Wall clock time and date at job start Mon Mar 30 2020 01:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 N 1.30302 * 126.33874 * 90.02582 * 4 3 2 6 6 N 1.28526 * 110.07912 * 179.97438 * 5 4 3 7 7 C 1.31289 * 109.85218 * 359.97438 * 6 5 4 8 8 S 1.76200 * 126.48201 * 179.97438 * 7 6 5 9 9 C 1.81004 * 99.99950 * 359.97438 * 8 7 6 10 10 C 1.53007 * 109.47204 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.46805 * 59.99933 * 10 9 8 12 12 O 1.42901 * 109.47041 * 299.99957 * 10 9 8 13 13 C 1.50703 * 109.47175 * 179.97438 * 10 9 8 14 14 H 1.08001 * 119.99823 * 0.02562 * 13 10 9 15 15 C 1.37869 * 119.99826 * 179.97438 * 13 10 9 16 16 N 1.31512 * 120.00366 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99903 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.46769 * 60.00255 * 17 15 13 19 19 H 1.48498 * 109.46894 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47141 * 300.00253 * 17 15 13 21 21 N 1.36530 * 107.03454 * 359.77532 * 7 6 5 22 22 N 1.36601 * 127.14517 * 180.22792 * 21 7 6 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 28 28 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 29 29 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 30 30 H 1.09000 * 109.47168 * 299.99818 * 9 8 7 31 31 H 1.08996 * 109.47058 * 59.99806 * 9 8 7 32 32 H 0.96703 * 113.99676 * 299.99901 * 12 10 9 33 33 H 0.97000 * 120.00478 * 179.97438 * 16 15 13 34 34 H 1.00900 * 111.00601 * 270.14695 * 22 21 7 35 35 H 1.00897 * 110.99833 * 34.10185 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.3186 1.4433 -1.0506 6 7 5.5526 1.4437 -0.6912 7 6 5.6354 1.4438 0.6190 8 16 7.1154 1.4437 1.5752 9 6 8.3467 1.4426 0.2485 10 6 9.7511 1.4417 0.8560 11 1 9.8798 0.5518 1.4720 12 8 9.9216 2.6086 1.6632 13 6 10.7762 1.4401 -0.2486 14 1 10.4580 1.4402 -1.2806 15 6 12.1203 1.4397 0.0584 16 7 12.5078 1.4401 1.3151 17 14 13.3911 1.4384 -1.3108 18 1 13.2153 2.6507 -2.1503 19 1 14.7540 1.4375 -0.7211 20 1 13.2141 0.2257 -2.1492 21 7 4.3579 1.4486 1.1005 22 7 3.9701 1.4548 2.4103 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 8.2170 0.5524 -0.3669 31 1 8.2176 2.3323 -0.3678 32 1 9.8205 3.4397 1.1793 33 1 13.4535 1.4394 1.5312 34 1 3.8676 0.5145 2.7617 35 1 4.6165 1.9838 2.9763 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641172485.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:11 Heat of formation + Delta-G solvation = 30.776941 kcal Electronic energy + Delta-G solvation = -18264.289842 eV Core-core repulsion = 15232.251315 eV Total energy + Delta-G solvation = -3032.038526 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.105 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.87673 -36.51501 -35.99920 -35.43854 -32.24851 -31.02008 -29.82326 -29.65979 -27.11969 -25.39189 -23.02561 -22.33281 -21.21001 -20.81984 -18.48633 -17.48858 -17.26573 -16.54341 -15.34641 -15.16365 -14.92099 -14.70171 -14.42857 -14.19813 -13.82102 -13.45680 -12.63555 -12.49555 -12.17373 -11.76818 -11.68263 -11.54790 -11.44618 -11.26676 -11.01020 -10.95913 -10.92810 -10.60557 -10.26752 -10.03587 -9.81630 -9.57273 -9.27891 -8.68692 -8.41578 -7.36406 -6.12632 -4.32523 1.29179 1.63543 2.23094 2.59372 2.82866 3.25971 3.30707 3.33867 3.96969 4.32424 4.54576 4.69424 4.75565 5.02460 5.14810 5.17838 5.40134 5.43794 5.51711 5.55917 5.71921 5.78259 5.91367 5.94627 5.97695 6.06634 6.11379 6.27733 6.60917 7.33144 7.44934 7.71555 7.96189 8.68059 8.68627 9.19495 9.43556 10.91514 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.042576 B = 0.003623 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.497306 B = 7725.568603 C = 8176.037099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.025 4.025 4 C 0.203 3.797 5 N -0.284 5.284 6 N -0.283 5.283 7 C 0.130 3.870 8 S -0.019 6.019 9 C -0.105 4.105 10 C 0.245 3.755 11 H 0.067 0.933 12 O -0.560 6.560 13 C -0.570 4.570 14 H 0.062 0.938 15 C 0.082 3.918 16 N -0.858 5.858 17 Si 0.897 3.103 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.274 1.274 21 N -0.312 5.312 22 N -0.583 5.583 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.350 0.650 33 H 0.264 0.736 34 H 0.362 0.638 35 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.115 -1.214 2.582 20.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.065 4.065 4 C -0.067 4.067 5 N -0.124 5.124 6 N -0.128 5.128 7 C -0.245 4.245 8 S 0.210 5.790 9 C -0.254 4.254 10 C 0.185 3.815 11 H 0.084 0.916 12 O -0.363 6.363 13 C -0.609 4.609 14 H 0.080 0.920 15 C -0.126 4.126 16 N -0.493 5.493 17 Si 0.723 3.277 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.200 1.200 21 N -0.096 5.096 22 N -0.214 5.214 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.194 0.806 33 H 0.073 0.927 34 H 0.179 0.821 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -19.952 -1.300 2.677 20.173 hybrid contribution 1.022 -0.132 -0.787 1.296 sum -18.931 -1.432 1.890 19.079 Atomic orbital electron populations 1.21745 0.94910 1.01961 1.02097 1.21486 0.96196 0.95348 1.02646 1.20042 0.83155 0.98684 1.04648 1.24886 0.96436 1.04612 0.80727 1.74061 0.96702 1.18633 1.23037 1.74774 1.11386 1.20121 1.06474 1.27952 0.91744 1.08140 0.96692 1.85776 0.89792 1.91941 1.11485 1.24933 0.96841 1.06394 0.97260 1.19265 0.84334 0.86949 0.91002 0.91553 1.86581 1.94494 1.15419 1.39777 1.21445 0.90890 1.55816 0.92791 0.92021 1.25027 0.98530 0.93481 0.95536 1.70059 1.16100 1.46233 1.16861 0.86603 0.80168 0.78943 0.81948 1.19934 1.21094 1.19958 1.45199 1.04012 1.57085 1.03299 1.59770 1.50572 1.21384 0.89672 0.92334 0.92464 0.92501 0.92143 0.91257 0.88558 0.89197 0.88905 0.89387 0.80568 0.92652 0.82075 0.80434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.57 16 2 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 3 C -0.03 -0.24 5.76 -27.89 -0.16 -0.41 16 4 C 0.20 2.89 7.43 -153.99 -1.14 1.74 16 5 N -0.28 -5.08 12.18 32.99 0.40 -4.68 16 6 N -0.28 -5.54 11.60 30.68 0.36 -5.19 16 7 C 0.13 2.24 8.13 -88.34 -0.72 1.52 16 8 S -0.02 -0.33 21.62 -107.50 -2.32 -2.66 16 9 C -0.11 -2.17 4.87 37.16 0.18 -1.99 16 10 C 0.24 5.95 2.87 -27.88 -0.08 5.87 16 11 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 12 O -0.56 -13.70 12.32 -35.23 -0.43 -14.14 16 13 C -0.57 -15.19 8.76 -34.44 -0.30 -15.49 16 14 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 15 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 16 N -0.86 -24.59 12.84 55.43 0.71 -23.88 16 17 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 21 N -0.31 -4.34 3.81 -9.93 -0.04 -4.38 16 22 N -0.58 -5.65 10.39 60.35 0.63 -5.02 16 23 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.94 8.14 -51.92 -0.42 1.52 16 31 H 0.09 1.83 8.14 -51.92 -0.42 1.40 16 32 H 0.35 7.65 9.04 45.56 0.41 8.06 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.36 2.72 9.21 -181.36 -1.67 1.05 16 35 H 0.38 3.40 8.80 -181.37 -1.60 1.81 16 LS Contribution 319.20 15.07 4.81 4.81 Total: -1.00 -31.96 319.20 -9.64 -41.61 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.62 Total: 6.08 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -2.11 Total: -8.33 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 2.06 Total: -43.15 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.43 Total: -14.14 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: -0.33 SS G_CDS: -2.32 Total: -2.66 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.96 -9.64 -41.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641172485.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.383 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds