Wall clock time and date at job start Mon Mar 30 2020 01:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35210 * 125.74725 * 2 1 4 4 C 1.36489 * 106.04172 * 179.97438 * 3 2 1 5 5 C 1.48448 * 126.90896 * 179.97438 * 4 3 2 6 6 C 1.39445 * 120.07229 * 4.99792 * 5 4 3 7 7 C 1.38093 * 120.04779 * 180.02562 * 6 5 4 8 8 C 1.38167 * 120.20185 * 0.02562 * 7 6 5 9 9 C 1.39105 * 120.15271 * 359.97438 * 8 7 6 10 10 N 1.39531 * 120.02310 * 180.02562 * 9 8 7 11 11 C 1.34772 * 119.99971 * 213.11429 * 10 9 8 12 12 O 1.21746 * 120.00231 * 5.12846 * 11 10 9 13 13 C 1.46158 * 120.00066 * 185.13125 * 11 10 9 14 14 H 1.08003 * 119.99699 * 6.08830 * 13 11 10 15 15 C 1.40117 * 120.00235 * 186.08214 * 13 11 10 16 16 N 1.30642 * 120.00083 * 353.82344 * 15 13 11 17 17 Si 1.86802 * 120.00295 * 173.81795 * 15 13 11 18 18 H 1.48504 * 109.47231 * 94.98212 * 17 15 13 19 19 H 1.48500 * 109.47317 * 214.98621 * 17 15 13 20 20 H 1.48505 * 109.46686 * 334.98777 * 17 15 13 21 21 C 1.38835 * 119.95263 * 359.72899 * 9 8 7 22 22 N 1.34507 * 106.19097 * 0.02562 * 4 3 2 23 23 N 1.28611 * 108.78062 * 359.97438 * 22 4 3 24 24 H 1.09003 * 109.47459 * 90.00162 * 1 2 3 25 25 H 1.09007 * 109.46717 * 209.99812 * 1 2 3 26 26 H 1.08995 * 109.47021 * 329.99402 * 1 2 3 27 27 H 1.08003 * 126.97910 * 359.95880 * 3 2 1 28 28 H 1.08006 * 119.97659 * 359.97438 * 6 5 4 29 29 H 1.07994 * 119.90335 * 180.02562 * 7 6 5 30 30 H 1.08003 * 119.92289 * 180.02562 * 8 7 6 31 31 H 0.97001 * 119.99736 * 33.11722 * 10 9 8 32 32 H 0.97001 * 119.99640 * 179.97438 * 16 15 13 33 33 H 1.07999 * 120.10641 * 180.27314 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2549 1.0974 0.0000 4 6 3.5399 0.6371 0.0006 5 6 4.7794 1.4540 0.0003 6 6 4.7013 2.8424 0.1045 7 6 5.8547 3.6018 0.1036 8 6 7.0893 2.9905 -0.0008 9 6 7.1770 1.6061 -0.1052 10 7 8.4252 0.9915 -0.2100 11 6 8.5631 -0.1342 -0.9381 12 8 7.6217 -0.5632 -1.5799 13 6 9.8428 -0.8400 -0.9572 14 1 10.6473 -0.5171 -0.3130 15 6 10.0259 -1.9357 -1.8112 16 7 9.0190 -2.4018 -2.5009 17 14 11.7098 -2.7298 -1.9639 18 1 11.7967 -3.8879 -1.0384 19 1 11.9131 -3.1950 -3.3595 20 1 12.7584 -1.7377 -1.6151 21 6 6.0218 0.8360 -0.0988 22 7 3.4574 -0.7054 0.0003 23 7 2.2167 -1.0440 0.0002 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.9342 2.1287 -0.0006 28 1 3.7380 3.3242 0.1850 29 1 5.7915 4.6768 0.1848 30 1 7.9885 3.5888 -0.0006 31 1 9.1938 1.3745 0.2413 32 1 9.1459 -3.1601 -3.0923 33 1 6.0872 -0.2393 -0.1752 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641858286.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:12 Heat of formation + Delta-G solvation = 59.439129 kcal Electronic energy + Delta-G solvation = -19579.829032 eV Core-core repulsion = 16413.589440 eV Total energy + Delta-G solvation = -3166.239592 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.18838 -40.72859 -38.73433 -35.84748 -35.24977 -34.54756 -33.09908 -31.03716 -30.10220 -28.69815 -28.16312 -24.74666 -24.10870 -22.74660 -21.97682 -21.23823 -19.43789 -18.60251 -17.56263 -17.54507 -17.38667 -16.89231 -16.16842 -15.83867 -15.52773 -15.00070 -14.73688 -14.44168 -14.25743 -14.10697 -13.76306 -13.47967 -13.20497 -12.87660 -12.81756 -12.73280 -12.44028 -12.13706 -12.03011 -11.77379 -11.40662 -11.03309 -10.89703 -10.54015 -9.91195 -9.22756 -8.69370 -8.36994 -6.94672 0.10155 0.65472 0.69476 1.37586 1.39671 1.56364 1.57298 1.72582 2.20763 2.40459 2.95492 3.10355 3.27568 3.58706 3.74303 3.94316 4.12948 4.26238 4.35863 4.40912 4.44864 4.63438 4.69777 4.83188 4.88707 5.02121 5.23116 5.24651 5.57659 5.60191 5.67993 5.74498 5.83181 6.01890 6.18398 6.45674 6.77264 7.37099 7.47589 8.37800 8.57824 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.021656 B = 0.004676 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.642816 B = 5986.840995 C = 7157.551178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.284 5.284 3 C -0.009 4.009 4 C -0.009 4.009 5 C -0.009 4.009 6 C -0.129 4.129 7 C -0.084 4.084 8 C -0.163 4.163 9 C 0.151 3.849 10 N -0.694 5.694 11 C 0.526 3.474 12 O -0.607 6.607 13 C -0.568 4.568 14 H 0.095 0.905 15 C 0.026 3.974 16 N -0.817 5.817 17 Si 1.004 2.996 18 H -0.263 1.263 19 H -0.271 1.271 20 H -0.243 1.243 21 C -0.143 4.143 22 N -0.316 5.316 23 N -0.126 5.126 24 H 0.108 0.892 25 H 0.105 0.895 26 H 0.142 0.858 27 H 0.254 0.746 28 H 0.170 0.830 29 H 0.175 0.825 30 H 0.146 0.854 31 H 0.408 0.592 32 H 0.276 0.724 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.230 14.416 6.628 21.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.078 5.078 3 C -0.161 4.161 4 C -0.147 4.147 5 C -0.012 4.012 6 C -0.149 4.149 7 C -0.102 4.102 8 C -0.184 4.184 9 C 0.054 3.946 10 N -0.339 5.339 11 C 0.332 3.668 12 O -0.492 6.492 13 C -0.604 4.604 14 H 0.113 0.887 15 C -0.189 4.189 16 N -0.446 5.446 17 Si 0.823 3.177 18 H -0.188 1.188 19 H -0.196 1.196 20 H -0.165 1.165 21 C -0.165 4.165 22 N -0.182 5.182 23 N -0.105 5.105 24 H 0.127 0.873 25 H 0.123 0.877 26 H 0.160 0.840 27 H 0.270 0.730 28 H 0.187 0.813 29 H 0.192 0.808 30 H 0.164 0.836 31 H 0.244 0.756 32 H 0.086 0.914 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.975 12.305 6.043 20.302 hybrid contribution 1.041 -0.064 -0.165 1.056 sum -13.933 12.241 5.878 19.456 Atomic orbital electron populations 1.22843 0.69054 1.08232 1.06875 1.47721 1.11294 1.03976 1.44785 1.24170 0.88337 0.96465 1.07134 1.20893 0.94895 0.90082 1.08829 1.17811 0.88062 0.93580 1.01756 1.21315 1.00948 0.89803 1.02794 1.21262 0.90140 1.01417 0.97409 1.21322 1.00700 0.90631 1.05767 1.18214 0.85924 0.92860 0.97569 1.43671 1.08687 1.28426 1.53127 1.18811 0.89959 0.79589 0.78403 1.90638 1.43126 1.68182 1.47294 1.21417 0.98368 1.14791 1.25817 0.88723 1.27103 1.02929 0.96068 0.92828 1.70202 1.34171 1.20040 1.20203 0.84918 0.75797 0.78663 0.78359 1.18784 1.19621 1.16547 1.21102 0.92738 0.99422 1.03236 1.75387 1.10397 1.14556 1.17845 1.78153 0.96386 1.14043 1.21949 0.87349 0.87663 0.83990 0.73050 0.81295 0.80763 0.83643 0.75636 0.91376 0.89895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 11.38 127.77 1.45 2.06 16 2 N -0.28 -6.84 3.73 -368.34 -1.37 -8.21 16 3 C -0.01 -0.20 11.00 83.76 0.92 0.72 16 4 C -0.01 -0.33 6.98 41.05 0.29 -0.05 16 5 C -0.01 -0.37 5.87 -20.05 -0.12 -0.48 16 6 C -0.13 -3.36 9.58 22.53 0.22 -3.15 16 7 C -0.08 -2.06 10.03 22.22 0.22 -1.84 16 8 C -0.16 -5.27 9.96 22.46 0.22 -5.04 16 9 C 0.15 6.83 6.27 38.27 0.24 7.07 16 10 N -0.69 -34.12 5.32 -307.64 -1.64 -35.75 16 11 C 0.53 32.44 7.47 86.30 0.64 33.08 16 12 O -0.61 -43.30 12.72 -4.50 -0.06 -43.36 16 13 C -0.57 -33.39 9.53 24.78 0.24 -33.15 16 14 H 0.09 4.90 7.86 -2.91 -0.02 4.88 16 15 C 0.03 1.53 5.50 85.33 0.47 2.00 16 16 N -0.82 -52.40 11.85 21.85 0.26 -52.14 16 17 Si 1.00 42.15 29.56 68.60 2.03 44.18 16 18 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 19 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 20 H -0.24 -9.27 7.11 99.48 0.71 -8.57 16 21 C -0.14 -7.14 8.31 22.62 0.19 -6.95 16 22 N -0.32 -14.54 12.17 -49.31 -0.60 -15.14 16 23 N -0.13 -4.72 13.14 37.02 0.49 -4.24 16 24 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.14 0.04 8.14 -2.39 -0.02 0.02 16 27 H 0.25 2.33 7.42 -2.91 -0.02 2.31 16 28 H 0.17 2.49 7.13 -2.91 -0.02 2.47 16 29 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 30 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 31 H 0.41 16.62 8.79 -92.71 -0.82 15.80 16 32 H 0.28 16.04 8.29 -92.71 -0.77 15.27 16 33 H 0.08 5.20 6.25 -2.91 -0.02 5.18 16 Total: -1.00 -99.96 297.97 4.44 -95.52 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.35 Total: 24.89 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 4.98 Total: -5.74 kcal Atomic # 7 Polarization: -112.62 SS G_CDS: -2.87 Total: -115.49 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: -0.06 Total: -43.36 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -99.96 4.44 -95.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641858286.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.960 kcal (2) G-P(sol) polarization free energy of solvation -99.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds