6.60446 6.75301 7.16413 7.32127 7.44018 7.54065 7.68578 7.88846 8.00937 8.67669 8.79956 9.09966 9.47078 10.97804 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.036504 B = 0.003172 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.847491 B = 8824.966158 C = 9576.666301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.247 3.753 10 N -0.686 5.686 11 C 0.549 3.451 12 O -0.551 6.551 13 C 0.083 3.917 14 C -0.106 4.106 15 C -0.085 4.085 16 C -0.037 4.037 17 C -0.198 4.198 18 C 0.071 3.929 19 N -0.294 5.294 20 N -0.472 5.472 21 H 0.442 0.558 22 C 0.081 3.919 23 C 0.095 3.905 24 N -0.449 5.449 25 H 0.266 0.734 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.402 0.598 29 H 0.149 0.851 30 H 0.138 0.862 31 H 0.188 0.812 32 H 0.185 0.815 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.929 -19.586 0.015 24.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.126 3.874 10 N -0.333 5.333 11 C 0.332 3.668 12 O -0.430 6.430 13 C -0.056 4.056 14 C -0.127 4.127 15 C -0.111 4.111 16 C -0.041 4.041 17 C -0.210 4.210 18 C -0.117 4.117 19 N -0.116 5.116 20 N -0.178 5.178 21 H 0.287 0.713 22 C -0.069 4.069 23 C -0.066 4.066 24 N -0.160 5.160 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.236 0.764 29 H 0.167 0.833 30 H 0.156 0.844 31 H 0.205 0.795 32 H 0.202 0.798 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 14.704 -19.807 0.005 24.668 hybrid contribution 0.755 0.846 0.002 1.134 sum 15.459 -18.962 0.007 24.465 Atomic orbital electron populations 1.69966 1.06096 1.27393 1.48975 1.24946 0.94919 0.99423 0.94714 0.86458 0.79394 0.82232 0.78728 1.20040 1.21115 1.20046 1.21201 0.93373 0.90341 1.53141 0.91780 1.19201 0.88335 0.81892 0.97953 1.46383 1.12095 1.05478 1.69391 1.17863 0.87071 0.83107 0.78797 1.90748 1.15418 1.84707 1.52174 1.21569 0.90516 0.94005 0.99471 1.22063 1.02000 0.91826 0.96793 1.21462 0.91635 0.99767 0.98206 1.19185 0.92573 0.92948 0.99359 1.18798 0.91823 0.92922 1.17488 1.24050 0.97534 0.91910 0.98209 1.77253 0.95210 1.14825 1.24266 1.46228 1.09383 1.03778 1.58425 0.71326 1.22720 0.94033 0.90662 0.99436 1.22711 0.99123 0.87228 0.97509 1.67553 1.01805 1.36897 1.09707 0.92414 0.95203 0.95211 0.76380 0.83299 0.84381 0.79502 0.79849 0.82679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.54 -15.06 9.28 -34.44 -0.32 -15.38 16 8 H 0.06 1.68 7.60 -52.49 -0.40 1.28 16 9 C 0.25 6.72 5.43 -5.19 -0.03 6.69 16 10 N -0.69 -15.64 5.54 -62.40 -0.35 -15.99 16 11 C 0.55 11.85 7.80 -12.29 -0.10 11.76 16 12 O -0.55 -13.50 16.31 5.33 0.09 -13.41 16 13 C 0.08 1.41 6.75 -82.99 -0.56 0.85 16 14 C -0.11 -1.48 9.61 -39.11 -0.38 -1.86 16 15 C -0.08 -0.90 9.68 -39.01 -0.38 -1.28 16 16 C -0.04 -0.38 5.90 -104.63 -0.62 -1.00 16 17 C -0.20 -1.69 6.05 -105.34 -0.64 -2.33 16 18 C 0.07 0.59 11.45 -17.03 -0.20 0.39 16 19 N -0.29 -2.67 12.66 30.82 0.39 -2.28 16 20 N -0.47 -2.95 7.32 30.65 0.22 -2.72 16 21 H 0.44 1.30 8.96 -182.67 -1.64 -0.34 16 22 C 0.08 0.50 11.40 -16.88 -0.19 0.31 16 23 C 0.10 1.09 10.73 -17.21 -0.18 0.91 16 24 N -0.45 -6.90 9.51 -9.54 -0.09 -6.99 16 25 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.40 8.37 7.64 -40.82 -0.31 8.06 16 29 H 0.15 2.02 7.63 -52.49 -0.40 1.62 16 30 H 0.14 1.01 7.16 -52.49 -0.38 0.64 16 31 H 0.19 1.08 7.41 -52.49 -0.39 0.69 16 32 H 0.18 0.53 7.30 -52.48 -0.38 0.14 16 33 H 0.16 1.22 7.03 -52.49 -0.37 0.86 16 LS Contribution 300.35 15.07 4.53 4.53 Total: -1.00 -35.22 300.35 -7.42 -42.64 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.25 Total: 2.98 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -3.68 Total: 0.75 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 0.91 Total: -53.59 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.09 Total: -13.41 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -35.22 -7.42 -42.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639707810.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.701 kcal (2) G-P(sol) polarization free energy of solvation -35.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds