Wall clock time and date at job start Mon Mar 30 2020 00:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00195 * 2 1 4 4 H 1.48507 * 109.47057 * 240.00360 * 3 2 1 5 5 H 1.48503 * 109.46823 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47218 * 120.00322 * 3 2 1 7 7 C 1.37884 * 119.99545 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99582 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00367 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47132 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99733 * 180.02562 * 10 9 7 12 12 O 1.21546 * 120.00336 * 359.97438 * 11 10 9 13 13 C 1.47940 * 119.99681 * 179.97438 * 11 10 9 14 14 C 1.39497 * 119.59336 * 179.97438 * 13 11 10 15 15 C 1.38235 * 119.18611 * 180.02562 * 14 13 11 16 16 C 1.39782 * 118.38950 * 359.97438 * 15 14 13 17 17 C 1.48267 * 120.43944 * 179.97438 * 16 15 14 18 18 C 1.40948 * 126.24557 * 0.02940 * 17 16 15 19 19 N 1.30636 * 108.07007 * 179.73359 * 18 17 16 20 20 N 1.40000 * 108.56450 * 0.26290 * 19 18 17 21 21 H 0.96998 * 125.86850 * 180.02562 * 20 19 18 22 22 C 1.34716 * 108.26010 * 0.02562 * 20 19 18 23 23 C 1.39748 * 119.12309 * 0.27801 * 16 15 14 24 24 N 1.31302 * 120.72745 * 359.44649 * 23 16 15 25 25 H 0.97001 * 120.00322 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47165 * 59.99581 * 9 7 2 27 27 H 1.08999 * 109.46682 * 299.99963 * 9 7 2 28 28 H 0.96996 * 119.99552 * 359.97438 * 10 9 7 29 29 H 1.07998 * 120.41096 * 0.02562 * 14 13 11 30 30 H 1.07995 * 120.80232 * 179.97438 * 15 14 13 31 31 H 1.08002 * 125.96843 * 0.02562 * 18 17 16 32 32 H 1.08005 * 126.19482 * 179.97438 * 22 20 19 33 33 H 1.08001 * 119.63458 * 179.72521 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6128 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5586 -5.1055 -0.0011 13 6 2.7150 -6.0079 -0.0016 14 6 2.2407 -7.3197 -0.0016 15 6 3.1464 -8.3640 -0.0016 16 6 4.5108 -8.0604 -0.0022 17 6 5.5217 -9.1450 -0.0016 18 6 5.2584 -10.5297 -0.0011 19 7 6.4027 -11.1598 -0.0065 20 7 7.4333 -10.2122 -0.0045 21 1 8.3837 -10.4062 -0.0079 22 6 6.8782 -8.9848 0.0028 23 6 4.9095 -6.7210 0.0032 24 7 4.0192 -5.7560 -0.0022 25 1 -0.4851 0.8400 0.0004 26 1 0.6239 -2.5567 -0.8902 27 1 0.6247 -2.5571 0.8897 28 1 3.1566 -3.4355 -0.0009 29 1 1.1789 -7.5172 -0.0016 30 1 2.8080 -9.3896 -0.0012 31 1 4.2812 -10.9895 -0.0015 32 1 7.4095 -8.0445 0.0064 33 1 5.9616 -6.4770 0.0073 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001639707810.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:13 Heat of formation + Delta-G solvation = 39.730316 kcal Electronic energy + Delta-G solvation = -18876.926934 eV Core-core repulsion = 15709.832704 eV Total energy + Delta-G solvation = -3167.094230 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.26043 -41.31653 -39.74341 -36.21297 -34.65817 -34.08882 -32.96842 -32.34588 -30.28924 -28.99607 -25.85530 -24.90789 -24.22475 -22.54029 -21.83007 -21.19929 -19.63256 -19.13280 -17.96997 -17.51733 -16.72983 -16.34651 -16.22066 -16.09101 -15.73462 -15.66964 -15.20082 -14.70853 -14.63693 -14.19325 -14.00466 -13.81860 -13.71794 -12.99811 -12.93518 -12.67386 -12.23680 -11.87226 -11.52010 -11.35656 -11.23459 -10.78970 -10.70294 -10.58067 -10.44887 -9.87691 -8.93544 -8.28257 -6.45072 -0.48924 0.34237 0.96074 1.43822 1.48688 1.54042 1.56895 1.99368 2.13327 2.29736 2.50305 3.02330 3.06793 3.25635 3.57057 3.80574 3.91064 4.01226 4.11046 4.28416 4.32013 4.59104 4.80813 4.86130 5.01785 5.16402 5.21999 5.25519 5.46232 5.49866 5.64318 5.69391 5.83528 6.36443 6.63347 6.63723 6.68837 6.98844 7.21633 7.38800 8.83908 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.036504 B = 0.003172 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.847491 B = 8824.966158 C = 9576.666301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.559 4.559 8 H 0.081 0.919 9 C 0.264 3.736 10 N -0.688 5.688 11 C 0.547 3.453 12 O -0.593 6.593 13 C 0.042 3.958 14 C -0.105 4.105 15 C -0.083 4.083 16 C -0.007 4.007 17 C -0.230 4.230 18 C 0.070 3.930 19 N -0.328 5.328 20 N -0.463 5.463 21 H 0.457 0.543 22 C 0.107 3.893 23 C 0.091 3.909 24 N -0.468 5.468 25 H 0.270 0.730 26 H -0.007 1.007 27 H -0.007 1.007 28 H 0.412 0.588 29 H 0.143 0.857 30 H 0.174 0.826 31 H 0.205 0.795 32 H 0.223 0.777 33 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.705 -20.583 0.018 27.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.597 4.597 8 H 0.099 0.901 9 C 0.142 3.858 10 N -0.336 5.336 11 C 0.333 3.667 12 O -0.474 6.474 13 C -0.094 4.094 14 C -0.126 4.126 15 C -0.108 4.108 16 C -0.011 4.011 17 C -0.242 4.242 18 C -0.117 4.117 19 N -0.150 5.150 20 N -0.170 5.170 21 H 0.304 0.696 22 C -0.044 4.044 23 C -0.071 4.071 24 N -0.179 5.179 25 H 0.079 0.921 26 H 0.011 0.989 27 H 0.011 0.989 28 H 0.248 0.752 29 H 0.161 0.839 30 H 0.192 0.808 31 H 0.222 0.778 32 H 0.239 0.761 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 18.523 -20.857 0.008 27.895 hybrid contribution -0.249 0.912 0.001 0.945 sum 18.273 -19.945 0.009 27.051 Atomic orbital electron populations 1.70128 1.08218 1.28725 1.49743 1.26074 0.95834 1.03864 0.93681 0.85179 0.77926 0.76410 0.79532 1.18639 1.20812 1.18647 1.21559 0.94228 0.90569 1.53322 0.90130 1.18660 0.88613 0.84054 0.94497 1.46124 1.11744 1.05207 1.70547 1.18621 0.87594 0.83719 0.76764 1.90696 1.17621 1.85433 1.53694 1.20803 0.90675 0.92859 1.05036 1.22073 1.02455 0.91464 0.96599 1.21801 0.91393 1.00432 0.97219 1.19378 0.92836 0.93160 0.95679 1.18759 0.92401 0.92390 1.20650 1.24424 0.98260 0.91968 0.97089 1.77242 0.95960 1.16118 1.25656 1.46330 1.09966 1.03534 1.57145 0.69607 1.23327 0.93480 0.91805 0.95759 1.23363 1.00114 0.87061 0.96542 1.67417 1.01306 1.38751 1.10382 0.92127 0.98916 0.98922 0.75192 0.83948 0.80828 0.77795 0.76078 0.78719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 2 C 0.01 0.29 5.46 84.66 0.46 0.76 16 3 Si 0.99 43.29 29.54 68.60 2.03 45.31 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.56 -31.88 9.28 25.60 0.24 -31.64 16 8 H 0.08 4.22 7.60 -2.91 -0.02 4.20 16 9 C 0.26 15.35 5.43 85.63 0.46 15.81 16 10 N -0.69 -33.12 5.54 -469.61 -2.60 -35.72 16 11 C 0.55 25.11 7.80 86.81 0.68 25.78 16 12 O -0.59 -31.25 16.31 -3.86 -0.06 -31.31 16 13 C 0.04 1.48 6.75 41.87 0.28 1.76 16 14 C -0.10 -2.92 9.61 22.57 0.22 -2.71 16 15 C -0.08 -1.58 9.68 22.64 0.22 -1.36 16 16 C -0.01 -0.12 5.90 -19.87 -0.12 -0.24 16 17 C -0.23 -2.99 6.05 -20.33 -0.12 -3.11 16 18 C 0.07 0.93 11.45 85.53 0.98 1.91 16 19 N -0.33 -4.94 12.66 -56.41 -0.71 -5.65 16 20 N -0.46 -3.95 7.32 -56.95 -0.42 -4.36 16 21 H 0.46 0.92 8.96 -213.39 -1.91 -0.99 16 22 C 0.11 0.81 11.40 83.86 0.96 1.77 16 23 C 0.09 1.82 10.73 85.14 0.91 2.73 16 24 N -0.47 -13.96 9.51 -184.11 -1.75 -15.71 16 25 H 0.27 15.43 8.31 -92.71 -0.77 14.65 16 26 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 27 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 28 H 0.41 17.75 7.64 -92.71 -0.71 17.04 16 29 H 0.14 4.05 7.63 -2.91 -0.02 4.02 16 30 H 0.17 1.98 7.16 -2.91 -0.02 1.96 16 31 H 0.21 1.68 7.41 -2.91 -0.02 1.66 16 32 H 0.22 -0.15 7.30 -2.91 -0.02 -0.17 16 33 H 0.20 2.12 7.03 -2.91 -0.02 2.10 16 Total: -1.00 -81.61 300.35 0.50 -81.12 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -1.44 Total: 11.69 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 5.17 Total: 11.46 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -5.20 Total: -118.27 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.06 Total: -31.31 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -81.61 0.50 -81.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639707810.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.848 kcal (2) G-P(sol) polarization free energy of solvation -81.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds