Wall clock time and date at job start Mon Mar 30 2020 01:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 N 1.30302 * 126.33874 * 90.02582 * 4 3 2 6 6 N 1.28526 * 110.07912 * 179.97438 * 5 4 3 7 7 C 1.31289 * 109.85218 * 359.97438 * 6 5 4 8 8 S 1.76200 * 126.48201 * 179.97438 * 7 6 5 9 9 C 1.81004 * 99.99950 * 359.97438 * 8 7 6 10 10 C 1.53007 * 109.47204 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.46805 * 59.99933 * 10 9 8 12 12 O 1.42901 * 109.47041 * 299.99957 * 10 9 8 13 13 C 1.50703 * 109.47175 * 179.97438 * 10 9 8 14 14 H 1.08001 * 119.99823 * 0.02562 * 13 10 9 15 15 C 1.37869 * 119.99826 * 179.97438 * 13 10 9 16 16 N 1.31512 * 120.00366 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99903 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.46769 * 60.00255 * 17 15 13 19 19 H 1.48498 * 109.46894 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47141 * 300.00253 * 17 15 13 21 21 N 1.36530 * 107.03454 * 359.77532 * 7 6 5 22 22 N 1.36601 * 127.14517 * 180.22792 * 21 7 6 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 28 28 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 29 29 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 30 30 H 1.09000 * 109.47168 * 299.99818 * 9 8 7 31 31 H 1.08996 * 109.47058 * 59.99806 * 9 8 7 32 32 H 0.96703 * 113.99676 * 299.99901 * 12 10 9 33 33 H 0.97000 * 120.00478 * 179.97438 * 16 15 13 34 34 H 1.00900 * 111.00601 * 270.14695 * 22 21 7 35 35 H 1.00897 * 110.99833 * 34.10185 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.3186 1.4433 -1.0506 6 7 5.5526 1.4437 -0.6912 7 6 5.6354 1.4438 0.6190 8 16 7.1154 1.4437 1.5752 9 6 8.3467 1.4426 0.2485 10 6 9.7511 1.4417 0.8560 11 1 9.8798 0.5518 1.4720 12 8 9.9216 2.6086 1.6632 13 6 10.7762 1.4401 -0.2486 14 1 10.4580 1.4402 -1.2806 15 6 12.1203 1.4397 0.0584 16 7 12.5078 1.4401 1.3151 17 14 13.3911 1.4384 -1.3108 18 1 13.2153 2.6507 -2.1503 19 1 14.7540 1.4375 -0.7211 20 1 13.2141 0.2257 -2.1492 21 7 4.3579 1.4486 1.1005 22 7 3.9701 1.4548 2.4103 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 8.2170 0.5524 -0.3669 31 1 8.2176 2.3323 -0.3678 32 1 9.8205 3.4397 1.1793 33 1 13.4535 1.4394 1.5312 34 1 3.8676 0.5145 2.7617 35 1 4.6165 1.9838 2.9763 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641172485.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:11 Heat of formation + Delta-G solvation = 8.348996 kcal Electronic energy + Delta-G solvation = -18265.262390 eV Core-core repulsion = 15232.251315 eV Total energy + Delta-G solvation = -3033.011075 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.105 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.09376 -37.99098 -37.53487 -36.18559 -34.32206 -32.16627 -31.55168 -30.73578 -28.05378 -27.31577 -24.31113 -23.29111 -22.85399 -21.85149 -19.67877 -19.24361 -18.49222 -17.80200 -16.72878 -16.45609 -16.27416 -16.18163 -15.85669 -15.77778 -15.37471 -14.33896 -14.17320 -13.51127 -13.34987 -13.29852 -13.09372 -12.82048 -12.77647 -12.68345 -12.41473 -12.20603 -12.11543 -11.93548 -11.65276 -11.50011 -11.18178 -11.04840 -10.75189 -10.63781 -10.38291 -8.75146 -8.19772 -6.46333 -0.06988 0.44261 1.02764 1.15853 1.42465 1.42990 1.51631 1.56394 2.38056 3.03582 3.07072 3.60717 3.88558 4.01928 4.08143 4.13020 4.19171 4.25535 4.29749 4.43271 4.72202 4.82476 4.86278 4.92329 4.97681 5.22762 5.30128 5.45197 5.45829 5.50749 5.62373 5.93378 6.32390 6.61971 7.25094 7.41151 7.42243 8.84535 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.042576 B = 0.003623 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.497306 B = 7725.568603 C = 8176.037099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C -0.023 4.023 4 C 0.220 3.780 5 N -0.324 5.324 6 N -0.321 5.321 7 C 0.113 3.887 8 S 0.018 5.982 9 C -0.099 4.099 10 C 0.249 3.751 11 H 0.039 0.961 12 O -0.570 6.570 13 C -0.586 4.586 14 H 0.061 0.939 15 C 0.033 3.967 16 N -0.894 5.894 17 Si 0.962 3.038 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.269 1.269 21 N -0.307 5.307 22 N -0.569 5.569 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.361 0.639 33 H 0.265 0.735 34 H 0.378 0.622 35 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.902 -1.057 2.887 22.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.063 4.063 4 C -0.050 4.050 5 N -0.164 5.164 6 N -0.166 5.166 7 C -0.263 4.263 8 S 0.247 5.753 9 C -0.249 4.249 10 C 0.189 3.811 11 H 0.057 0.943 12 O -0.374 6.374 13 C -0.626 4.626 14 H 0.079 0.921 15 C -0.171 4.171 16 N -0.530 5.530 17 Si 0.786 3.214 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.194 1.194 21 N -0.088 5.088 22 N -0.203 5.203 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.124 0.876 29 H 0.129 0.871 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.206 0.794 33 H 0.074 0.926 34 H 0.197 0.803 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -21.756 -1.147 2.981 21.990 hybrid contribution 1.404 -0.181 -0.804 1.628 sum -20.352 -1.328 2.177 20.511 Atomic orbital electron populations 1.21713 0.92969 1.02610 1.02927 1.21445 0.97747 0.94086 1.01917 1.20327 0.79887 0.99961 1.06120 1.25718 0.97904 1.01465 0.79909 1.73976 0.96596 1.20936 1.24901 1.74668 1.12743 1.21294 1.07874 1.27865 0.92893 1.09103 0.96482 1.85416 0.88725 1.92335 1.08807 1.24442 0.96537 1.05797 0.98120 1.18967 0.86228 0.85981 0.89902 0.94309 1.86519 1.94759 1.15983 1.40155 1.21820 0.91943 1.55375 0.93423 0.92092 1.25836 1.00563 0.93014 0.97708 1.70173 1.16518 1.47525 1.18813 0.85576 0.77604 0.79141 0.79076 1.19271 1.20665 1.19434 1.45285 1.02671 1.55982 1.04912 1.59910 1.49803 1.22685 0.87860 0.91898 0.91956 0.91292 0.92023 0.92926 0.87640 0.87086 0.89738 0.89800 0.79363 0.92604 0.80266 0.79709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.91 71.98 0.71 -0.68 16 2 C -0.11 -1.63 5.92 30.59 0.18 -1.45 16 3 C -0.02 -0.39 5.76 29.85 0.17 -0.22 16 4 C 0.22 5.94 7.43 137.63 1.02 6.96 16 5 N -0.32 -11.53 12.18 -49.53 -0.60 -12.13 16 6 N -0.32 -12.65 11.60 -56.85 -0.66 -13.31 16 7 C 0.11 3.84 8.13 179.55 1.46 5.30 16 8 S 0.02 0.63 21.62 -56.49 -1.22 -0.59 16 9 C -0.10 -4.16 4.87 71.98 0.35 -3.81 16 10 C 0.25 12.37 2.87 29.85 0.09 12.45 16 11 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 12 O -0.57 -28.18 12.32 -148.98 -1.84 -30.02 16 13 C -0.59 -31.68 8.76 25.60 0.22 -31.45 16 14 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 15 C 0.03 1.78 5.40 84.65 0.46 2.24 16 16 N -0.89 -51.88 12.84 21.44 0.28 -51.60 16 17 Si 0.96 42.79 29.54 68.60 2.03 44.81 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 21 N -0.31 -8.02 3.81 -185.33 -0.71 -8.72 16 22 N -0.57 -9.52 10.39 37.02 0.38 -9.14 16 23 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.08 3.63 8.14 -2.40 -0.02 3.61 16 31 H 0.08 3.54 8.14 -2.40 -0.02 3.52 16 32 H 0.36 15.87 9.04 -74.06 -0.67 15.20 16 33 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 34 H 0.38 4.56 9.21 -210.56 -1.94 2.62 16 35 H 0.38 5.93 8.80 -210.56 -1.85 4.08 16 Total: -1.00 -69.21 319.20 -1.00 -70.21 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -3.33 Total: 21.16 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 4.67 Total: -10.66 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -1.31 Total: -94.90 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -1.84 Total: -30.02 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -1.22 Total: -0.59 kcal Total: -69.21 -1.00 -70.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641172485.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.555 kcal (2) G-P(sol) polarization free energy of solvation -69.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds